BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47430.1
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485107 jgi|Araly1|485107|fgenesh2_kg.5__1099__AT3G47430.1 1332 0.0
> Ahg485107 jgi|Araly1|485107|fgenesh2_kg.5__1099__AT3G47430.1
Length=953
Score = 1332 bits (721), Expect = 0.0
Identities = 899/979 (92%), Gaps = 35/979 (4%)
Strand=Plus/Plus
Query 10 TATCAAAACATGAGACAACAAGAGCAAGTATTAG---CCACCACAAAGCAATCATCTTaa 66
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
Sbjct 1 TATCAAAACATGAGACAACAAGAGCAAGTATTAGCCACCACCACAAAGTAATCATCTT-A 59
Query 67 aactcaaaccccaaaacaaacaaaagacaaaacCCGATTGTTTCGAGCACAAACGTCACT 126
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 60 AACTCAAACCTCAAAACAAACAAAAGACAAAACCCGATTACATCGAGCACAAACGTCACT 119
Query 127 TGTGGTTTACATCGTCTTCATCATCTCCATAACTTCATA-TCTCCTCTC-CTTCCGCTGC 184
||||||||||||||||||||||||||||||||||||||| | ||||||| ||| | || |
Sbjct 120 TGTGGTTTACATCGTCTTCATCATCTCCATAACTTCATATTTTCCTCTCTCTT-C-CTTC 177
Query 185 CACCGTTAGCGATGTCTTTGGACACTGTGGACAAACTGGTGGTGTTCTTGGCCAAGAGAG 244
||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct 178 TACCGTTAGCCATGTCTTTGGACACAGTGGACAAGCTGGTAGTGTTCTTGGCCAAGAGAG 237
Query 245 ACGGAATAGACAAGCTTGTGAAGACATTCCAATACGTGGCCAAGCTCGCGTGCTGGCA-T 303
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 238 ACGGAATAGACAAGCTTGTGAAGACATTCCAATACGTGGCCAAGCTTGCGTGCTGGCGCT 297
Query 304 GTTGAAGCCACACGACCCGAAGCCGCCGATAGGTTCAAGAAGTGGGAGGTCGCCTCCGGT 363
|||| ||||| | ||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 298 -TTGAGGCCACGCAACCGGAAGCCGCCGATAGGTTCAAGAAGTGGGAGGTCGCGTCCGGT 356
Query 364 CTCAGCCGCAAAGCCTTCAGGACCGGGAGATCTCTCACGGGGTTCAATGCGCTGAGACGA 423
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 357 CTCAGCCGCAAAGCCTTCAGGACCGGGAGATCTCTCACGGGATTCAATGCGCTGAGACGA 416
Query 424 AACCCCGGGGCAACCCCGATGATCCGTTTCTTGGCGGTCCTAGCCAATTCAGGGGAAATG 483
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 417 AACCCCGGGGCAACCCCGGCGATCCGTTTCTTGGCGGTCCTAGCCAATTCAGGAGAAATG 476
Query 484 GTTTACTTCTTCTTT-GATCATTTTCTTTGGTTATCAAGAATTGGTTCAATAGACGCCAA 542
||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 477 GTTTACTTCTT-TTTCGATCATTTTCTTTGGTTATCAAGAATTGGTACAATAGACGCCAA 535
Query 543 GCTCGCCAAGAAAATGAGTTTCATATCCGCTTTTGGCGAATCTTTCGGCTACACTTTCTT 602
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 536 GCTCGCCAAGAAAATGAGTTTCATCTCCGCTTTTGGCGAATCTTTCGGCTACACTTTCTT 595
Query 603 CATCATCATTGATTGCATCTTCATAAAGCAAAGACTCAAATCCTT-AAAAAAGCTCCAG- 660
|||| ||||||||||||| ||||||| |||||||||||||||||| |||||| |||| |
Sbjct 596 CATCGTCATTGATTGCATTTTCATAAGGCAAAGACTCAAATCCTTGAAAAAA-CTCCGGT 654
Query 661 CATTCGACCGATGAACCGAAAGAAGAAATCGGCGCCAAAATTAGCGAGATTCGGGGAGAT 720
||| | | |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 655 CAT-C--C-GATGAACCGAAAGACGAAATCGGCGCAAAAATTAGCGAGATTCGGGGAGAT 710
Query 721 ATAGTAATGAGGTTGATGGGAATTTCAGCCAACGTTGCGGATTTACTTATAGCATTGGCA 780
|||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||
Sbjct 711 ATAGTAATGAGGTTGATGGGAATTTCTGCCAACATTGCGGATTTACTTATCGCATTGGCA 770
Query 781 GAAATTCACCCAAACCCCTTTTGTAACCACACCATTACACTCGGTATAAGCGGTTTAGTT 840
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 771 GAAATTCACCCAAACCCCTTTTGTAACCACACGGTTACACTCGGTATAAGCGGTTTAGTT 830
Query 841 TCAGCTTGGGCCGGTTGGTATAGGAACTGGCCATCGTGAGATGTAATAAAATCAAATGTT 900
|| || |||||||| |||||||| || ||||||||||||||||||||||| | ||||||
Sbjct 831 TCGGCATGGGCCGGCTGGTATAGAAATTGGCCATCGTGAGATGTAATAAAGGCTAATGTT 890
Query 901 TGTTGTTTTGAATGAACGTATCAAACGTGTAATGTAACTCACTTGAATATATGAAACATT 960
|||||||| | ||| | | ||||||||||||||||||||||||||||||
Sbjct 891 TGTTGTTT-G---GAA--T-------G---AATGTAACTCACTTGAATATATGAAACATT 934
Query 961 TCTATTTTACATTATCTAT 979
||||||||||||||| |||
Sbjct 935 TCTATTTTACATTATTTAT 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36369262818
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5