BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47400.1
Length=2054
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937476 jgi|Araly1|937476|scaffold_501667.1 2828 0.0
> Ahg937476 jgi|Araly1|937476|scaffold_501667.1
Length=1825
Score = 2828 bits (1531), Expect = 0.0
Identities = 1730/1828 (95%), Gaps = 5/1828 (0%)
Strand=Plus/Plus
Query 19 ATACCCAAGAACTTCaaaaaaaTGCTTAGAGGCATCTTTCACATTTGCCTCTTGGCCTCA 78
||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATAGCCAAGAACTTC-AAAAAATGCTTAGAGGCATCTTCCACATTTGCCTCTTGGCCTCA 59
Query 79 TTTCTTCTTCTACCGTTCTCCTCCGCCGTACATGATAGTGGCTTCACCGGTGGTACCGAT 138
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 60 TTTCTTCTTCTACCGTTCTCCTCTGCTGTACACGATAGTGGCTTCACCGGTGGTACCGAT 119
Query 139 GCTCCTCCTCCGTGGGACCATAATGTTTCCCCACCACCAGAAACCGCACCATCCCCAACC 198
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 120 GCTCCTCCTCCGTGGGACCATAATGTTTCCACACCACCAGAAGCCTCACCATCCCCAACC 179
Query 199 CCCACCTCGAGTCCCTCTACAACCTCACCGCCATCTCCTGGACCGGTGGCTGCGCCATCT 258
|||||||||||||| ||||| |||| || || ||||| ||||| |||||||| ||||||
Sbjct 180 CCCACCTCGAGTCCTTCTACCGCCTCTCCACCGTCTCCCGGACCAGTGGCTGCACCATCT 239
Query 259 CCGATCAACAACGGCTCTGTCTCCGGGGACATGACATGGTGGTGCAACAAGACTCCACAC 318
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 240 CCGATCAACAACGGCTCTGTCTCTGGAGACATGACATGGTGGTGCAACAAGACTCCACAC 299
Query 319 GCTGAGACATGCAATTACTACTTCCGGAAGAGCTCACAAAACAACATTAACCTACGACCA 378
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 GCTGAGACATGCAATTACTACTTCCGGAAGAGCTCACAAAACAACATTAACATACGACCA 359
Query 379 CCAAGGTTCCGGTCCGAGTTCTTACGGATGCTGGTCAAGGTAGCACTTGACCAAGCCGTG 438
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 360 CCAAGGTTCCGGTCCGAGTTCTTACGAATGCTGGTCAAGATAGCACTTGACCAAGCCGTA 419
Query 439 ATCACACACAGTCAAACCGTTAAGTTTGGACCGAGCTGCACCAACAACCAAAGGAAAGCC 498
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 420 ATCACACACAGTCAAACCGTTAAGTTCGGACCAAGCTGCACCAACAACCAAAGGAAAGCC 479
Query 499 GCTTGGTCAGACTGCGTAAATCTCTTCCAAAACACGGTGGCTCAGCTGAACCGAACGCTC 558
|||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||
Sbjct 480 GCTTGGTCAGACTGCGTAAAGCTCTTTCAAAACACGGTGACTCAGCTAAACCGAACGCTC 539
Query 559 AAGGGACTTAACCCGGCGGCT-TCGAGTGATGTCAAATGTACGGACTTCGACGCACAAAC 617
||||||||||||||||||||| || ||||||||| ||||| |||||||||||||| ||
Sbjct 540 AAGGGACTTAACCCGGCGGCTAAGGA-TGATGTCAAGTGTACAGACTTCGACGCACAGAC 598
Query 618 GTGGCTCAGCACGGCTCAGACCAACATCGAGACGTGCCGTTCCGGATCCGAGGATCTTAA 677
||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||||
Sbjct 599 TTGGCTCAGCACGGCTCAAACCAACATTGAAACGTGCCGGTCCGGATCCGAGGATCTTAA 658
Query 678 CGTCTCGGATTTCGTCATGCCGGTGATATCCAACAAGAACTTGTCGGATTTGATTGGAAA 737
|||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 659 CGTCTCAGATTTCGTCATGCCGGCGATATCTAACAAGAACTTGTCGGATTTGATTGGAAA 718
Query 738 CTGCTTGGCCGTCAATGGAGTTCTCATGAAGCAACATGATCATACGACTACTGCTAACCA 797
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 719 CTGCTTGGCCGTCAATGGAGTTCTCATGAAGCAACATAATCATACGACTGCTGCTAACCA 778
Query 798 CAAAGAATACTTCCCAAGCTGGGTTTCAAGACATGAGAGACGATTACTCGTATCAGCCTC 857
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
Sbjct 779 CAAAGAATACTTCCCAAGCTGGGTTTCAAGACACGAGAGAAAATTACTCGTATCAGCCAC 838
Query 858 TTTAGCGAAATCGAGT-CCCCACCTAGTGGTGGCACAAGACAGGTCCGGCCATTTCCGGT 916
|||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTTAGCGAAATCGA-TGCCTCACCTAGTGGTGGCACAAGACAGGTCCGGCCATTTCCGGT 897
Query 917 CGATCCAAGCTGCCATAAACTTCGCAGCGAGAAGGAGATTCAAGTCAAGATTTGTGATAT 976
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 898 CGATCCAAGCTGCCATAAACTTCGCAGCAAAAAGGAGATTCAAGTCAAGATTTGTGATAT 957
Query 977 ATGTGAAGAAAGGTGTTTACCGAGAGAACATTGATGTCGGCAATGATAACCACAACATCA 1036
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 958 ATGTGAAGAAAGGTGTTTACCGAGAGAACATTGATGTCGGAAATGATAACCACAACATCA 1017
Query 1037 TGCTCGTCGGAGATGGCGAGAGAAAAACAATCATCACAAGTGGCCGAAGCGTCCAGCATG 1096
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1018 TGCTAGTCGGTGATGGCGAGAGAAAAACAATCATCACAAGTGGCCGAAGCGTCCAGCACG 1077
Query 1097 GCTACACCACCTATAACTCTGCAACCGGCGGCTTTGGAGGCCAAAGGTTTGTAGCAAAAG 1156
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1078 GCTACACCACCTATAACTCTGCAACCGCCGGCTTTGGAGGCCAAAGGTTCGTAGCAAAAG 1137
Query 1157 ACATGACATTCATCAACACGGCCGGGCCATTACGTGGGCAAGCTGTTGCGGTTCGATCAT 1216
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1138 ACATGACATTCATCAACACGGCGGGGCCATTACGTGGGCAAGCTGTGGCGGTTCGATCAT 1197
Query 1217 CCTCTGACCTCTCTGTTTTCTACCGTGTCGGTATCCATGGATTCCAAGACACCCTCTACA 1276
||||||||||| |||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 1198 CCTCTGACCTCGCTGTTTTCTACCGTGTTGGTATCCATGGCTTCCAAGACACGCTCTACA 1257
Query 1277 TCCATTCACAACGCCAGTTCTTTAGGGAATGTTATATCTCAGGCACCATCGACTTCATCT 1336
| || |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1258 TTCACTCACAACGTCAGTTCTTTAGGGAATGTTACATCTCAGGCACCATCGACTTTATCT 1317
Query 1337 TCGGAAATGCAGCTGTTGTCTTCCAGAACTGCATGATTCTCGTCCGGCGCCCTCTTCATG 1396
| ||||||||||||||||| |||||||||||||||||||| ||||| | ||||| ||||
Sbjct 1318 TTGGAAATGCAGCTGTTGTGTTCCAGAACTGCATGATTCTTGTCCGAAGACCTCTCCATG 1377
Query 1397 GCCAAGCCAACATCATAACAGCTCAAGGTCGTGGTGACCCTTTTCAGAACACAGGAATAA 1456
||||||||||||||||||| || |||||||| |||||||||||||| || ||||| ||||
Sbjct 1378 GCCAAGCCAACATCATAACCGCACAAGGTCGCGGTGACCCTTTTCAAAATACAGGGATAA 1437
Query 1457 CAATCCATAGCTCAAGGATAATTGCAGCTTCTGATTTGAAGCCTGTGATCCGAGCTTACA 1516
| |||||||||||||||||||| || || |||||||||||||||||||| ||||||||||
Sbjct 1438 CCATCCATAGCTCAAGGATAATCGCGGCATCTGATTTGAAGCCTGTGATTCGAGCTTACA 1497
Query 1517 AGACCTATTTAGGCCGACCGTGGCAAGCTTATTCACGCGTCACAATCATGAAGACCTATA 1576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 AGACCTATTTAGGCCGACCGTGGCAAGCTTATTCACGCGTCACAATCATGAAGACCTATA 1557
Query 1577 TAGATAACTCGATCAGCCCCTTGGGATGGTCTCCTTGGTTAAGAGGATCCAATTTTGCTC 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TAGATAACTCGATCAGCCCCTTGGGATGGTCTCCTTGGTTAAGAGGATCCAATTTTGCTC 1617
Query 1637 TTAATACAGTTTTCTATGGAGAGTATAAAAATTTTGGACCGGGGTCTTCCACAAGATGGC 1696
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1618 TTAATACAGTTTTCTATGGAGAGTATAAAAATTTTGGGCCGGGGTCTTCCACAAGATGGC 1677
Query 1697 GGGTCCGGTGGAAAGGATTCCACGCCATAACGAGCACCGCGGTTGCTTCTCGGTTTACGG 1756
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1678 GGGTCCGGTGGAAAGGATTCCACGCCATAACGAGCACCGCGGTTGCTTCTCGGTTTACTG 1737
Query 1757 TTGGAAGCCTTATAGCCGGCGGTTCATGGTTGCCAGCCACTGGCGTGCCTTTCAAGTCAG 1816
| ||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1738 TGGGAAGTCTTATCGCCGGCGGCTCATGGTTGCCAGCCACTGGCGTGCCGTTCAAGTCAG 1797
Query 1817 GGTTGTGAGGAGAGTCAGCATGTCCTAT 1844
||||||||||||||||||||||||||||
Sbjct 1798 GGTTGTGAGGAGAGTCAGCATGTCCTAT 1825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77247016860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5