BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G47400.1 Length=2054 Score E Sequences producing significant alignments: (Bits) Value Ahg937476 jgi|Araly1|937476|scaffold_501667.1 2828 0.0 > Ahg937476 jgi|Araly1|937476|scaffold_501667.1 Length=1825 Score = 2828 bits (1531), Expect = 0.0 Identities = 1730/1828 (95%), Gaps = 5/1828 (0%) Strand=Plus/Plus Query 19 ATACCCAAGAACTTCaaaaaaaTGCTTAGAGGCATCTTTCACATTTGCCTCTTGGCCTCA 78 ||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATAGCCAAGAACTTC-AAAAAATGCTTAGAGGCATCTTCCACATTTGCCTCTTGGCCTCA 59 Query 79 TTTCTTCTTCTACCGTTCTCCTCCGCCGTACATGATAGTGGCTTCACCGGTGGTACCGAT 138 ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| Sbjct 60 TTTCTTCTTCTACCGTTCTCCTCTGCTGTACACGATAGTGGCTTCACCGGTGGTACCGAT 119 Query 139 GCTCCTCCTCCGTGGGACCATAATGTTTCCCCACCACCAGAAACCGCACCATCCCCAACC 198 |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| Sbjct 120 GCTCCTCCTCCGTGGGACCATAATGTTTCCACACCACCAGAAGCCTCACCATCCCCAACC 179 Query 199 CCCACCTCGAGTCCCTCTACAACCTCACCGCCATCTCCTGGACCGGTGGCTGCGCCATCT 258 |||||||||||||| ||||| |||| || || ||||| ||||| |||||||| |||||| Sbjct 180 CCCACCTCGAGTCCTTCTACCGCCTCTCCACCGTCTCCCGGACCAGTGGCTGCACCATCT 239 Query 259 CCGATCAACAACGGCTCTGTCTCCGGGGACATGACATGGTGGTGCAACAAGACTCCACAC 318 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 240 CCGATCAACAACGGCTCTGTCTCTGGAGACATGACATGGTGGTGCAACAAGACTCCACAC 299 Query 319 GCTGAGACATGCAATTACTACTTCCGGAAGAGCTCACAAAACAACATTAACCTACGACCA 378 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 300 GCTGAGACATGCAATTACTACTTCCGGAAGAGCTCACAAAACAACATTAACATACGACCA 359 Query 379 CCAAGGTTCCGGTCCGAGTTCTTACGGATGCTGGTCAAGGTAGCACTTGACCAAGCCGTG 438 |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 360 CCAAGGTTCCGGTCCGAGTTCTTACGAATGCTGGTCAAGATAGCACTTGACCAAGCCGTA 419 Query 439 ATCACACACAGTCAAACCGTTAAGTTTGGACCGAGCTGCACCAACAACCAAAGGAAAGCC 498 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 420 ATCACACACAGTCAAACCGTTAAGTTCGGACCAAGCTGCACCAACAACCAAAGGAAAGCC 479 Query 499 GCTTGGTCAGACTGCGTAAATCTCTTCCAAAACACGGTGGCTCAGCTGAACCGAACGCTC 558 |||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||| Sbjct 480 GCTTGGTCAGACTGCGTAAAGCTCTTTCAAAACACGGTGACTCAGCTAAACCGAACGCTC 539 Query 559 AAGGGACTTAACCCGGCGGCT-TCGAGTGATGTCAAATGTACGGACTTCGACGCACAAAC 617 ||||||||||||||||||||| || ||||||||| ||||| |||||||||||||| || Sbjct 540 AAGGGACTTAACCCGGCGGCTAAGGA-TGATGTCAAGTGTACAGACTTCGACGCACAGAC 598 Query 618 GTGGCTCAGCACGGCTCAGACCAACATCGAGACGTGCCGTTCCGGATCCGAGGATCTTAA 677 ||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||| Sbjct 599 TTGGCTCAGCACGGCTCAAACCAACATTGAAACGTGCCGGTCCGGATCCGAGGATCTTAA 658 Query 678 CGTCTCGGATTTCGTCATGCCGGTGATATCCAACAAGAACTTGTCGGATTTGATTGGAAA 737 |||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 659 CGTCTCAGATTTCGTCATGCCGGCGATATCTAACAAGAACTTGTCGGATTTGATTGGAAA 718 Query 738 CTGCTTGGCCGTCAATGGAGTTCTCATGAAGCAACATGATCATACGACTACTGCTAACCA 797 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 719 CTGCTTGGCCGTCAATGGAGTTCTCATGAAGCAACATAATCATACGACTGCTGCTAACCA 778 Query 798 CAAAGAATACTTCCCAAGCTGGGTTTCAAGACATGAGAGACGATTACTCGTATCAGCCTC 857 ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| | Sbjct 779 CAAAGAATACTTCCCAAGCTGGGTTTCAAGACACGAGAGAAAATTACTCGTATCAGCCAC 838 Query 858 TTTAGCGAAATCGAGT-CCCCACCTAGTGGTGGCACAAGACAGGTCCGGCCATTTCCGGT 916 |||||||||||||| | || |||||||||||||||||||||||||||||||||||||||| Sbjct 839 TTTAGCGAAATCGA-TGCCTCACCTAGTGGTGGCACAAGACAGGTCCGGCCATTTCCGGT 897 Query 917 CGATCCAAGCTGCCATAAACTTCGCAGCGAGAAGGAGATTCAAGTCAAGATTTGTGATAT 976 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 898 CGATCCAAGCTGCCATAAACTTCGCAGCAAAAAGGAGATTCAAGTCAAGATTTGTGATAT 957 Query 977 ATGTGAAGAAAGGTGTTTACCGAGAGAACATTGATGTCGGCAATGATAACCACAACATCA 1036 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 958 ATGTGAAGAAAGGTGTTTACCGAGAGAACATTGATGTCGGAAATGATAACCACAACATCA 1017 Query 1037 TGCTCGTCGGAGATGGCGAGAGAAAAACAATCATCACAAGTGGCCGAAGCGTCCAGCATG 1096 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1018 TGCTAGTCGGTGATGGCGAGAGAAAAACAATCATCACAAGTGGCCGAAGCGTCCAGCACG 1077 Query 1097 GCTACACCACCTATAACTCTGCAACCGGCGGCTTTGGAGGCCAAAGGTTTGTAGCAAAAG 1156 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 1078 GCTACACCACCTATAACTCTGCAACCGCCGGCTTTGGAGGCCAAAGGTTCGTAGCAAAAG 1137 Query 1157 ACATGACATTCATCAACACGGCCGGGCCATTACGTGGGCAAGCTGTTGCGGTTCGATCAT 1216 |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 1138 ACATGACATTCATCAACACGGCGGGGCCATTACGTGGGCAAGCTGTGGCGGTTCGATCAT 1197 Query 1217 CCTCTGACCTCTCTGTTTTCTACCGTGTCGGTATCCATGGATTCCAAGACACCCTCTACA 1276 ||||||||||| |||||||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct 1198 CCTCTGACCTCGCTGTTTTCTACCGTGTTGGTATCCATGGCTTCCAAGACACGCTCTACA 1257 Query 1277 TCCATTCACAACGCCAGTTCTTTAGGGAATGTTATATCTCAGGCACCATCGACTTCATCT 1336 | || |||||||| |||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 1258 TTCACTCACAACGTCAGTTCTTTAGGGAATGTTACATCTCAGGCACCATCGACTTTATCT 1317 Query 1337 TCGGAAATGCAGCTGTTGTCTTCCAGAACTGCATGATTCTCGTCCGGCGCCCTCTTCATG 1396 | ||||||||||||||||| |||||||||||||||||||| ||||| | ||||| |||| Sbjct 1318 TTGGAAATGCAGCTGTTGTGTTCCAGAACTGCATGATTCTTGTCCGAAGACCTCTCCATG 1377 Query 1397 GCCAAGCCAACATCATAACAGCTCAAGGTCGTGGTGACCCTTTTCAGAACACAGGAATAA 1456 ||||||||||||||||||| || |||||||| |||||||||||||| || ||||| |||| Sbjct 1378 GCCAAGCCAACATCATAACCGCACAAGGTCGCGGTGACCCTTTTCAAAATACAGGGATAA 1437 Query 1457 CAATCCATAGCTCAAGGATAATTGCAGCTTCTGATTTGAAGCCTGTGATCCGAGCTTACA 1516 | |||||||||||||||||||| || || |||||||||||||||||||| |||||||||| Sbjct 1438 CCATCCATAGCTCAAGGATAATCGCGGCATCTGATTTGAAGCCTGTGATTCGAGCTTACA 1497 Query 1517 AGACCTATTTAGGCCGACCGTGGCAAGCTTATTCACGCGTCACAATCATGAAGACCTATA 1576 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1498 AGACCTATTTAGGCCGACCGTGGCAAGCTTATTCACGCGTCACAATCATGAAGACCTATA 1557 Query 1577 TAGATAACTCGATCAGCCCCTTGGGATGGTCTCCTTGGTTAAGAGGATCCAATTTTGCTC 1636 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1558 TAGATAACTCGATCAGCCCCTTGGGATGGTCTCCTTGGTTAAGAGGATCCAATTTTGCTC 1617 Query 1637 TTAATACAGTTTTCTATGGAGAGTATAAAAATTTTGGACCGGGGTCTTCCACAAGATGGC 1696 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1618 TTAATACAGTTTTCTATGGAGAGTATAAAAATTTTGGGCCGGGGTCTTCCACAAGATGGC 1677 Query 1697 GGGTCCGGTGGAAAGGATTCCACGCCATAACGAGCACCGCGGTTGCTTCTCGGTTTACGG 1756 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1678 GGGTCCGGTGGAAAGGATTCCACGCCATAACGAGCACCGCGGTTGCTTCTCGGTTTACTG 1737 Query 1757 TTGGAAGCCTTATAGCCGGCGGTTCATGGTTGCCAGCCACTGGCGTGCCTTTCAAGTCAG 1816 | ||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 1738 TGGGAAGTCTTATCGCCGGCGGCTCATGGTTGCCAGCCACTGGCGTGCCGTTCAAGTCAG 1797 Query 1817 GGTTGTGAGGAGAGTCAGCATGTCCTAT 1844 |||||||||||||||||||||||||||| Sbjct 1798 GGTTGTGAGGAGAGTCAGCATGTCCTAT 1825 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77247016860 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5