BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47350.2
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323349 jgi|Araly1|323349|fgenesh1_pm.C_scaffold_5000893 904 0.0
Ahg937469 jgi|Araly1|937469|scaffold_501660.1 497 5e-140
> Ahg323349 jgi|Araly1|323349|fgenesh1_pm.C_scaffold_5000893
Length=930
Score = 904 bits (489), Expect = 0.0
Identities = 695/795 (87%), Gaps = 11/795 (1%)
Strand=Plus/Plus
Query 31 ATGGATATGCTTCA-CACTATTCTCAATTTTCTTCTTCCTCCTCTTACTATCAGTTTTCT 89
|||||||||||| | ||| ||||||||| ||||||| ||||||||||| |||||||| ||
Sbjct 1 ATGGATATGCTT-ACCACCATTCTCAATCTTCTTCTACCTCCTCTTACCATCAGTTTCCT 59
Query 90 CGTCCTATTTTACCCATTTTATCTTTTTACCAAACTTATGAGTTGTC-T--TAAGCACCT 146
||| | ||||||||||||||| |||| | ||||||| || ||||| | |||| ||||
Sbjct 60 TGTCTTCTTTTACCCATTTTATGTTTTGATCAAACTTGTGCTTTGTCTTCATAAGTACCT 119
Query 147 TCACTTTGAAAACGTTA-CTGGGAAAGTAGTTCTAATCACCGGAGCTTCCTCCGGCATCG 205
|||||| ||||||| || | | |||||||||||||||||||||||||||||||||||||
Sbjct 120 TCACTTCGAAAACG-TAGCCAGAAAAGTAGTTCTAATCACCGGAGCTTCCTCCGGCATCG 178
Query 206 GAGAGCATGTGGCATACGAGTACGCAAAGAAAGGAGCAAAATTAGCTCTTGTTGCTCGAA 265
|||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct 179 GAGAGCATGTGGCATACGAGTACGCAAAGAAAGGAGCATATTTGGCTCTTGTTGCTCGAA 238
Query 266 GAAAGGATCGTCTAGAGATTGTAGCAGAAACATCACGTCAATTAGGATCTGGCGATGTCA 325
||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 239 GAAGGGATCGTCTAGAGATTGTAGCTGAAACTTCACGTCAATTAGGATCTGGTAATGTCA 298
Query 326 TCATCATACCTGGTGATGTTTCTAATGTTGAGGACTGCAAGAAGTTCATCGACGAAACGA 385
||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 299 TCACCATACCTGGTGATGTTTCTAATGTTGAGGACTGCAAGAAGTTCATCGATGAGACGA 358
Query 386 TTCATCATTTCGGAAAACTGGACCACCTGATCAACAATGCTGG-AGTACCTCAAACTGTT 444
||| ||||||||||||||| ||||||||||||||||||||||| | || ||||||||||
Sbjct 359 TTCGTCATTTCGGAAAACTAGACCACCTGATCAACAATGCTGGTA-TATTTCAAACTGTT 417
Query 445 ATATTCGAAGATTTCACACAAATTCAAGACGCTAATTCTATAATGGATATCAACTTTTGG 504
| |||||||||||||| |||||||||||||| ||| |||||||||| ||||||||||||
Sbjct 418 CTTTTCGAAGATTTCACTCAAATTCAAGACGCAAATCCTATAATGGACATCAACTTTTGG 477
Query 505 GGCTCAACGTACATCACTTATTTTGCTATTCCTCATCTTCGAAAAAGCAAAGGAAAAATT 564
||| |||| |||||||||||||| || ||||||||||||||||| || |||||||||||
Sbjct 478 GGCACAACATACATCACTTATTTCGCAATTCCTCATCTTCGAAAGAGTAAAGGAAAAATC 537
Query 565 GTTGTGATTTCTTCTGCTACGGCAATTATACCTTTGCAAGCGGCAAGCGTCTATTCAGCA 624
|| | |||| | |||| | | |||| ||||||||||| | ||||||| | ||| |||||
Sbjct 538 GTCGCGATTACATCTGGTTCAGCAAATATACCTTTGCCATTGGCAAGCATATATGCAGCA 597
Query 625 AGCAAAGCAGCTTTAGTAAAATTCTTTGAAACATTAAGAGTTGAGATCAGTCCCGATATC 684
||||||||||| ||| ||| ||||||||| ||||||||| | ||| | ||||| ||||||
Sbjct 598 AGCAAAGCAGCCTTATTAAGATTCTTTGAGACATTAAGAATAGAGCTAAGTCCGGATATC 657
Query 685 AAAATAACAATCGCTCTTCCC-GGATTTATATCTACGGATATGACCACTCCTCAGTTTAA 743
||||||||||| | ||| ||| ||| || |||| || ||||||||||| ||||| | ||
Sbjct 658 AAAATAACAATTGTTCT-CCCAGGAGTTGTATCAACAGATATGACCACACCTCACTGTAT 716
Query 744 AGAAATGTATGGTTCAGATTTCATACTTTCGGAATCAGTGAGTCGATGCGCAAAAGCGAT 803
|||| ||||||||||||||| || || ||||||||||||||| |||||||||||| ||
Sbjct 717 GGAAAAGTATGGTTCAGATTTTATTCTATCGGAATCAGTGAGTAAATGCGCAAAAGCAAT 776
Query 804 CTTCAGAGGTATTGG 818
||||| |||||||||
Sbjct 777 CTTCAAAGGTATTGG 791
> Ahg937469 jgi|Araly1|937469|scaffold_501660.1
Length=692
Score = 497 bits (269), Expect = 5e-140
Identities = 312/332 (94%), Gaps = 5/332 (2%)
Strand=Plus/Plus
Query 489 GGATATCAACTTTTGGGGCTCAACGTACATCACTTATTTTGCTATTCCTCATCTTCGAAA 548
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 GGATATTAACTTTTGGGGCTCAACGTACATCACTTATTTTGCTATTCCTCATCTTCGAAA 263
Query 549 AAGCAAAGGAAAAATTGTTGTGATTTCTTCTGCTACGGCAATTATACCTTTGCAAGCGGC 608
||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 264 AAGCAAAGGAAAAATTGTTGTGATTACTTCTGCTACGGCAATTATACCTTTGCCATCGGC 323
Query 609 AAGCGTCTATTCAGCAAGCAAAGCAGCTTTAGTAAAATTCTTTGAAACATTAAGAGTTGA 668
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 324 AAGCGTCTATTCAGCAAGCAAAGCAGCTTTATTAAAATTCTTTGAAACATTAAGAGTTGA 383
Query 669 GATCAGTCCC-GATATCAAAATAACAATCGCTCTTCCCGGATTTATATCTACGGATATGA 727
||||||||| | ||||||||||||||| ||| |||||| |||||||||||| |||||||
Sbjct 384 GATCAGTCCATG-TATCAAAATAACAATTGCTATTCCCGAATTTATATCTACAGATATGA 442
Query 728 CCACTCCTCAGTTTAAAGAAATGTATGGTTCAGATTTCATACTTTCGGAATCAGTGAGTC 787
|||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 443 CCACTC---AGTTTAAAGAAATGTATGGTTCAGATTTCATCCTTTCAGAATCAGTGAGTA 499
Query 788 GATGCGCAAAAGCGATCTTCAGAGGTATTGGT 819
|||||||||||| ||||||||||||||||||
Sbjct 500 AATGCGCAAAAGCCATCTTCAGAGGTATTGGT 531
Score = 219 bits (118), Expect = 4e-56
Identities = 164/186 (88%), Gaps = 3/186 (2%)
Strand=Plus/Plus
Query 28 AACATGGATATGCTTCACACTATTCTCAATTTTCTTCTTCCTCCTCTTACTATCAGTTTT 87
|||||||||| |||||||| |||||| ||| ||||||| ||||||||||| |||||||||
Sbjct 19 AACATGGATAAGCTTCACAATATTCTTAATCTTCTTCTACCTCCTCTTACCATCAGTTTT 78
Query 88 CTCGTCCTATTTTACCCATTTTATCTTTTTACCAAACTTATGAGTTGTC-TT--AAGCAC 144
|| ||| | |||||||||||||||||||| | ||||||| ||||||||| || ||| ||
Sbjct 79 CTTGTCTTCTTTTACCCATTTTATCTTTTGATCAAACTTGTGAGTTGTCTTTACAAGAAC 138
Query 145 CTTCACTTTGAAAACGTTACTGGGAAAGTAGTTCTAATCACCGGAGCTTCCTCCGGCATC 204
||| ||||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 139 ATTCGCTTTGAAAACGTTGCCGGAAAAGTAGTTCTAATCACCGGAGCTTCCTCCGGCATT 198
Query 205 GGAGAG 210
||||||
Sbjct 199 GGAGAG 204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37017352407
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5