BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G47350.2 Length=996 Score E Sequences producing significant alignments: (Bits) Value Ahg323349 jgi|Araly1|323349|fgenesh1_pm.C_scaffold_5000893 904 0.0 Ahg937469 jgi|Araly1|937469|scaffold_501660.1 497 5e-140 > Ahg323349 jgi|Araly1|323349|fgenesh1_pm.C_scaffold_5000893 Length=930 Score = 904 bits (489), Expect = 0.0 Identities = 695/795 (87%), Gaps = 11/795 (1%) Strand=Plus/Plus Query 31 ATGGATATGCTTCA-CACTATTCTCAATTTTCTTCTTCCTCCTCTTACTATCAGTTTTCT 89 |||||||||||| | ||| ||||||||| ||||||| ||||||||||| |||||||| || Sbjct 1 ATGGATATGCTT-ACCACCATTCTCAATCTTCTTCTACCTCCTCTTACCATCAGTTTCCT 59 Query 90 CGTCCTATTTTACCCATTTTATCTTTTTACCAAACTTATGAGTTGTC-T--TAAGCACCT 146 ||| | ||||||||||||||| |||| | ||||||| || ||||| | |||| |||| Sbjct 60 TGTCTTCTTTTACCCATTTTATGTTTTGATCAAACTTGTGCTTTGTCTTCATAAGTACCT 119 Query 147 TCACTTTGAAAACGTTA-CTGGGAAAGTAGTTCTAATCACCGGAGCTTCCTCCGGCATCG 205 |||||| ||||||| || | | ||||||||||||||||||||||||||||||||||||| Sbjct 120 TCACTTCGAAAACG-TAGCCAGAAAAGTAGTTCTAATCACCGGAGCTTCCTCCGGCATCG 178 Query 206 GAGAGCATGTGGCATACGAGTACGCAAAGAAAGGAGCAAAATTAGCTCTTGTTGCTCGAA 265 |||||||||||||||||||||||||||||||||||||| | || |||||||||||||||| Sbjct 179 GAGAGCATGTGGCATACGAGTACGCAAAGAAAGGAGCATATTTGGCTCTTGTTGCTCGAA 238 Query 266 GAAAGGATCGTCTAGAGATTGTAGCAGAAACATCACGTCAATTAGGATCTGGCGATGTCA 325 ||| ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| Sbjct 239 GAAGGGATCGTCTAGAGATTGTAGCTGAAACTTCACGTCAATTAGGATCTGGTAATGTCA 298 Query 326 TCATCATACCTGGTGATGTTTCTAATGTTGAGGACTGCAAGAAGTTCATCGACGAAACGA 385 ||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 299 TCACCATACCTGGTGATGTTTCTAATGTTGAGGACTGCAAGAAGTTCATCGATGAGACGA 358 Query 386 TTCATCATTTCGGAAAACTGGACCACCTGATCAACAATGCTGG-AGTACCTCAAACTGTT 444 ||| ||||||||||||||| ||||||||||||||||||||||| | || |||||||||| Sbjct 359 TTCGTCATTTCGGAAAACTAGACCACCTGATCAACAATGCTGGTA-TATTTCAAACTGTT 417 Query 445 ATATTCGAAGATTTCACACAAATTCAAGACGCTAATTCTATAATGGATATCAACTTTTGG 504 | |||||||||||||| |||||||||||||| ||| |||||||||| |||||||||||| Sbjct 418 CTTTTCGAAGATTTCACTCAAATTCAAGACGCAAATCCTATAATGGACATCAACTTTTGG 477 Query 505 GGCTCAACGTACATCACTTATTTTGCTATTCCTCATCTTCGAAAAAGCAAAGGAAAAATT 564 ||| |||| |||||||||||||| || ||||||||||||||||| || ||||||||||| Sbjct 478 GGCACAACATACATCACTTATTTCGCAATTCCTCATCTTCGAAAGAGTAAAGGAAAAATC 537 Query 565 GTTGTGATTTCTTCTGCTACGGCAATTATACCTTTGCAAGCGGCAAGCGTCTATTCAGCA 624 || | |||| | |||| | | |||| ||||||||||| | ||||||| | ||| ||||| Sbjct 538 GTCGCGATTACATCTGGTTCAGCAAATATACCTTTGCCATTGGCAAGCATATATGCAGCA 597 Query 625 AGCAAAGCAGCTTTAGTAAAATTCTTTGAAACATTAAGAGTTGAGATCAGTCCCGATATC 684 ||||||||||| ||| ||| ||||||||| ||||||||| | ||| | ||||| |||||| Sbjct 598 AGCAAAGCAGCCTTATTAAGATTCTTTGAGACATTAAGAATAGAGCTAAGTCCGGATATC 657 Query 685 AAAATAACAATCGCTCTTCCC-GGATTTATATCTACGGATATGACCACTCCTCAGTTTAA 743 ||||||||||| | ||| ||| ||| || |||| || ||||||||||| ||||| | || Sbjct 658 AAAATAACAATTGTTCT-CCCAGGAGTTGTATCAACAGATATGACCACACCTCACTGTAT 716 Query 744 AGAAATGTATGGTTCAGATTTCATACTTTCGGAATCAGTGAGTCGATGCGCAAAAGCGAT 803 |||| ||||||||||||||| || || ||||||||||||||| |||||||||||| || Sbjct 717 GGAAAAGTATGGTTCAGATTTTATTCTATCGGAATCAGTGAGTAAATGCGCAAAAGCAAT 776 Query 804 CTTCAGAGGTATTGG 818 ||||| ||||||||| Sbjct 777 CTTCAAAGGTATTGG 791 > Ahg937469 jgi|Araly1|937469|scaffold_501660.1 Length=692 Score = 497 bits (269), Expect = 5e-140 Identities = 312/332 (94%), Gaps = 5/332 (2%) Strand=Plus/Plus Query 489 GGATATCAACTTTTGGGGCTCAACGTACATCACTTATTTTGCTATTCCTCATCTTCGAAA 548 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 204 GGATATTAACTTTTGGGGCTCAACGTACATCACTTATTTTGCTATTCCTCATCTTCGAAA 263 Query 549 AAGCAAAGGAAAAATTGTTGTGATTTCTTCTGCTACGGCAATTATACCTTTGCAAGCGGC 608 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| Sbjct 264 AAGCAAAGGAAAAATTGTTGTGATTACTTCTGCTACGGCAATTATACCTTTGCCATCGGC 323 Query 609 AAGCGTCTATTCAGCAAGCAAAGCAGCTTTAGTAAAATTCTTTGAAACATTAAGAGTTGA 668 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 324 AAGCGTCTATTCAGCAAGCAAAGCAGCTTTATTAAAATTCTTTGAAACATTAAGAGTTGA 383 Query 669 GATCAGTCCC-GATATCAAAATAACAATCGCTCTTCCCGGATTTATATCTACGGATATGA 727 ||||||||| | ||||||||||||||| ||| |||||| |||||||||||| ||||||| Sbjct 384 GATCAGTCCATG-TATCAAAATAACAATTGCTATTCCCGAATTTATATCTACAGATATGA 442 Query 728 CCACTCCTCAGTTTAAAGAAATGTATGGTTCAGATTTCATACTTTCGGAATCAGTGAGTC 787 |||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 443 CCACTC---AGTTTAAAGAAATGTATGGTTCAGATTTCATCCTTTCAGAATCAGTGAGTA 499 Query 788 GATGCGCAAAAGCGATCTTCAGAGGTATTGGT 819 |||||||||||| |||||||||||||||||| Sbjct 500 AATGCGCAAAAGCCATCTTCAGAGGTATTGGT 531 Score = 219 bits (118), Expect = 4e-56 Identities = 164/186 (88%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 28 AACATGGATATGCTTCACACTATTCTCAATTTTCTTCTTCCTCCTCTTACTATCAGTTTT 87 |||||||||| |||||||| |||||| ||| ||||||| ||||||||||| ||||||||| Sbjct 19 AACATGGATAAGCTTCACAATATTCTTAATCTTCTTCTACCTCCTCTTACCATCAGTTTT 78 Query 88 CTCGTCCTATTTTACCCATTTTATCTTTTTACCAAACTTATGAGTTGTC-TT--AAGCAC 144 || ||| | |||||||||||||||||||| | ||||||| ||||||||| || ||| || Sbjct 79 CTTGTCTTCTTTTACCCATTTTATCTTTTGATCAAACTTGTGAGTTGTCTTTACAAGAAC 138 Query 145 CTTCACTTTGAAAACGTTACTGGGAAAGTAGTTCTAATCACCGGAGCTTCCTCCGGCATC 204 ||| ||||||||||||| | || ||||||||||||||||||||||||||||||||||| Sbjct 139 ATTCGCTTTGAAAACGTTGCCGGAAAAGTAGTTCTAATCACCGGAGCTTCCTCCGGCATT 198 Query 205 GGAGAG 210 |||||| Sbjct 199 GGAGAG 204 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37017352407 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5