BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47420.1
Length=2016
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937481 jgi|Araly1|937481|scaffold_501672.1 2512 0.0
> Ahg937481 jgi|Araly1|937481|scaffold_501672.1
Length=1613
Score = 2512 bits (1360), Expect = 0.0
Identities = 1532/1616 (95%), Gaps = 7/1616 (0%)
Strand=Plus/Plus
Query 226 GAACTGAAGAACAAG--TTTTGATGGGTTCTCTAATGCAATCTGAACCAGAGATGGAGAA 283
||| |||||||| || |||| ||||||||| ||||||||||||| |||||||||||| |
Sbjct 1 GAATTGAAGAAC-AGTTTTTTCATGGGTTCTTTAATGCAATCTGAGCCAGAGATGGAGCA 59
Query 284 AAAACCGA-TAGGGATACGATTCTTGGAACGTATCAAAGGCTCAAAGCTCTCTTACAGTG 342
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 AAAACC-AGTAGGGATACGATTCTTGGAACGTATCAAAGGCTCAAAGCTCTCTTACAATG 118
Query 343 CTTATCAAGCCATAGTGTTGATCGTGACGTTTCTCGCTTACGCTAGCTATCACGCTGCAA 402
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 119 CTTATCAAGCCATAGTGTTGATCGTGACGTTTCTCGCTTACGCTAGTTATCACGCTGCAA 178
Query 403 GAAAAACAACAAGTATTGTCAAAAGTGCTCTTGATCCTCAATCTCCAGATACAGGACTAA 462
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 179 GAAAAACAACAAGCATTGTCAAGAGTGCTCTTGATCCTCAATCTCCAGATACAGGACTAA 238
Query 463 ACTCACTTCTTTTGAGATTTACTTCGTTTGGTTCCTCTGTAAAAGAAGAAGGTGGTTGGG 522
|||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 239 ACTCACTTCTTTTGAGGTTTACTTCTTTTGGCTCCTCTGTTAAAGAAGAAGGTGGTTGGG 298
Query 523 CTCC-TTTCAATGGTCCTGATGGTACGGTTTTGCTCGGTGAGATCGATGTTGCGTTTCTT 581
|||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTCCGTTT-AATGGTCCGGATGGTACGGTTTTGCTCGGTGAGATCGATGTTGCGTTTCTT 357
Query 582 GCGGTTTACGCTTTCGGAATGTATTTCGCTGGACATTTGGGGGATAGGATGAATCTTAGG 641
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 358 GCGGTTTACGCTTTCGGAATGTATTTTGCTGGACATTTGGGAGATAGGATGAATCTTAGG 417
Query 642 ATCTTCTTGACTGTTGGAATGATAGGAACTGGATTGTTTACTTCTCTGTTTGGAGTTGGT 701
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATCTTCTTGACAGTTGGAATGATAGGAACTGGATTGTTTACTTCTCTGTTTGGAGTTGGT 477
Query 702 TATTGGGGTAACATTCATAGCTTTTACTATTTCTTGATAATGCAAATGTTAGCTGGTTTG 761
||||||| ||| |||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 478 TATTGGGCTAATATTCATAGCTTTTACTATTTCTTGATTATGCAAATGTTGGCTGGATTG 537
Query 762 TTTCAATCTTCGGGTTGGCCATCGGTTGTTGCTGTTGTTGGAAACTGGTTTAACAAGAAG 821
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 538 TTTCAATCTTCGGGTTGGCCATCGGTTGTTGCTGTGGTTGGAAACTGGTTTAACAAGAAG 597
Query 822 AAGAGAGGTTTGATCATGGGGATATGGAATGCTCATACTTCTGTTGGGAACATTACTGGC 881
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 598 AAGAGAGGTTTGATTATGGGAATATGGAATGCTCATACTTCTGTTGGGAACATTACTGGC 657
Query 882 TCGTTGATCGCTGCTGCTATGTTGAGATATGGTTGGGGATGGTCTTTTGTTGTTCCTGGT 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TCGTTGATCGCTGCTGCTATGTTGAGATATGGTTGGGGATGGTCTTTTGTTGTTCCTGGT 717
Query 942 GTTATCATTGTGGTGATTGGTTTGGTGAATTACGCTTTCTTGCCTGTTAGTCCAGAGAAT 1001
||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |
Sbjct 718 GTTATCATTGTGGTGATTGGTTTGGTGAATTTCGCTTTCTTGCCGGTTAATCCAGAGATT 777
Query 1002 GTTGGAGCAGAGCGAGACGAGGTTCTTGATTCTTCGTCTGAGAAAATCGGAAACTCTGTT 1061
||||||||||||||||| |||| ||||||||| ||||||||||| |||||||||||||||
Sbjct 778 GTTGGAGCAGAGCGAGATGAGGATCTTGATTCGTCGTCTGAGAAGATCGGAAACTCTGTT 837
Query 1062 AATGAGCCGTTACTATTGAGCTCGTCGGATTCGGAAACCGATGACAAGAAACGAGCTGTT 1121
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AATGAGGCATTACTATTGAGCTCGTCGGATTCGGAAACCGATGACAAGAAACGAGCTGTT 897
Query 1122 GGATTCATTGAAGCGTGGAGGATTCCCGGAGTTGCGCCTTTCGCGCTCTGTCTCTTCTTT 1181
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 898 GGATTCATTGAAGCGTGGAGGATTCCCGGAGTTGCGCCTTTCGCGCTTTGTCTCTTCTTT 957
Query 1182 GCTAAGTTGGTCGCTTACACTTTCCTCTACTGGCTCCCATTTTACGTTAGCCATACAGCG 1241
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GCTAAATTGGTTGCTTACACTTTCCTCTACTGGCTCCCATTTTACGTTAGCCATACAGCG 1017
Query 1242 ATTGAAGGCGAATATTTATCGGACGAAACAGCGGGAAATCTTTCGACAATGTTCGATGTA 1301
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ATTGAAGGCGAGTATTTATCGGACGAAACAGCGGGAAATCTTTCGACAATGTTCGATGTA 1077
Query 1302 GGAGGTGTGGTTGGTGGAATCATGGCTGGTTACATTTCAGACCGAATTGGTGCAAGAGCT 1361
||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1078 GGAGGTGTGGTCGGAGGAATCCTGGCTGGTTACATTTCAGACCGAATTGGTGCAAGAGCG 1137
Query 1362 ATTACGGCTGCGAGTTTCATGTACTGCTCAATTCCAGCTTTGTTCTTCTACCGTAGCTAC 1421
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1138 ATTACGGCTGCGAGTTTCATGTACTGCTCAATCCCAGCTTTGTTCTTCTACCGAAGCTAC 1197
Query 1422 GGACATGTATCGTTATTAGCCAACGCGTCTCTCATGTTCTTGACCGGGATGTTGGTTAAC 1481
|||||||| |||||| ||||||| || || ||||||||| | ||||| |||||||||||
Sbjct 1198 GGACATGTTTCGTTACTAGCCAATGCCTCGCTCATGTTCCTAACCGGAATGTTGGTTAAT 1257
Query 1482 GGTCCTTACGCTTTGATTACAACGGCAGTTTCAGCTGATCTTGGAACACACAGCTCGTTG 1541
|| ||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1258 GGACCTTACGCTCTGATCACAACGGCAGTTTCAGCCGATCTTGGAACACACAGCTCATTG 1317
Query 1542 AAAGGAAACTCGAGAGCTTTGGCTACGGTAACGGCTATTATCGATGGAACGGGATCCGTT 1601
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1318 AAAGGAAACTCGAGAGCTTTGGCTACGGTAACGGCTATAATCGATGGAACGGGATCAGTT 1377
Query 1602 GGAGCGGCGGTCGGACCCTTACTAACGGGTTACATATCGTCGAGGGGTAGCTGGACCGCG 1661
|| || ||||| || || || ||||| |||||||||||||||| ||||||||||| ||||
Sbjct 1378 GGTGCTGCGGTTGGGCCATTGCTAACAGGTTACATATCGTCGAAGGGTAGCTGGAGCGCG 1437
Query 1662 GTTTTCACAATGTTGATGGGAGCTGCGTTTGTGGCTGGACTATTGTTGACGAGGCTGGTA 1721
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GTTTTCACAATGTTGATGGGAGCTGCGTTTGTGGCTGGACTATTGTTGACGAGGCTGGTT 1497
Query 1722 ATGGCCGAAGTAGCGGAGAAGATAGCTGAGTCTAGGCCATCGGAAGAATGTAGATCTCCG 1781
|||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 1498 ATGGCCGAAGTAGCGGAGAAGATAGCTGAGTCGAGACCATCGGAGGAATGTAGATCTCCA 1557
Query 1782 GTGGACTATGTCCAAGATCATGTGATGGAAGTGTGATCACCAACTTTGATCGCCAt 1837
||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GTGGACTCCGTCCAAGATCATGTGATGGAAGTGTGATCACCAACTTTGATCGCCAT 1613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75799587550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5