BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47170.1
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897564 jgi|Araly1|897564|Al_scaffold_0005_1530 2097 0.0
> Ahg897564 jgi|Araly1|897564|Al_scaffold_0005_1530
Length=1404
Score = 2097 bits (1135), Expect = 0.0
Identities = 1324/1414 (94%), Gaps = 17/1414 (1%)
Strand=Plus/Plus
Query 1 ATGCCAAGAAGCGACAATTCATGTCCCTTTGTCGTTGAGAAGTCAGAAGTGGTTCTTGTG 60
||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGCCAACCAGAGACAATTCATGTCCCTTTGTCGTTGAGAAATCAGAAGTGGTTCTTGTG 60
Query 61 AAACCCTCAAAGCCAACACCTGATGTCACTTTGTCTCTCTCTACCATTGACAACGATCCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAACCCTCAAAGCCAACACCTGATGTCACTTTGTCTCTCTCTACCATTGACAACGATCCT 120
Query 121 AACAACGAAGTAATCCTGGACATCCTATGCGTCTTCTCCCCAAACCCATACGTTCGAGAT 180
||||||||||| |||||||||||||||||||||||| |||||||||| ||||||| ||||
Sbjct 121 AACAACGAAGTCATCCTGGACATCCTATGCGTCTTCGCCCCAAACCCCTACGTTCAAGAT 180
Query 181 CACACCAACTACCATCCGGCTTCTTTTATTCAACTCGCCCTCTCTAATGCCCTTGTATAT 240
||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 CACGCCGACTACCACCCGGCTTCTTTTATTCAACTCGCCCTCTCTAATGCCCTTGTCTAT 240
Query 241 TATTACCCTCTCGCCGGAAAACTTCACCGACGGACGAGCGACCAGACACTCCAATTAGAT 300
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 241 TATTACCCTCTCGCCGGAAAACTTCACCGGCTGACGAGCGACCAGACACTCCAATTAGAT 300
Query 301 TGTACGCAAGGCGATGGAGTCCCC-TTGATAAAGGCAACGGCCTCGTGCACTCTCTCTTC 359
|||||| ||||||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct 301 TGTACGGAAGGCGATGGAGTCCCCCTT-ATAAAGGCAACGGCCTCGTGCTCTCTCTCTTC 359
Query 360 TCTCAATTACTTGGAGAGTGGTAATCACTTGGAAGCAACATACCAACTTGTTCCTTCACA 419
|||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||
Sbjct 360 TCTCAATTACTTGGAGAGTGGTGATCACTTGGACGCAACCTACCAACTTGTTCCTTCACA 419
Query 420 CGACACTTTGAAAGGTTGTAATCTTGGGTATAGGCCTCTTGCTCTACAGATCACTAAGTT 479
|||||| ||||||||||||||||||||||| |||||||| ||||||||| ||||||||||
Sbjct 420 CGACACATTGAAAGGTTGTAATCTTGGGTACAGGCCTCTGGCTCTACAGGTCACTAAGTT 479
Query 480 CACATGTGGAGGAATGACTATTGGCTCTG-TTCATTCTCACACCGTTTGTGATGGTATTG 538
||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 480 CACTTGTGGAGGAATGACTATTGGCT-TGGTTCATTCTCACACCGTTTGTGATGGTATTG 538
Query 539 G-CATGGCTCAGTTTTCTCAAGCCATACTTGAACTGGCCGCCGG-AAGAGCCCAACCCAC 596
| | |||||||||||||||||||||||||||| || |||||||| || ||||||||||||
Sbjct 539 GAC-TGGCTCAGTTTTCTCAAGCCATACTTGAGCTTGCCGCCGGGAA-AGCCCAACCCAC 596
Query 597 GGTCATCCCCGTCTGGGACAGACACATGATCACTTCTAACCAAATTAGTACTCTATGCAA 656
|||||||||||| ||||||||| ||| | |||||||||||||||||||| ||| ||| ||
Sbjct 597 GGTCATCCCCGTGTGGGACAGAGACAGGCTCACTTCTAACCAAATTAGTTCTCCATGTAA 656
Query 657 GCTCGGGAACGACAAAAATA-ATCCAAAACTCGTTGATGTGGAGAAAGATTGTTCTTCGC 715
|||||| ||||||||||| | ||||||||||||||||| ||||||||| ||| |||||||
Sbjct 657 GCTCGGTAACGACAAAAA-AGATCCAAAACTCGTTGATTTGGAGAAAGCTTGCTCTTCGC 715
Query 716 CCGATACACCAACGGAAGACATGGTCCGTGAAATTCTGAACATTACATCCGAAGACATCA 775
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 716 CCGATACACCAACCGAAGACATGGTCCGTGAAATCCTGAACATTACATCCGAAGATATCA 775
Query 776 CTAAACTCAAGAACATAATTATCGAAGATGAGAACCTTACCAATGAGAAGGAGAAGAACA 835
|||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||
Sbjct 776 CTAAACTCAAGAACATAAGTATCGAAGATGAGAACCTTGCCAATGAGAACGAGAAGAACA 835
Query 836 TGAAGATCACGACCGTGGAGGTTCTTGCGGCCTACGTTTGGAGAGCAAGATGTCGAGCCA 895
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 836 TGGAGATCACGACCGTGGAGGCTCTTGCGGCCTACGTTTGGAGAGCAAGATGTCGAGCCA 895
Query 896 TGAAGCTAAATCCCGACACGATTACGGATTTGGTTATATCCGTCAGCATCCGCAGCTCTA 955
|||||||| |||||||||||||||| |||||||| ||||| ||| | |||||||||||||
Sbjct 896 TGAAGCTAGATCCCGACACGATTACAGATTTGGTGATATCAGTCGGTATCCGCAGCTCTA 955
Query 956 TCGAGCCTCCATTACCTGAAGGCTACTATGGAAATGCCTTCAC-TCATGCTTCCGTGGCA 1014
| ||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||
Sbjct 956 TGGAGCCTCCATTACCTGAAGGCTACTATGGAAATGCCTTCACCT-ATGCATCCGTGGCA 1014
Query 1015 TTGACAGCGAAAGAGCTAAGCAAAACACCGATATCTCGCCTTGTGAGGCTCATAAAAGAC 1074
||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1015 TTGACAGCGGAAGAGCTAAGCAAAACGCCGATGTCTCGCCTTGTGAGGCTCATAAAAGAC 1074
Query 1075 GCGAAGAGAGCGGCGCTTGATAATGGATACGTGTGTGAGCAACTTAGAGAGATGGAGAAT 1134
|||||||||| |||||| |||||||| |||||||| ||| ||||||||||||||||||||
Sbjct 1075 GCGAAGAGAGAGGCGCTCGATAATGGTTACGTGTGGGAGAAACTTAGAGAGATGGAGAAT 1134
Query 1135 ACAATGAAGCTGAAGTTAGCTTCCAAGGAGATCCACGGAGGAGTTTTCATGATGCTGACT 1194
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1135 ACAATGAAGCTGAAGTTAGCTTCCGAGGAGATCCACGGAGGAGTTTTCATGATGCTGACT 1194
Query 1195 GATTGGCGTCATCTTGGGTTGGATCAAGACGTTTGGGGAGGTTTAGTGAACATTATACCT 1254
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1195 GATTGGCGTCATCTTGGGTTGGATCAAGAAGTTTGGGGAGGTTTAATGAACATTATACCT 1254
Query 1255 TTGGTTCCTCTGACACTGCCCTTTT-TGTGTGTTTTGTTACCAGCGTCAAAAGCGGTTCC 1313
|||||||||||||||||||| |||| ||||||||||||| || |||||||||||||||||
Sbjct 1255 TTGGTTCCTCTGACACTGCC-TTTTATGTGTGTTTTGTTGCCGGCGTCAAAAGCGGTTCC 1313
Query 1314 GGGGAAGAGCGGTGGTGTTCGGGTGCTGACAACACTACCTAGGGACGCGATGGCCAAGTT 1373
|||||||| |||||||||||||||||||||||||| |||||| |||| |||||||||||
Sbjct 1314 AGGGAAGAGTGGTGGTGTTCGGGTGCTGACAACACTTCCTAGGTACGCAATGGCCAAGTT 1373
Query 1374 CAAGGAAGAGATAGATGCAGTACTCCATCCGTGA 1407
|||||||||||| |||||| ||||||| ||||
Sbjct 1374 CAAGGAAGAGATGGATGCA---CTCCATCGGTGA 1404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52602628345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5