BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47190.1
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897568 jgi|Araly1|897568|Al_scaffold_0005_1534 1515 0.0
> Ahg897568 jgi|Araly1|897568|Al_scaffold_0005_1534
Length=1017
Score = 1515 bits (820), Expect = 0.0
Identities = 955/1017 (94%), Gaps = 21/1017 (2%)
Strand=Plus/Plus
Query 23 ATGAGCAACTCGGAGTCTTATCCACCAGAGTTTCGACCTCTAATGA--G-------CG-- 71
||||||||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct 1 ATGAGCAACTCGGAGTCTTATCCACCAGAGTTTCGACCTTTAATGAGCGAACCAACCGAA 60
Query 72 --A-AAA-ATCCACTGAA------ACGGGTCTAGACCGGAGCAAAGATATCGATATCCCG 121
| ||| ||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 61 CCAGAAACATCCATTGAACCGCGGCCGGGTTTAGACCGGAGCAAAGATATCGATATCCCG 120
Query 122 GTTATCGATATGGAGCATTTGGACATGGAGAAACTGAGAGAAGCATGCAAAGACTGGGGG 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTATCGATATGGAGCATTTGGACATGGAGAAACTGAGAGAAGCATGCAAAGACTGGGGG 180
Query 182 ATCTTCCATTTGGAGAATACTGGGATACCCTTAACGTTTATGTCACAGGTGAAAGAGATA 241
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 181 ATCTTCCATTTGGAGAATACTGGGATACCTTTAACGTTGATGTCACAGGTGAAAGAGATA 240
Query 242 ACGGAGTCAGTGTTGAGTCTGCCGTTTGAAGAGAAACGGACGTTGTTCGGCGTTAACTCT 301
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACGGAGTCAGTGTTGAGTCTACCGTTTGAAGAGAAACGGACGTTGTTCGGCGTTAACTCT 300
Query 302 CCGTTATCGTATTACTGGGGAACACATACGGTAAGTCCATCGGGAAAAGCCGTAACGAGA 361
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 301 CCGTTATCGTATTACTGGGGAACACATACGGTGAGTCCATCGGGAAAAGCTGTAACGAGA 360
Query 362 GCCCCACAAGAATCTAGTGGTCACTTGTTCGAAGGCATCAATATTCCTCTTGCATCTCTC 421
|| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 361 GCACCACAAGAATCTAGTGGTCACTTGTTCGAAGGCATCAATATTCCTCTGGCTTCTCTC 420
Query 422 TCTCGGCTTCTTGCACTTTCTTGTACTGATCCCAAGCTTGAGTCTTTCCGAGTGGTGATG 481
||||| ||||| |||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 421 TCTCGTCTTCTGGCACTTTCTTGTTCTGATCCCAAGCTTGAGTCTTTCAGAGTGGTGATG 480
Query 482 GAGGAATATGGGAAGCACGTAACTAGGATTATTGTGACCCTATTTGAAGCTATAATAGAA 541
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||
Sbjct 481 GAGGAATATGGAAAGCATGTAACTAGGATTATTGTGACCCTATTTGAAGCTATAACAAAA 540
Query 542 ACCTTGTCCCTTGAATTATCCGGTGACCAAAAAATGGGCTACTTATCAGAGTCAACAGGT 601
|| |||||||| ||||||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct 541 ACTTTGTCCCTCGAATTATCCGGTGACCAGAAAATGAGCTACTTATCGGAGTCAACAGGT 600
Query 602 GTGATACGTGTTCAACGGTATCCTCAGTGTACCGAATCCCCCGGACTCGAAGCTCATACG 661
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 601 GTGATACGTGTTCAACGGTATCCTCAGTGCACTGAATCCCCCGGACTCGAGGCTCATACG 660
Query 662 GACAGTTCGGTGATATCGATCATAAACCAAGACGATGTTGGTGGGCTAGAGTTCATGAAA 721
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 GATAGTTCGGTGATATCGATCATAAACCAAGACGACGTTGGTGGGCTAGAGTTCATGAAA 720
Query 722 GATGGGGAATGGTTCAATGTCAAACCTCTTGCCAGTTCTTTTGTCGTCGGTCTTGGGGAT 781
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 721 GATGGGGAATGGTTCAATGTCAAACCTCTTGCCAATTCTTTTGTCATCGGTCTTGGGGAT 780
Query 782 ATGATGCAGGTGATAAGTGATGAGGAATACAAGAGTGTGTTGCATAAAGTAGGAAAGAGG 841
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 ATGATGCAGGTGATAAGTGATGAGGAATACAAGAGTGTGTTGCATAAAGTGGGAAAGAGG 840
Query 842 ATGAGGAAGAAAGAGAGATACTCGATAGTTAACTTTGTGTTCCCGGACAAAGACTGTATG 901
|||| |||||| |||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct 841 ATGAAGAAGAAGGAGAGATACTCGATAGTTTACTTTGTGTTCCCGGAGAAAGATTGTATG 900
Query 902 TTTAACTCTACTCGCTATAAGCCATTCAAATTCTCGGAGTTTGAAGCTCAAGTTAAGCTT 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTTAACTCTACTCGCTATAAGCCATTCAAATTCTCGGAGTTTGAAGCTCAAGTTAAGCTT 960
Query 962 GATGTTGAGACCCATGGTAGCAAAGTCGGCCTTTCTAGGTTCCTGAGCAACCCCTAG 1018
||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 961 GATGTTGAGACTCATGGTAGCAAAATCGGCCTTTCTAGGTTCCTAAGCAACCCCTAG 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42964527459
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5