BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47440.1
Length=971
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937483 jgi|Araly1|937483|scaffold_501674.1 1221 0.0
> Ahg937483 jgi|Araly1|937483|scaffold_501674.1
Length=811
Score = 1221 bits (661), Expect = 0.0
Identities = 758/806 (94%), Gaps = 2/806 (0%)
Strand=Plus/Plus
Query 14 TTTTCGAAAGAAATTGATGAGAAGAATGATTCCAACATCGTTTTCAAGTAAGTTTCAAGG 73
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 5 TTTTCGAAAGAAATTGATGAGAACAATGATTCCAACATCGTTTTCAAGTAGGTTTCAAGG 64
Query 74 AG-TACTAAGTATGAATGCGTTGAGATGTTATGTATCAGAGTTTATCTCAACCTTCTTCT 132
|| || ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 65 AGTTA-TAAGTATGAATGCGTTGCGATGTTATGTATCAGAGTTTATCTCTACCTTCTTCT 123
Query 133 TCGTCCTCGCAGCCGTTGGTTCTGTCATGTCTTCAAGGAAATTGATGGCTGGTGATGTGT 192
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 124 TCGTCCTCGCAGCCGTTGGTTCTGTCATGTCTTCAAGGAAACTGATGGCTGGTGATGTGT 183
Query 193 CTGGTCCGTTTGGTGTTTTAATACCGGCGATTGCTAATGCGTTGGCGTTATCATCGTCAG 252
|||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 184 CTGGTCCGTTTGGTGTATTAATACCGGCGATTGCAAATGCGTTTGCGTTATCATCGTCGG 243
Query 253 TTTACATCTCTTGGAACGTCTCTGGTGGTCATGTGAATCCAGCGGTTACGTTTGCGATGG 312
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 244 TTTACATCTCTTGGAACGTCTCTGGTGGTCATGTGAATCCAGCAGTTACGTTTGGGATGG 303
Query 313 CTGTTGCTGGTCGGATTAGCGTTCCAACCGCTATGTTTTATTGGACTTCTCAGATGATTG 372
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CGGTTGCTGGTCGGATTAGTGTTCCAACCGCTATGTTTTATTGGACTTCTCAGATGATTG 363
Query 373 CCTCTGTTATGGCTTGCCTTGTTCTTAAAGTAACCGTCATGGAACAGCACGTACCGATTT 432
|||||||||||||||| ||||| ||||||||||| ||| | |||||||||||||| || |
Sbjct 364 CCTCTGTTATGGCTTGTCTTGTCCTTAAAGTAACTGTCGTTGAACAGCACGTACCAATCT 423
Query 433 ATAAGATTGCTGGAGAAATGACTGGATTTGGAGCATCTGTTCTTGAAGGTGTTTTAGCTT 492
|||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 424 ATAAGATTGCCGGAGAAATGACGGGATTTGGAGCATCGGTTCTTGAAGGTGTTTTAGCGT 483
Query 493 TCGTCTTGGTTTATACTGTGTTCACGGCTAGCGATCCCAGACGTGGGCTACCTTTAGCAG 552
|||||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||
Sbjct 484 TCGTCTTGGTTTATACTGTGTTTACGGCTAATGATCCGAGACGTGGTCTACCTTTAGCAG 543
Query 553 TGGGACCTATATTTATAGGGTTTGTTGCGGGAGCCAATGTTCTAGCCGCTGGTCCATTCT 612
||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||||||||
Sbjct 544 TGGGACCTATATTCATAGGATTTGTAGCGGGTGCGAATGTTCTAGCTGCTGGTCCATTCT 603
Query 613 CTGGAGGTTCAATGAATCCTGCGTGTGCCTTTGGGTCGGCGATGGTTTACGGAAGCTTTA 672
|||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 604 CTGGAGGTTCGATGAATCCGGCGTGTGCCTTTGGATCGGCGATGGTTTACGGAAGTTTTA 663
Query 673 AGAACCAAGCTGTGTATTGGGTTGGGCCTCTGCTTGGAGGAGCCACAGCTGCTTTAGTGT 732
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 664 AGAACCAAGCTGTGTATTGGGTTGGGCCTCTGCTTGGAGGAGCAACAGCTGCGTTAGTGT 723
Query 733 ATGATAACGTGGTGGTCCCTGTAGAAGATGATCGTGGTTCATCTACTGGTGATGCCATTG 792
|||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||
Sbjct 724 ATGATAACGTGGTGGTTCCGGCAGAAGATGATCGTGGTTCATCTACTGGAGATGCCATTG 783
Query 793 GTGTGTAATGACTTGTTTATACTGTT 818
|||||||||||||||||| |||||||
Sbjct 784 GTGTGTAATGACTTGTTTTTACTGTT 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36064279482
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5