BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47380.1
Length=776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485103 jgi|Araly1|485103|fgenesh2_kg.5__1095__AT3G47380.1 911 0.0
> Ahg485103 jgi|Araly1|485103|fgenesh2_kg.5__1095__AT3G47380.1
Length=640
Score = 911 bits (493), Expect = 0.0
Identities = 573/611 (94%), Gaps = 7/611 (1%)
Strand=Plus/Plus
Query 1 ATGGCAAAACAAATATTCTACACTCTCTTTCTATTCCTCTTATCCACGGCTATTCTCACG 60
|||||| ||||||||||||||||| |||| |||||||||||||||||| | || |||||
Sbjct 1 ATGGCACAACAAATATTCTACACTTTCTTCCTATTCCTCTTATCCACGACGATGCTCAC- 59
Query 61 GCGTCGTCCTCCGCCCCCAG-AGCCGCAATAACTTCAAAACGTGCTATAAACTTCATACA 119
| || ||| ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 60 G-GT-GTCTTCCGCCCCC-GTGGCCGCAATAACTTCAAAACGTGCTATAAACTTCATACA 116
Query 120 AGCCTCTTGCAAAGCCACAACATACCCAACCGTATGCGTCAACTCTCTCACCGGTTACGC 179
|||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| |
Sbjct 117 AGCCTCTTGCAAAGCCACTACATACCCAACCGTATGCGTCAACGCTCTCTCCGGTTACTC 176
Query 180 CAACTCCATCCAAACAAGCCCTCGACGTCTAGCCGAGACCGCACTCAATGTGACCGTGAC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CAACTCCATCCAAACAAGCCCTCGACGTCTAGCCGAGACCGCACTCAATGTGACCGTGAC 236
Query 240 TC-AGGCCCAGTCCACCAAGGTCTTCGTCTGGCGCTTGGGGCGTTTCACTAGTCTCAAGA 298
| |||| |||||||| ||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 237 -CGAGGCACAGTCCACTAAGGTCTTCGTCTGGCGCTTGGGGCGTTTCAAGACTCTTAAGA 295
Query 299 AACGAGAGATTCAAGCCGTTAAGGACTGCATCGAGGAGATCCATGATGCCGTTGACCGTT 358
||||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||||||
Sbjct 296 AACGAGAGATTCAAGCCATTAAGGACTGCATTGAGGAGATCAATGATGCTGTTGACCGTT 355
Query 359 TGACCATGTCGATCCATGAAGTGAAGATGTGTGGTAGTGCTAAAGGTCGTGACCAGTTTT 418
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TGACCAAGTCGATCCATGAAGTGAAGATGTGTGGTAGTGCTAAAGGTCGTGACCAGTTTT 415
Query 419 GGTTCCACATGAGCAATGCTCAAACGTGGACCAGCGCTGCTTTGACTAATGCAAACACTT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GGTTCCACATGAGCAATGCTCAAACGTGGACCAGCGCTGCTTTGACTAATGCAAACACTT 475
Query 479 GCTCCGATGGGTTTGCGGGTCGGGTCATGGATGGGCGGGTAAAGAACTCAGTAAGGGCAC 538
|||||||||||||||||||||||||||||||||||||| | |||||||| || ||||||
Sbjct 476 GCTCCGATGGGTTTGCGGGTCGGGTCATGGATGGGCGGATCAAGAACTCGGTCCGGGCAC 535
Query 539 GGATCTTGAATTTGGGAAGAGGAACTAGTAACGCTTTAGCCTTGATCAATGCTTTCGCTA 598
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 536 GGATCTTGAATTTGGGAAGAGGAACTAGCAACGCTTTAGCATTGATCAATGCTTTTGCTA 595
Query 599 AAAAATACTAA 609
|||||||||||
Sbjct 596 AAAAATACTAA 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28630310667
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5