BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47180.1
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937462 jgi|Araly1|937462|scaffold_501653.1 865 0.0
> Ahg937462 jgi|Araly1|937462|scaffold_501653.1
Length=676
Score = 865 bits (468), Expect = 0.0
Identities = 602/663 (91%), Gaps = 23/663 (3%)
Strand=Plus/Plus
Query 81 CTTATTCTTCTCTAATGGATAACCAAGAAGAAGAGCCTAAGCAACCTCCAAACAAACTTC 140
||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||
Sbjct 7 CTTCTTCTTCTCTAATGGATAATCAAGGAGAAGAGCCTAAGCAGCCTCCAAACAAACTTC 66
Query 141 CCGATCTAGCCCTCTTTGAGCAAGCAAATTCTGAAGTTGCTCTTGCTGCCTCCCAAGCTA 200
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 CCGATCTAACCCTCTTCGAGCAAGCAAATTCTGAAGTTGCTCTTGCTGCCTCCCAAGCTA 126
Query 201 ATTCCCATTTTGCCCATGCT-ATGCATGATTC-GTCTCCCTCAATGATTTCAATGATAGA 258
||||||| ||||||| | || || ||||| || | || | |||| | |||||||||||||
Sbjct 127 ATTCCCAATTTGCCCCTTCTAAT-CATGACTCGGCCT-CTTCAAGGCTTTCAATGATAGA 184
Query 259 AAGTGACGAAGAATC------TGAAGAT---GAAGAAGAAATCAATGAGAACTACTACGA 309
|||||| |||||||| ||||||| |||||||||| ||||||||||||||||||
Sbjct 185 AAGTGATGAAGAATCTGAAGATGAAGATGAAGAAGAAGAAAGCAATGAGAACTACTACGA 244
Query 310 GTATTTCGATAGCAATGGATTTGGAGTAGATGAAGACGAAATCAATGAGTTTCTTGAAGA 369
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 245 GTATTTCGATAGCAATGGATTTGGAGAAGATGAAGACGAAATCAATGAGTTTCTTGAAGA 304
Query 370 TCAAGAAAGCAATTCCAACCTTGAGGAGGAGGATGATTTCTTGGAGGAAGAAGATGAGAT 429
|||||||||||| |||||| || |||||||||||||||||||||||||||||| |
Sbjct 305 TCAAGAAAGCAACTCCAACATT------GAGGATGATTTCTTGGAGGAAGAAGATGAGGT 358
Query 430 TGATCCCGACCAATTGTCTTACGAGGAACTGATTGCGCTTGGAGATTTCATCGGAGTCGA 489
||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 359 TGACCCCGACCAGTTGTCTTACGAGGAGCTGATTGCACTTGGAGATTTCATCGGAGTCGA 418
Query 490 AAACCGTGGGC-T-AACTCCTATTGAAATCTCTACGTGTTTGAACGCATCTACATACGTA 547
||| ||| ||| | || ||| | |||||||| |||||||||||||||||||| ||| ||
Sbjct 419 AAAACGT-GGCATGAA-TCCAAGCGAAATCTCCACGTGTTTGAACGCATCTACCTACATA 476
Query 548 TTTTCACATAACAAAAACGAGATTGATCGTTGTGTAGTTTGCCAAATGGAGTTTGAAGAA 607
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 477 TTTTCTCATAACAAAAACGAGATTGATCGTTGTGTGGTTTGCCAAATGGAGTTTGAAGAA 536
Query 608 AGAGAATCTTTGGTCGTTCTCCGACCTTGTGACCATCCATACCACTCTGAGTGTATAACC 667
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 537 AGAGAATCTTTGGTCGTTCTCCGACCTTGTGACCATCCATACCACTCTGAATGTATAACC 596
Query 668 AAATGGCTTGAGACAAAGAAGATTTGTCCCATTTGTTGTTCTGAACCATCTGTCAGTTGA 727
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 597 AAATGGCTTGAGACGAAGAAGATTTGTCCCATTTGTTGTTCTGACCCATCTGTGAGCTGA 656
Query 728 AAT 730
|||
Sbjct 657 AAT 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27562868991
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5