BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G47390.1 Length=2182 Score E Sequences producing significant alignments: (Bits) Value Ahg897581 jgi|Araly1|897581|Al_scaffold_0005_1547 2113 0.0 > Ahg897581 jgi|Araly1|897581|Al_scaffold_0005_1547 Length=1740 Score = 2113 bits (1144), Expect = 0.0 Identities = 1254/1308 (96%), Gaps = 3/1308 (0%) Strand=Plus/Plus Query 383 ATGGCTCTTTCATTTCGAATTTCTTCGTCGTCTCCGTTAATCTGCAGAGCCACTCTCTCA 442 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTCTTTCATTTCGAATTT-GT--TCGTCTCCGTTAATCTGCAGAGCCACTCTCTCA 57 Query 443 AACGGCGACAACAGTCGTAACTACCACACGACTGATGCCGCTTTTATCCGACGCGCCGCC 502 ||||||||||| |||||||| ||||| ||| |||||||||||||||||||||||||||| Sbjct 58 AACGGCGACAATGGTCGTAACCACCACGCGATTGATGCCGCTTTTATCCGACGCGCCGCC 117 Query 503 GATTTGTCCGAAATGTCCGCCGGACTTACTTCACCTCACCCTAATTTCGGCTGTGTAATC 562 ||| || |||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 118 GATCTGGCCGAAATGTCCGCCGGACTTACTTCACCGCACCCTAATTTCGGTTGTGTAATC 177 Query 563 GCCACTTCTTCCGGTAAAGTCGCCGGAGAAGGATATCTATACGCTCAAGGTACTAAACCG 622 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 178 GCTACTTCTTCCGGTAAAGTCGCCGGAGAAGGATATCTATACGCTCAAGGCACTAAACCG 237 Query 623 GCGGAAGCGTTGGCTGTTGAAGCTGCCGGAGAGTTTTCTAGAGGCGCCACTGCTTATTTA 682 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 238 GCGGAAGCGTTGGCTGTTGAAGCTGCCGGAGAGTTTTCTAGAGGCTCCACTGCTTATTTG 297 Query 683 AACATGGAGCCTGGTGATTGTCATGGTGACCACACTGCTGTATCTGCTCTTGTTCAGGCA 742 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 AACATGGAGCCTGGTGATTGTCATGGTGACCACACTGCTGTATCTGCTCTTGTTCAGGCA 357 Query 743 GGAATTGAACGAGTTGTTGTTGGAATAAGGCATCCTTTGCAACATCTTAGAGGCTCTGCG 802 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 358 GGAATTGACCGAGTTGTTGTTGGAATAAGGCATCCTCTGCAACATCTTAGAGGCTCTGCG 417 Query 803 ATTCGTGAATTAAGAAGTCATGGTATCGAAGTTAATGTTCTTGGAGAAGACTTTGAGAGT 862 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 418 ATTCGTGAATTAAGAAGTCAAGGGATCGAAGTTAATGTTCTTGGAGAAGACTTTGAGAGT 477 Query 863 AAAGTTCTTGAGGATGCTCGGAAATCGTGTCTTCTTGTGAATGCTCCTTTGATTCATAGA 922 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 AAAGTTCTCGAGGATGCTCGGAAATCGTGTCTTCTTGTGAATGCTCCTTTGATTCATAGA 537 Query 923 GCTTGTTCTCGAGTTCCGTTCTCTGTTCTTAAGTATGCCATGACTCTTGATGGTAAGATT 982 ||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||||| Sbjct 538 GCTTGTTCTCGGGTTCCGTTTTCGGTTCTTAAGTATGCAATGACTCTTGATGGTAAGATT 597 Query 983 GCAGCGAGTAGTGGACATGCAGCATGGATAAGTAGTAAACTCTCTAGAACCCGAGTGTTC 1042 ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 598 GCAGCAAGTAGTGGACATGCAGCTTGGATAAGTAGTAAACTCTCTAGAACCCGAGTGTTT 657 Query 1043 GAGTTGCGAGGAGGAAGTGATGCTGTGATAGTTGGAGGAAACACAGTACGCCAAGATGAT 1102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 GAGTTGCGAGGAGGAAGTGATGCTGTGATAGTTGGAGGAAACACAGTACGCCAAGATGAT 717 Query 1103 CCTCGATTGACTGCAAGACACGGACAGGGTCACACCCCTACACGAATTGTGATGACTCAG 1162 |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||| Sbjct 718 CCTCGATTGACTGCAAGACATGGACAAGGTCACACCCCTACTCGAATTGTGATGACACAG 777 Query 1163 AGTCTTGATCTTCCTGAGAAAGCTAATCTATGGGATGTCTCGGAAGTATCTACCATAGTT 1222 ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| Sbjct 778 AGTCTTGATCTTCCTGAGAAAGCCAATCTATGGGATGTCGCGGAAGTATCTACCATTGTT 837 Query 1223 GTTACCCAAAGGGGTGCAAGAAAGAGTTTCCAGAAATTGCTTGCGTCCAAGGGTGTTGAA 1282 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 838 GTTACCCAAAGGGGTGCAAGAAAGAGTTTCCAGAAATTTCTTGCGTCCAAGGGTGTTGAA 897 Query 1283 GTTGTGGAGTTTGACATGTTGAATCCAAGAGAAGTTATGGAATATTTCCATCTCCGTGGA 1342 |||||||||||||||||||||||||| || |||||||||||||||||||| || |||||| Sbjct 898 GTTGTGGAGTTTGACATGTTGAATCCGAGGGAAGTTATGGAATATTTCCACCTTCGTGGA 957 Query 1343 TATCTTTCTATACTATGGGAGTGTGGGGGAACATTAGCTGCATCTGCTATATCATCCAGT 1402 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 TATCTTTCGATACTATGGGAGTGTGGGGGAACATTAGCTGCATCTGCTATATCATCCAGT 1017 Query 1403 GTCATCCACAAGGTTGTTGCTTTCGTTGCTCCAAAAATTATCGGTGGGAGTAAAGCACCT 1462 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 1018 GTCATCCACAAGGTTGTTGCTTTTGTTGCTCCAAAAATTATTGGTGGGAGTAAAGCACCT 1077 Query 1463 TCCCCTGTGGGTGACCTTGGGATGGTAGAGATGACACAAGCATTGAATTTAATTGATGTT 1522 ||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 1078 TCCCCCGTTGGTGACCTTGGGATGGTAGAGATGACACAAGCATTGAATCTAATCGATGTT 1137 Query 1523 TGTTATGAGCAGGTTGGTCCCGACATGCTTGTCAGCGGATTTCTTCAGCCCATACCAGAC 1582 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 TGCTACGAGCAGGTTGGTCCCGACATGCTTGTCAGCGGATTTCTTCAGCCCATACCAGAC 1197 Query 1583 CTCTTACCTGTTATCCCATCAGAGGATGCAACTGTCGAGATTGACCCCAGTGTTGACCCC 1642 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1198 CTTTTACCTGTTATCCCATCAGAGGATGCAACTGTTGAGATTGACCCCAGTGTTGACCCC 1257 Query 1643 TTTGAACCTAGTATCATATTCTTCTACAAAACATGGGACCTCTATGGA 1690 ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 1258 TTTGAACCTAGTATCATCTTCTTCTACAAAACATGGGACCTTTATGGA 1305 Score = 597 bits (323), Expect = 1e-169 Identities = 367/389 (94%), Gaps = 0/389 (0%) Strand=Plus/Plus Query 1794 AGGCAAACAAGTTTGTTGGGGTCGAAAATCCAAAGGCATATGATTGCGTTGAGAAAATTA 1853 ||||||||||||||||||||||||||||||| | |||| |||| |||||||||||||||| Sbjct 1352 AGGCAAACAAGTTTGTTGGGGTCGAAAATCCGATGGCACATGAATGCGTTGAGAAAATTA 1411 Query 1854 GAACAGCTAGAAGTCCAGAGGAGGCAGCTCTGATAGGCAGATCAACACTGAGACAGAAAC 1913 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1412 GAACAGCTAGAAGTCCAGAGGAGGCAGCTCTGATAGGCAGATCAACGCTGAGACAGAAAC 1471 Query 1914 CTGAACTGGTTCGGAATGATTGGGAAGATGTGAAGATAGAAGTAATGTACAAGGCTTTAA 1973 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| Sbjct 1472 CTGAACTGGTTCGGAATGACTGGGAAGATGTGAAGATAGAAGTAATGTATAAGGCTCTAA 1531 Query 1974 AATGCAAGTTCTCAACTTATCCTCACTTGAAATCAATGTTGCTCTCGACAATTGGAACAG 2033 |||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| | | Sbjct 1532 AATGTAAGTTCTCAACTTATCCTCATTTGAAATCAATGTTGCTTTCGACCGTTGGATCTG 1591 Query 2034 TTCTCGTGGAGGCTTCACCGCACGATCTATTCTGGGGAGGTGGCCGTGAAGGAGAAGGGC 2093 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1592 TTCTCGTGGAGGCTTCACCGCACGATCTATTCTGGGGAGGTGGTCGTGAAGGAGAAGGGC 1651 Query 2094 TTAACTATCTTGGTCGACTGCTTATGCAGCTTCGTTCTGAGTATCTGGGCGAATCCTCTG 2153 |||| |||||||||||||| ||||||||||||||||| |||||| ||| ||||||||||| Sbjct 1652 TTAATTATCTTGGTCGACTACTTATGCAGCTTCGTTCGGAGTATTTGGACGAATCCTCTG 1711 Query 2154 TTTCAGCTGAAAAGACTTCTTCGGCCTGA 2182 ||||||||||||| ||||||||||||||| Sbjct 1712 TTTCAGCTGAAAACACTTCTTCGGCCTGA 1740 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82122568220 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5