BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47300.1
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485095 jgi|Araly1|485095|fgenesh2_kg.5__1087__AT3G47300.1 953 0.0
> Ahg485095 jgi|Araly1|485095|fgenesh2_kg.5__1087__AT3G47300.1
Length=770
Score = 953 bits (516), Expect = 0.0
Identities = 615/663 (93%), Gaps = 6/663 (1%)
Strand=Plus/Plus
Query 39 AATTCCCTCTCTGAGATTTCAAAATCCGCCATGGACAAAACACAATTGATCTTGTTAGGA 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATTCCCTCTCTGAGATTTCAAAATCCGCCATGGACAAAACACAATTGATCTTGTTAGGA 60
Query 99 CTACCGATTTTCCTGCTTTGTTC-CG-ATCTCTTCAATCTCTTCACGCCTCCACCGCCGA 156
|||||||||||| |||||| | | || ||||||| ||||||||||| |||||||||||||
Sbjct 61 CTACCGATTTTCTTGCTTT-T-CACGGATCTCTTAAATCTCTTCACTCCTCCACCGCCGA 118
Query 157 AATCTCAGCACCAATCACCACCGTCTATCTCAGAAACCCTAGATTTCCCCGCACAGAAGT 216
|||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 119 AATCTCAGCAACAACCACCACCGTCTATCTCAGAAACCCTAGATTTCCCCTCACAGAAGT 178
Query 217 CAACTGGTGTTGGATATGGAAACACCGTAGAGATCAACTTCTGCATCTCCTGCTCGTACA 276
||| |||||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 179 CAAGTGGTGTTGGATATGGAAACACCGTAGAGATCAACTTCTGCGTTTCCTGCTCTTACA 238
Query 277 AGGGAACTGCTGTATCAATGAAGAAGATGTTAGAGAGTGTTTTTCCTGGATTAGATGTAG 336
|||||||||| ||| | ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 239 AGGGAACTGCAGTAACCATGAAGAAGATGTTAGAGACAGCTTTTCCTGGATTAGATGTAG 298
Query 337 TTCTTGCTAATTACCCTGCACCAGCACCAAAACGTATTCTTGCTAAGGTTGTGCCAGTTG 396
||||||| |||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 299 TTCTTGCGAATTACCCGGCACCAACGCCAAAACGTATTCTTGCTAAGGTTGTGCCAGTTG 358
Query 397 CTCAGGTGGGTGTTATTGGTCTCATTATGGGAGGTGAACAGATATTTCCCATGATTGGAA 456
||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 359 CTCAGATGGGAGTTATTGGTCTCATTATGGGAGGTGAACATATATTTCCTATGATTGGAA 418
Query 457 TTGCGCAGCCTCCTGCTTGGTATCACTCTTTGAGAGCGAATAGATTCGGGTCCATGGCTT 516
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 419 TTGCGCAGCCTCCTGCTTGGTACCACTCTTTGAGAGCGAATAGATTCGGGTCCATGGCTT 478
Query 517 CCACTTGGCTTCTTGGTAACTTCTTGCAGTCTTTTTTGCAAAGTTCTGGTGCTTTTGAAG 576
||||||||||||| ||||||||| |||||||||| |||||||||||||| || || ||||
Sbjct 479 CCACTTGGCTTCTCGGTAACTTCCTGCAGTCTTTCTTGCAAAGTTCTGGCGCCTTCGAAG 538
Query 577 TTAGCTGCAATGGAGAATTGGTGTTTTCTAAATTGAAAGAAGGGAGATTTCCGGGGGAGA 636
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 539 TTAGCTGCAATGGAGAATTGGTGTTCTCTAAATTGAAAGAAGGGAGATTCCCAGGGGAGA 598
Query 637 TTGAGTTGAGAGATCTCATCAGTGGAACTAT-GACGAAACCATTCGTCACAGGCAGCTAT 695
||||| | ||||| ||| |||||||||| || ||||||||| |||||| ||| ||||||
Sbjct 599 TTGAGCTCAGAGAACTCGTCAGTGGAAC-ATTGACGAAACCGTTCGTCGCAGACAGCTAC 657
Query 696 TGA 698
|||
Sbjct 658 TGA 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34882469055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5