BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47410.1
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897583 jgi|Araly1|897583|Al_scaffold_0005_1549 734 0.0
> Ahg897583 jgi|Araly1|897583|Al_scaffold_0005_1549
Length=645
Score = 734 bits (397), Expect = 0.0
Identities = 582/668 (87%), Gaps = 25/668 (4%)
Strand=Plus/Plus
Query 1 ATGAAGGCAAAGATCAACTCAGTGTTGGAGAAGAAACTTGAAGAACTCGAGTCTCTTCTT 60
|||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGATGGCAAAGATAAACTCAGTCTTGGAGAAGAAACTTGAAGAACTCGAGTCTCTACTT 60
Query 61 GAAGTAATCACTTTTGACTATAATGATCCCAATGTTCGAAAAATGCAACTCGGAATCACA 120
|||||| |||||| | ||||| ||||||||||| |||||||| | ||||||||||| |
Sbjct 61 GAAGTAGTCACTTCTAACTATGATGATCCCAATATTCGAAAACTACAACTCGGAATTTTA 120
Query 121 TTCGCGAAGACCCTTCTAACGGCTGAGACATCGTCCCGGCCAAAGGATGTGGAAGGAGAA 180
||||| | ||||||| ||||||||||||||||||| | | |||||||||||||||||||
Sbjct 121 TTCGCCACGACCCTTTTAACGGCTGAGACATCGTCAAGACGAAAGGATGTGGAAGGAGAA 180
Query 181 GAAGACATTGAAGAGTTGTATAAACTGCGTTGCATGGCAGAGAGGTTATTCGAAATGGAG 240
|||||| ||||||| |||| |||||| |||||||||||| | ||||||| |||||||||
Sbjct 181 GAAGACGTTGAAGAATTGTTTAAACTACGTTGCATGGCAAATAGGTTATCCGAAATGGAA 240
Query 241 GCTTTTATCACCAACCAATTGCCCGGTCATGGTAATGGTTTATTGATCAAACCGGAAATG 300
|||||||||||||||| |||||||||||||||||| |||| ||| |||||||||| ||
Sbjct 241 GCTTTTATCACCAACCTATTGCCCGGTCATGGTAACGGTTCATTCATCAAACCGG---TG 297
Query 301 GAAAGTTTGGAAACTAATGCTTGTATTATCAACGGTAAAACCGGTGAGGATTACTCTTTG 360
||||||||||||||||||| | ||| | | ||| ||||||||| ||||||||| |||
Sbjct 298 GAAAGTTTGGAAACTAATGATGGTA--A-C---GGTGAAACCGGTGTGGATTACTCGTTG 351
Query 361 GTCGAATCTTGTCTAATCGAGTGTAAAGCagaagaagaagaaga-gaaggaggaagaagT 419
|| ||||||||||||| ||||| ||||||||||||||| ||||| || ||||||||| |
Sbjct 352 GTTGAATCTTGTCTAAACGAGTCTAAAGCAGAAGAAGAGGAAGAAGA-GGAGGAAGACCT 410
Query 420 AGAGGCTGAGCAGTGGCCATTGTTCCAAGAAGCGTCATCATCATCGGAGAAGGGAGAGGT 479
||||||||||||| | |||||||||||||| || | | ||||||| | | || | |
Sbjct 411 AGAGGCTGAGCAGCGACCATTGTTCCAAGATGC---A--A-CATCGGA-A-G--AG-G-T 458
Query 480 TACGATTCCGGCGGTGGCGACGGTTAAGGAAGATGTGATGGTTAGTGAAGTGAAAGAGAA 539
|||| ||||||||||||| |||||||| ||||| ||| ||||||| ||||||||||||||
Sbjct 459 TACGTTTCCGGCGGTGGCTACGGTTAAAGAAGAGGTGGTGGTTAGAGAAGTGAAAGAGAA 518
Query 540 GGGTTGTGTTGGTTTTAGGGCATTGGTTTGTTTCGGTTTAATTGGTTTAGTTGGGTGTGT 599
||| ||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||
Sbjct 519 GGGGTGTGTTGGTTTTAGGGCTTTGGTTTGTATCGGTTTAATTGGTTTATTTGGGTGTGT 578
Query 600 GATGAGTTTAGTTGGTTATATTGGTGATAT-CATGGAGGAGGATAAATATTTCCTTACCC 658
|||||||||||||||||||||||||||| | ||||||||||||| ||| ||| |||||||
Sbjct 579 GATGAGTTTAGTTGGTTATATTGGTGAT-TGCATGGAGGAGGATCAATTTTTACTTACCC 637
Query 659 CTACTTAA 666
| ||||||
Sbjct 638 CAACTTAA 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24436789797
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5