BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47340.1
Length=2207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937466 jgi|Araly1|937466|scaffold_501657.1 2837 0.0
> Ahg937466 jgi|Araly1|937466|scaffold_501657.1
Length=1795
Score = 2837 bits (1536), Expect = 0.0
Identities = 1701/1783 (95%), Gaps = 2/1783 (0%)
Strand=Plus/Plus
Query 190 aaaaaaaaaaCATGTGTGGAATACTTGCCGTGTTAGGATGTTCCGATGATTCTCAGGCCA 249
||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 10 AAAGAAAAAACATGTGTGGAATACTTGCCGTTTTAGGATGTTCCGACGATTCTCAGGCCA 69
Query 250 AGAGAGTTCGTGTTCTTGAGCTTTCTCGCAGATTGAGGCACAGAGGACCTGACTGGAGTG 309
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 70 AGAGAGTTCGTGTTCTTGAGCTTTCTCGCAGATTGAGGCACAGGGGACCTGACTGGAGTG 129
Query 310 GCTTATATCAGAACGGAGATAATTACTTGGCCCATCAACGTCTTGCCGTCATCGATCCTG 369
| |||||||||||||| || |||||||||||||||||||||||||| ||||| |||||||
Sbjct 130 GATTATATCAGAACGGTGACAATTACTTGGCCCATCAACGTCTTGCGGTCATTGATCCTG 189
Query 370 CTTCCGGTGATCAACCTCTTTTCAACGAGGACAAGACCATTGTTGTCACGGTGAACGGAG 429
||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 190 CTTCCGGTGATCAACCTCTCTTCAACGAAGACAAGACCATTGTTGTCACGGTGAATGGAG 249
Query 430 AGATTTATAACCATGAGGAGCTGAGAAAACGTCTGAAGAATCACAAGTTCCGTACTGGTA 489
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 250 AGATTTATAACCATGAGGAGCTGAGAAAACGTTTGAAGAATCACAAGTTCCGTACTGGTA 309
Query 490 GTGATTGTGAAGTCATTGCTCACTTGTACGAGGAGTATGGTGTGGATTTTGTTGATATGT 549
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GTGATTGTGACGTCATTGCACACTTGTACGAGGAGTATGGTGTGGATTTTGTTGATATGT 369
Query 550 TGGATGGAATATTCTCCTTTGTGTTGCTCGACAC-ACGAGATAACTCTTTCATGGTGGCT 608
|||||||||| ||||||||||||||||| ||||| | ||||||| || ||||||||||||
Sbjct 370 TGGATGGAATCTTCTCCTTTGTGTTGCTGGACACTA-GAGATAATTCCTTCATGGTGGCT 428
Query 609 CGTGATGCGATTGGTGTCACTTCGCTCTACATTGGTTGGGGACTAGACGGATCTGTGTGG 668
||||| ||||||||||||||| ||||||||||||| |||||| |||| |||||||| |||
Sbjct 429 CGTGACGCGATTGGTGTCACTCCGCTCTACATTGGCTGGGGATTAGATGGATCTGTCTGG 488
Query 669 ATATCTTCAGAGATGAAAGGCCTAAACGATGACTGTGAGCATTTCGAAACGTTTCCTCCA 728
||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 489 ATATCTTCAGAAATGAAAGGCTTAAACGATGATTGTGAGCATTTCGAAACGTTTCCTCCA 548
Query 729 GGTCATTTTTATTCAAGCAAATTAGGAGGGTTTAAGCAATGGTATAATCCTCCTTGGTTC 788
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 549 GGTCATTTTTATTCAAGCAAATTAGGAGGGTTTAAGCAATGGTACAATCCTCCTTGGTTC 608
Query 789 AATGAATCTGTTCCTTCAACGCCTTATGAGCCTCTTGCGATAAGACGCGCCTTTGAAAAC 848
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 609 AATGAATCCGTTCCTTCAAAGCCTTATGAACCTCTTGCGATAAGACGCGCCTTTGAAAAC 668
Query 849 GCTGTGATTAAGCGGTTGATGACTGATGTTCCATTTGGAGTTTTGCTCTCTGGTGGTCTT 908
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 669 GCTGTGATTAAGCGGTTGATGACTGATGTTCCCTTTGGAGTTTTGCTCTCTGGTGGTCTT 728
Query 909 GATTCTTCCCTTGTTGCCTCCATCACTGCACGTCACTTGGCCGGTACTAAGGCGGCTAAG 968
|||||||| |||||||||||||||||||| ||| |||||||||||||||| || ||||||
Sbjct 729 GATTCTTCTCTTGTTGCCTCCATCACTGCCCGTTACTTGGCCGGTACTAAAGCAGCTAAG 788
Query 969 CAATGGGGTCCTCAGCTCCATTCCTTTTGCGTTGGTCTTGAGGGCTCACCGGACTTGAAG 1028
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 789 CAATGGGGTCCGCAGCTCCATTCCTTTTGCGTTGGCCTTGAGGGCTCGCCGGACTTGAAG 848
Query 1029 GCAGGGAAAGAGGTGGCGGAATATTTGGGGACGGTGCACCACGAGTTCCACTTCTCGGTG 1088
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 849 GCAGGGAAAGAGGTGGCGGAATATTTAGGGACGGTGCACCACGAGTTCCACTTCTCGGTG 908
Query 1089 CAGGACGGGATTGATGCGATAGAGGATGTGATTTACCATGTTGAGACCTATGATGTGACG 1148
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 909 CAGGACGGGATTGATGCAATAGAGGATGTGATTTACCATGTGGAGACTTATGATGTGACG 968
Query 1149 ACTATCAGAGCGAGCACACCGATGTTCTTGATGTCCCGGAAAATCAAGTCTCTAGGGGTC 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 ACTATCAGAGCGAGCACACCGATGTTCTTGATGTCCCGGAAAATCAAGTCTCTAGGGGTC 1028
Query 1209 AAGATGGTTCTCTCCGGCGAAGGTGCGGACGAGATCTTTGGAGGGTACCTCTATTTCCAC 1268
||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||||
Sbjct 1029 AAGATGGTTCTCTCCGGTGAAGGTTCCGACGAGATCTTTGGAGGGTATCTCTATTTCCAT 1088
Query 1269 AAGGCACCTAACAAGAAAGAGTTTCACCAAGAAACTTGTCGCAAGATCAAGGCTCTTCAC 1328
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 AAGGCACCTAACAAGCACGAGTTTCACCAAGAAACTTGTCGCAAGATCAAGGCTCTTCAC 1148
Query 1329 AAGTATGACTGTCTAAGAGCCAACAAATCTACCTCTGCCTTTGGACTAGAGGCACGTGTT 1388
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1149 AAGTATGACTGTCTAAGAGCCAACAAATCTACATCTGCCTTTGGACTAGAGGCACGTGTT 1208
Query 1389 CCTTTCCTTGACAAAGACTTCATCAACACAGCTATGTCTCTCGACCCTGAATCCAAGATG 1448
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 CCTTTCCTTGACAAAGATTTCATCAACACAGCTATGTCTCTCGACCCTGAATCCAAGATG 1268
Query 1449 ATCAAGCCAGAGGAAGGAAGGATCGAGAAATGGGTTCTAAGGAGAGCCTTTGACGACGAA 1508
||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1269 ATCAAGCCAGAGGAAGGGAGGATTGAGAAATGGGTTCTAAGGAGAGCCTTCGACGACGAA 1328
Query 1509 GAACGTCCTTATCTACCAAAACACATTCTCTACAGACAGAAAGAACAGTTCAGTGATGGT 1568
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1329 GAACGTCCTTATCTGCCAAAGCACATTCTATACAGACAGAAAGAACAGTTCAGTGATGGT 1388
Query 1569 GTTGGCTACAGTTGGATCGATGGCCTGAAAGATCACGCTGCTCAAAATGTCAATGACAAG 1628
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1389 GTTGGCTACAGTTGGATCGATGGCCTGAAAGATCACGCTGCTCAAAATGTTAATGACAAG 1448
Query 1629 ATGATGTCGAACGCGGGGCATATCTTCCCTCACAACACTCCAAACACTAAAGAAGCTTAC 1688
|||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1449 ATGATGTCCAACGCGGCGCATATCTTCCCTCACAACACACCAAACACTAAAGAAGCTTAC 1508
Query 1689 TACTACAGAATGATCTTTGAAAGGTTCTTCCCGCAGAACTCTGCGAGACTAACGGTTCCT 1748
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 1509 TACTACAGAATGATCTTTGAGAGGTTCTTCCCACAGAACTCTGCGAGACTAACAGTTCCT 1568
Query 1749 GGAGGTGCCACCGTGGCTTGTTCGACTGCAAAGGCAGTGGAGTGGGATGCAAGCTGGTCC 1808
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1569 GGAGGTGCGACCGTGGCTTGCTCGACTGCAAAGGCAGTGGAGTGGGATGCAAGCTGGTCC 1628
Query 1809 AACAATATGGATCCATCAGGAAGAGCCGCTATCGGAGTTCACCTTTCGGCCTACGATGGC 1868
||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |||
Sbjct 1629 AACAATATGGATCCATCAGGAAGAGCCGCCATCGGAGTTCACCTCTCGGCCTATGACGGC 1688
Query 1869 AAGAACGTGGCATTGACCATACCACCACTTAAGGCAATTGACAACATGCCGATGATGATG 1928
||||||||||||||| |||| || |||||||||||||||||| |||||||||||||||||
Sbjct 1689 AAGAACGTGGCATTGCCCATGCCGCCACTTAAGGCAATTGACGACATGCCGATGATGATG 1748
Query 1929 GGTCAAGGAGTTGTGATTCAGTCATAACTTCGAAGGAGAAATG 1971
||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1749 GGTCAAGGAGTTGTGATTCAGACATAACTTTGAAGGGGAAATG 1791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83074824345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5