BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47360.1
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323349 jgi|Araly1|323349|fgenesh1_pm.C_scaffold_5000893 1480 0.0
Ahg937469 jgi|Araly1|937469|scaffold_501660.1 189 3e-47
> Ahg323349 jgi|Araly1|323349|fgenesh1_pm.C_scaffold_5000893
Length=930
Score = 1480 bits (801), Expect = 0.0
Identities = 890/933 (95%), Gaps = 6/933 (1%)
Strand=Plus/Plus
Query 1 ATGGATATACTTACCACCATTCTCAATCTTCTTCTTCCTCCTCTTACTATCATCTTT-CT 59
|||||||| |||||||||||||||||||||||||| ||||||||||| |||| ||| ||
Sbjct 1 ATGGATATGCTTACCACCATTCTCAATCTTCTTCTACCTCCTCTTACCATCA-GTTTCCT 59
Query 60 CT-TCCTGTTTTACCCATTTTATCTTTTGATCAAACTTGTGCTTTGTCTTCGTAAGAACC 118
| || | ||||||||||||||| ||||||||||||||||||||||||||| |||| |||
Sbjct 60 -TGTCTTCTTTTACCCATTTTATGTTTTGATCAAACTTGTGCTTTGTCTTCATAAGTACC 118
Query 119 TTCACTTCGAAAACGTAGCCAGAAAAGTAGTTCTAATCACCGGAGCTTCCTCTGGCATCG 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 119 TTCACTTCGAAAACGTAGCCAGAAAAGTAGTTCTAATCACCGGAGCTTCCTCCGGCATCG 178
Query 179 GAGAGCATGTGGCATACGAATACGCAAAGAAAGGAGCATATTTGGCTCTTGTTGCTCGAA 238
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GAGAGCATGTGGCATACGAGTACGCAAAGAAAGGAGCATATTTGGCTCTTGTTGCTCGAA 238
Query 239 GAAGGGATCGTCTAGAGATTGTAGCAGAAACATCACGTCAATTAGGATCTGGTAATGTCA 298
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 239 GAAGGGATCGTCTAGAGATTGTAGCTGAAACTTCACGTCAATTAGGATCTGGTAATGTCA 298
Query 299 TCATCATACCTGGTGATGTTTCTAATGTTGAGGACTGCAAGAAGTTCATCGATGAGACGA 358
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCACCATACCTGGTGATGTTTCTAATGTTGAGGACTGCAAGAAGTTCATCGATGAGACGA 358
Query 359 TTCGTCATTTCGGAAAACTAGACCACCTGATCAATAATGCTGGTGTATTTCAAACTGTTC 418
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 359 TTCGTCATTTCGGAAAACTAGACCACCTGATCAACAATGCTGGTATATTTCAAACTGTTC 418
Query 419 TTTTCGAAGATTTCACACAAATTCAAGACGCAAATCCTATAATGGACATCAACTTTTGGG 478
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTTTCGAAGATTTCACTCAAATTCAAGACGCAAATCCTATAATGGACATCAACTTTTGGG 478
Query 479 GTACAACATACATCACCTATTTTGCAATTCCTCATCTTCGAAAGAGTAAAGGAAAAATCG 538
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 GCACAACATACATCACTTATTTCGCAATTCCTCATCTTCGAAAGAGTAAAGGAAAAATCG 538
Query 539 TCGCGATTACATCGGGTTCAGCAAATATACCTTTGCCATTGGCAAGCATCTATGCAGCAA 598
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 539 TCGCGATTACATCTGGTTCAGCAAATATACCTTTGCCATTGGCAAGCATATATGCAGCAA 598
Query 599 GCAAAGCAGCCTTATTAAGATTCTTTGAGACATTAAGAATAGAGCTAAGTCCTGATATCA 658
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 599 GCAAAGCAGCCTTATTAAGATTCTTTGAGACATTAAGAATAGAGCTAAGTCCGGATATCA 658
Query 659 AAATAACAATTGTTCTCCCAGGAGTTGTATCAACAGATATGACCACTCCTCACTGTATAG 718
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 659 AAATAACAATTGTTCTCCCAGGAGTTGTATCAACAGATATGACCACACCTCACTGTATGG 718
Query 719 AGAAGTATGGTTCGGATTTTATTCTATCGGAATCAGTGAGTAAATGCGCAAAGGCAATCT 778
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 719 AAAAGTATGGTTCAGATTTTATTCTATCGGAATCAGTGAGTAAATGCGCAAAAGCAATCT 778
Query 779 TCAGAGGTATTGGCAGAGGAGA-GACATACATAGAAGAACCATCTTGGATGAAATGGCTG 837
||| |||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||
Sbjct 779 TCAAAGGTATTGGCAGAGGAGATG-CATATATAGAAGAACCATCTTGGATGAAATGGTTG 837
Query 838 TTTATAATGAAAAATGTATGTCCCGAAATCGTTGATTACGGACTTAACTATCTATTTGTT 897
||||||||||||||||||||||| ||||||||||||||||| || |||| | ||||||||
Sbjct 838 TTTATAATGAAAAATGTATGTCCTGAAATCGTTGATTACGGTCTCAACTTTTTATTTGTT 897
Query 898 AGTTATCTAAAACCTTATTTCAAGCGTGATTGA 930
|||||||| ||||||||||||||||||||||||
Sbjct 898 AGTTATCTCAAACCTTATTTCAAGCGTGATTGA 930
> Ahg937469 jgi|Araly1|937469|scaffold_501660.1
Length=692
Score = 189 bits (102), Expect = 3e-47
Identities = 146/167 (87%), Gaps = 4/167 (2%)
Strand=Plus/Plus
Query 19 ATTCTCAATCTTCTTCTTCCTCCTCTTACTATCA-TCTTTCTCT-TCCTGTTTTACCCAT 76
||||| ||||||||||| ||||||||||| |||| | ||||| | || | ||||||||||
Sbjct 40 ATTCTTAATCTTCTTCTACCTCCTCTTACCATCAGT-TTTCT-TGTCTTCTTTTACCCAT 97
Query 77 TTTATCTTTTGATCAAACTTGTGCTTTGTCTTCGTAAGAACCTTCACTTCGAAAACGTAG 136
||||||||||||||||||||||| ||||||| |||||| ||| ||| |||||||| |
Sbjct 98 TTTATCTTTTGATCAAACTTGTGAGTTGTCTTTACAAGAACATTCGCTTTGAAAACGTTG 157
Query 137 CCAGAAAAGTAGTTCTAATCACCGGAGCTTCCTCTGGCATCGGAGAG 183
|| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 158 CCGGAAAAGTAGTTCTAATCACCGGAGCTTCCTCCGGCATTGGAGAG 204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34501239885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5