BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47370.2
Length=620
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937471 jgi|Araly1|937471|scaffold_501662.1 577 4e-164
Ahg496408 jgi|Araly1|496408|fgenesh2_kg.8__2224__AT5G62300.1 377 4e-104
> Ahg937471 jgi|Araly1|937471|scaffold_501662.1
Length=409
Score = 577 bits (312), Expect = 4e-164
Identities = 365/391 (93%), Gaps = 2/391 (1%)
Strand=Plus/Plus
Query 40 AAACGAGGTGTAACAAAACATGGCGTATGAACCGATGAAGCCCACGAAAGCTGGTTTGGA 99
||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 4 AAA-GAGGT-TAACAAAACATGGCGTATGAACCGATGAAACCCACTAAAGCTGGTTTAGA 61
Query 100 GGCTCCTCTGGAGCAGATTCATAAGATCAGGATCACTCTCTCTTCAAAAAATGTGAAGAA 159
| || || | |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 62 AGAACCCCTCGTGCAGATTCATAAGATCAGGATCACTCTCTCTTCAAAAAATGTCAAGAA 121
Query 160 CTTGGAAAAAGTGTGCACTGATTTGGTCCGTGGAGCTAAGGATAAGAGACTTAGAGTTAA 219
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 122 CTTGGAAAAAGTGTGCACTGACTTGGTTCGTGGAGCTAAGGACAAGAGACTTAGAGTTAA 181
Query 220 GGGACCAGTGAGAATGCCCACTAAGGTTCTTAAGATCACTACCAGAAAGGCACCTTGTGG 279
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 182 GGGACCAGTGAGAATGCCCACTAAGGTTCTTAAGATCACCACCAGAAAGGCACCTTGTGG 241
Query 280 TGAAGGTACCAATACTTGGGACAGGTTTGAGCTCAGGGTTCACAAGCGTGTCATCGATCT 339
|||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||
Sbjct 242 TGAAGGTACCAATACTTGGGACAGATTTGAACTTAGGGTTCACAAGCGTGTGATCGATCT 301
Query 340 CTTCAGCTCCCCTGACGTTGTTAAGCAAATCACGTCTATCACCATTGAGCCCGGTGTTGA 399
||||||||||||||| || |||||||||||||| |||||||||||||| || ||||||||
Sbjct 302 CTTCAGCTCCCCTGATGTGGTTAAGCAAATCACATCTATCACCATTGAACCTGGTGTTGA 361
Query 400 GGTCGAGGTCACTATTGCTGACTCTTAGACA 430
||| |||||||||||||||||||||||||||
Sbjct 362 GGTTGAGGTCACTATTGCTGACTCTTAGACA 392
> Ahg496408 jgi|Araly1|496408|fgenesh2_kg.8__2224__AT5G62300.1
Length=595
Score = 377 bits (204), Expect = 4e-104
Identities = 314/368 (85%), Gaps = 4/368 (1%)
Strand=Plus/Plus
Query 63 CGTATGAACCGATGAAGCCCACGAAA-GCTGGTTTGGAGGCTCCTCTGGAGCAGATTCAT 121
||||| |||| ||||| ||| |||| ||||||||||| | || || |||||||||||
Sbjct 104 CGTATCAACCAATGAA-ACCAGGAAAGGCTGGTTTGGAAGAACCACTCGAGCAGATTCAC 162
Query 122 AAGATCAGGATCACTCTCTCTTCAAAAAATGTGAAGAACTTGGAAAAAGTGTGCACTGAT 181
||||||||||| ||||||||||| || ||||| |||||| | || |||||||||||||||
Sbjct 163 AAGATCAGGATTACTCTCTCTTCCAAGAATGTCAAGAACCTCGAGAAAGTGTGCACTGAT 222
Query 182 TTGGTCCGTGGAGCTAAGGATAAGAGACTTAGAGTTAAGGGACCAGTGAGAATGCCCACT 241
|||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 223 TTGGTCCGTGGAGCCAAGGACAAGAGACTCAGAGTCAAGGGACCAGTGAGAATGCCCACC 282
Query 242 AAGGTTCTTAAGATCACTACCAGAAAGGCACCTTGTGGTGAAGGTACCAATACTTGGGAC 301
||||||||||||||||||||| |||| || |||||||||||||| ||||| || ||||||
Sbjct 283 AAGGTTCTTAAGATCACTACCCGAAAAGCTCCTTGTGGTGAAGGAACCAACACATGGGAC 342
Query 302 AGGTTTGAGCT-CAGGGTTCACAAGCGTGTCATCGATCTCTTCAGCTCCCCTGACGTTGT 360
|| ||||| || | |||| |||||||| || || ||||||||||| || ||||| || ||
Sbjct 343 AGATTTGAACTTC-GGGTACACAAGCGAGTGATTGATCTCTTCAGTTCTCCTGATGTGGT 401
Query 361 TAAGCAAATCACGTCTATCACCATTGAGCCCGGTGTTGAGGTCGAGGTCACTATTGCTGA 420
||||| ||||| || ||||||||||| || |||||||| || |||||||| || || ||
Sbjct 402 CAAGCAGATCACTTCCATCACCATTGAACCTGGTGTTGAAGTTGAGGTCACCATCGCCGA 461
Query 421 CTCTTAGA 428
||| ||||
Sbjct 462 CTCGTAGA 469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22683135615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5