BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47390.1
Length=2182
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897581 jgi|Araly1|897581|Al_scaffold_0005_1547 2113 0.0
> Ahg897581 jgi|Araly1|897581|Al_scaffold_0005_1547
Length=1740
Score = 2113 bits (1144), Expect = 0.0
Identities = 1254/1308 (96%), Gaps = 3/1308 (0%)
Strand=Plus/Plus
Query 383 ATGGCTCTTTCATTTCGAATTTCTTCGTCGTCTCCGTTAATCTGCAGAGCCACTCTCTCA 442
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCTTTCATTTCGAATTT-GT--TCGTCTCCGTTAATCTGCAGAGCCACTCTCTCA 57
Query 443 AACGGCGACAACAGTCGTAACTACCACACGACTGATGCCGCTTTTATCCGACGCGCCGCC 502
||||||||||| |||||||| ||||| ||| ||||||||||||||||||||||||||||
Sbjct 58 AACGGCGACAATGGTCGTAACCACCACGCGATTGATGCCGCTTTTATCCGACGCGCCGCC 117
Query 503 GATTTGTCCGAAATGTCCGCCGGACTTACTTCACCTCACCCTAATTTCGGCTGTGTAATC 562
||| || |||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 118 GATCTGGCCGAAATGTCCGCCGGACTTACTTCACCGCACCCTAATTTCGGTTGTGTAATC 177
Query 563 GCCACTTCTTCCGGTAAAGTCGCCGGAGAAGGATATCTATACGCTCAAGGTACTAAACCG 622
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 GCTACTTCTTCCGGTAAAGTCGCCGGAGAAGGATATCTATACGCTCAAGGCACTAAACCG 237
Query 623 GCGGAAGCGTTGGCTGTTGAAGCTGCCGGAGAGTTTTCTAGAGGCGCCACTGCTTATTTA 682
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 238 GCGGAAGCGTTGGCTGTTGAAGCTGCCGGAGAGTTTTCTAGAGGCTCCACTGCTTATTTG 297
Query 683 AACATGGAGCCTGGTGATTGTCATGGTGACCACACTGCTGTATCTGCTCTTGTTCAGGCA 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AACATGGAGCCTGGTGATTGTCATGGTGACCACACTGCTGTATCTGCTCTTGTTCAGGCA 357
Query 743 GGAATTGAACGAGTTGTTGTTGGAATAAGGCATCCTTTGCAACATCTTAGAGGCTCTGCG 802
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 358 GGAATTGACCGAGTTGTTGTTGGAATAAGGCATCCTCTGCAACATCTTAGAGGCTCTGCG 417
Query 803 ATTCGTGAATTAAGAAGTCATGGTATCGAAGTTAATGTTCTTGGAGAAGACTTTGAGAGT 862
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 418 ATTCGTGAATTAAGAAGTCAAGGGATCGAAGTTAATGTTCTTGGAGAAGACTTTGAGAGT 477
Query 863 AAAGTTCTTGAGGATGCTCGGAAATCGTGTCTTCTTGTGAATGCTCCTTTGATTCATAGA 922
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AAAGTTCTCGAGGATGCTCGGAAATCGTGTCTTCTTGTGAATGCTCCTTTGATTCATAGA 537
Query 923 GCTTGTTCTCGAGTTCCGTTCTCTGTTCTTAAGTATGCCATGACTCTTGATGGTAAGATT 982
||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 538 GCTTGTTCTCGGGTTCCGTTTTCGGTTCTTAAGTATGCAATGACTCTTGATGGTAAGATT 597
Query 983 GCAGCGAGTAGTGGACATGCAGCATGGATAAGTAGTAAACTCTCTAGAACCCGAGTGTTC 1042
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 598 GCAGCAAGTAGTGGACATGCAGCTTGGATAAGTAGTAAACTCTCTAGAACCCGAGTGTTT 657
Query 1043 GAGTTGCGAGGAGGAAGTGATGCTGTGATAGTTGGAGGAAACACAGTACGCCAAGATGAT 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GAGTTGCGAGGAGGAAGTGATGCTGTGATAGTTGGAGGAAACACAGTACGCCAAGATGAT 717
Query 1103 CCTCGATTGACTGCAAGACACGGACAGGGTCACACCCCTACACGAATTGTGATGACTCAG 1162
|||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||
Sbjct 718 CCTCGATTGACTGCAAGACATGGACAAGGTCACACCCCTACTCGAATTGTGATGACACAG 777
Query 1163 AGTCTTGATCTTCCTGAGAAAGCTAATCTATGGGATGTCTCGGAAGTATCTACCATAGTT 1222
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct 778 AGTCTTGATCTTCCTGAGAAAGCCAATCTATGGGATGTCGCGGAAGTATCTACCATTGTT 837
Query 1223 GTTACCCAAAGGGGTGCAAGAAAGAGTTTCCAGAAATTGCTTGCGTCCAAGGGTGTTGAA 1282
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 838 GTTACCCAAAGGGGTGCAAGAAAGAGTTTCCAGAAATTTCTTGCGTCCAAGGGTGTTGAA 897
Query 1283 GTTGTGGAGTTTGACATGTTGAATCCAAGAGAAGTTATGGAATATTTCCATCTCCGTGGA 1342
|||||||||||||||||||||||||| || |||||||||||||||||||| || ||||||
Sbjct 898 GTTGTGGAGTTTGACATGTTGAATCCGAGGGAAGTTATGGAATATTTCCACCTTCGTGGA 957
Query 1343 TATCTTTCTATACTATGGGAGTGTGGGGGAACATTAGCTGCATCTGCTATATCATCCAGT 1402
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TATCTTTCGATACTATGGGAGTGTGGGGGAACATTAGCTGCATCTGCTATATCATCCAGT 1017
Query 1403 GTCATCCACAAGGTTGTTGCTTTCGTTGCTCCAAAAATTATCGGTGGGAGTAAAGCACCT 1462
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1018 GTCATCCACAAGGTTGTTGCTTTTGTTGCTCCAAAAATTATTGGTGGGAGTAAAGCACCT 1077
Query 1463 TCCCCTGTGGGTGACCTTGGGATGGTAGAGATGACACAAGCATTGAATTTAATTGATGTT 1522
||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1078 TCCCCCGTTGGTGACCTTGGGATGGTAGAGATGACACAAGCATTGAATCTAATCGATGTT 1137
Query 1523 TGTTATGAGCAGGTTGGTCCCGACATGCTTGTCAGCGGATTTCTTCAGCCCATACCAGAC 1582
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TGCTACGAGCAGGTTGGTCCCGACATGCTTGTCAGCGGATTTCTTCAGCCCATACCAGAC 1197
Query 1583 CTCTTACCTGTTATCCCATCAGAGGATGCAACTGTCGAGATTGACCCCAGTGTTGACCCC 1642
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1198 CTTTTACCTGTTATCCCATCAGAGGATGCAACTGTTGAGATTGACCCCAGTGTTGACCCC 1257
Query 1643 TTTGAACCTAGTATCATATTCTTCTACAAAACATGGGACCTCTATGGA 1690
||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1258 TTTGAACCTAGTATCATCTTCTTCTACAAAACATGGGACCTTTATGGA 1305
Score = 597 bits (323), Expect = 1e-169
Identities = 367/389 (94%), Gaps = 0/389 (0%)
Strand=Plus/Plus
Query 1794 AGGCAAACAAGTTTGTTGGGGTCGAAAATCCAAAGGCATATGATTGCGTTGAGAAAATTA 1853
||||||||||||||||||||||||||||||| | |||| |||| ||||||||||||||||
Sbjct 1352 AGGCAAACAAGTTTGTTGGGGTCGAAAATCCGATGGCACATGAATGCGTTGAGAAAATTA 1411
Query 1854 GAACAGCTAGAAGTCCAGAGGAGGCAGCTCTGATAGGCAGATCAACACTGAGACAGAAAC 1913
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1412 GAACAGCTAGAAGTCCAGAGGAGGCAGCTCTGATAGGCAGATCAACGCTGAGACAGAAAC 1471
Query 1914 CTGAACTGGTTCGGAATGATTGGGAAGATGTGAAGATAGAAGTAATGTACAAGGCTTTAA 1973
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||
Sbjct 1472 CTGAACTGGTTCGGAATGACTGGGAAGATGTGAAGATAGAAGTAATGTATAAGGCTCTAA 1531
Query 1974 AATGCAAGTTCTCAACTTATCCTCACTTGAAATCAATGTTGCTCTCGACAATTGGAACAG 2033
|||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| | |
Sbjct 1532 AATGTAAGTTCTCAACTTATCCTCATTTGAAATCAATGTTGCTTTCGACCGTTGGATCTG 1591
Query 2034 TTCTCGTGGAGGCTTCACCGCACGATCTATTCTGGGGAGGTGGCCGTGAAGGAGAAGGGC 2093
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1592 TTCTCGTGGAGGCTTCACCGCACGATCTATTCTGGGGAGGTGGTCGTGAAGGAGAAGGGC 1651
Query 2094 TTAACTATCTTGGTCGACTGCTTATGCAGCTTCGTTCTGAGTATCTGGGCGAATCCTCTG 2153
|||| |||||||||||||| ||||||||||||||||| |||||| ||| |||||||||||
Sbjct 1652 TTAATTATCTTGGTCGACTACTTATGCAGCTTCGTTCGGAGTATTTGGACGAATCCTCTG 1711
Query 2154 TTTCAGCTGAAAAGACTTCTTCGGCCTGA 2182
||||||||||||| |||||||||||||||
Sbjct 1712 TTTCAGCTGAAAACACTTCTTCGGCCTGA 1740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82122568220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5