BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47450.1
Length=1911
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485109 jgi|Araly1|485109|fgenesh2_kg.5__1101__AT3G47450.2 2782 0.0
> Ahg485109 jgi|Araly1|485109|fgenesh2_kg.5__1101__AT3G47450.2
Length=1849
Score = 2782 bits (1506), Expect = 0.0
Identities = 1706/1801 (95%), Gaps = 19/1801 (1%)
Strand=Plus/Plus
Query 87 AAAATCTCAGCAATGGCGCTACGAACACTCTCAACGTTTCCTTCTCTTCCTCGTCGCCAC 146
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 59 AAAATCTCATCAATGGCGCTACGAACACTCTCAACGTTTCCTTCTCTTCCTCGTCGCTAC 118
Query 147 ACAACGACGAGACGTGAACCCAATCTCACCGTCATTTACCGTAATCCGA-CGACATCAAT 205
|| | ||||||||||||||||||||||||||||||||||| ||||| | | || |||||
Sbjct 119 AC-A--ACGAGACGTGAACCCAATCTCACCGTCATTTACCGAAATCC-AGCAACGTCAAT 174
Query 206 CGTCTGTAAATCAATAGCTAATTCAGAACCACCAGTTTCACTCTCGGAACGAGATGGATT 265
|||||| |||||||| |||||||| |||| ||||||||||||||| ||||||||||||||
Sbjct 175 CGTCTGCAAATCAATCGCTAATTCCGAACAACCAGTTTCACTCTCAGAACGAGATGGATT 234
Query 266 TGCGGCGGCTGCTCCAACCCCTGGAGAAAGGTTCCTGGAGAACCAACGAGCTCATGAAGC 325
|||||||||||||||||||||||||| |||||| ||||| ||||||||||||| |||||
Sbjct 235 CGCGGCGGCTGCTCCAACCCCTGGAGAGAGGTTCTTGGAGCACCAACGAGCTCACGAAGC 294
Query 326 TCagaaagtagtgaagaaagagatcaaaaaggagaagaagaaaaagaaagaggagaTTAT 385
|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 295 TCAGAAAGTAGTGAAGAAAGAGCTCAAAAAAGAAAAGAAGAAAAAGAAAGAGGAGATTAT 354
Query 386 TGCACGGAAAGTTGTTGATACCTCAGTCTCATGTTGTTACGGCTGCGGAGCTCCGTTACA 445
|| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 355 TGTACGGAAAGTTGTTGATACCTCAATCTCATGTTGTTACGGCTGCGGTGCTCCGTTACA 414
Query 446 AACTTCCGACGTCGATTCTCCGGGATTTGTCGATTTGGTTACTTATGAATTGAAGAAGAA 505
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 415 AACTTCCGACGTCGATTCTCCGGGATTTGTCGATTTAGTTACTTACGAATTGAAGAAGAA 474
Query 506 GCATCACCAGTTAAGAACTATGATATGTGGAAGATGTCAGCTATTGTCACATGGACATAT 565
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 475 ACATCACCAATTAAGAACTATGATATGTGGAAGATGTCAGCTATTGTCTCATGGACATAT 534
Query 566 GATTACAGCAGTTGGTGGTAATGGAGGTTATCCAGGTGGGAAACAATTTGTATCAGCTGA 625
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 535 GATTACAGCAGTTGGTGGTAATGGAGGATATCCAGGTGGGAAACAATTTGTATCAGCTGA 594
Query 626 TGAACTTCGTGAGAAACTTTCTCATTTACGCCATGAGAAAGCTTTGATTGTTAAATTGGT 685
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TGAACTTCGTGAGAAGCTTTCTCATTTACGCCATGAGAAAGCTTTGATTGTTAAATTGGT 654
Query 686 TGATATAGTGGATTTTAATGGAAGCTTTTTAGCTCGTGTTCGTGATTTAGTTGGAGCTAA 745
|||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 655 TGATATTGTGGATTTTCATGGAAGCTTTTTAGCTCGTGTTCGTGACTTAGTTGGAGCTAA 714
Query 746 TCCGATTATACTTGTTATAACTAAGATTGATCTTCTTCCAAAAGGAACGGATATGAATTG 805
|||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 715 TCCGATTATACTAGTTATAACTAAGATTGATCTTCTTCCGAAAGGAACAGATATGAATTG 774
Query 806 TATCGGGGATTGGGTTGTGGAAGTGACCATGAGGAAAAAGCTTAATGTCTTGAGTGTCCA 865
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TATTGGGGATTGGGTCGTAGAAGTGACCATGAGGAAAAAGCTTAATGTCTTGAGTGTCCA 834
Query 866 TCTCACAAGTTCAAAGTCCCTGGATGGAGTTAGCGGAGTTGCATCAGAGATCCAGAAGGA 925
||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 835 TCTCACAAGCTCGAAGTCTCTGGATGGAGTTAGCGGAGTTGCATCAGAAATCCAGAAGGA 894
Query 926 GAAAAAGGGACGAGATGTCTACATTCTGGGTGCAGCTAACGTAGGGAAGTCAGCATTCAT 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GAAAAAGGGACGAGATGTCTACATTCTGGGTGCAGCTAACGTAGGGAAGTCAGCATTCAT 954
Query 986 CAATGCTTTGCTGAAAACGATGGCCGAAAGGGATCCTGTTGCAGCAGCGGCACAAAAGTA 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 CAATGCTTTGCTGAAAACGATGGCCGAAAGGGATCCTGTTGCAGCAGCGGCACAAAAGTA 1014
Query 1046 CAAACCAATTCAATCTGCTGTCCCTGGAACCACCTTGGGTCCAATTCAGATCAACGCTTT 1105
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1015 CAAACCAATTCAATCTGCTGTCCCTGGAACCACTTTGGGTCCAATTCAGATCAACGCCTT 1074
Query 1106 CGTCGGAGGAGAGAAGTTGTATGACACACCGGGTGTGCACCTACACCACAGGCAAGCAGC 1165
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1075 CCTCGGAGGAGAGAAGTTGTATGATACACCGGGTGTGCACCTACACCACAGGCAAGCAGC 1134
Query 1166 TGTCGTTCATTCAGATGATTTACCCGCCCTTGCTCCTCAAAATCGTCTCAGAGGCCAATC 1225
||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 1135 TGTCGTTCATTCAGATGATTTACCCGCCCTTGCTCCTCAAAATCGGCTTAGAGGCCAGTC 1194
Query 1226 TTTCGATATTTCAACTTTGCCAACTCAATCGTCAAGTAGTCCCAAGGGTGAGAGCTTAAA 1285
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1195 TTTCGATATTTCAACTTTGCCAACTCAATCGTCAAGTAGTCCCAAGGGGGAGAGTTTAAA 1254
Query 1286 CGGTTATACATTTTTCTGGGGAGGTCTCGTTAGGATTGACATCTTGAAGGCTCTACCGGA 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 CGGTTATACATTTTTCTGGGGAGGTCTCGTTAGGATTGACATCTTGAAGGCTCTACCGGA 1314
Query 1346 AACATGTTTCACATTCTATGGACCAAAAGCTCTTGAGATTCATGCAGTACCAACCAAAAC 1405
||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct 1315 AACATGTTTCACATTCTATGGACCAAAGGCTCTTGATATTCATGTAGTACCAACCAAAAC 1374
Query 1406 AGCGACTGCCTTTTACGAGGCAA-AACTGGGTGTGCTTCTAACACCTCCATCAGGGAAAA 1464
||| ||||| ||||||||| || |||||||||||||||| ||||||||||||||||||
Sbjct 1375 AGCTACTGCATTTTACGAGA-AAGAACTGGGTGTGCTTCTGACACCTCCATCAGGGAAAG 1433
Query 1465 ATCAGATGCAGGAGTGGAAAGGGTTACAATCTCACCGGTTACTTCAAATCGAAATCAACG 1524
||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 1434 ATCAGATGCAGGAGTGGAAAGGGTTACAATCTCACCGATTACTCCAGATCGAAATCAACG 1493
Query 1525 ATGCAAAAAGACCGGCTAGTGATGTGGCAATATCAGGGTTAGGATGGATTTCAATTGAAC 1584
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1494 ATGCAAAAAGACCGGCTAGTGATGTGGCGATATCTGGGTTAGGATGGATTTCAATTGAAC 1553
Query 1585 CAATCCGCAAAACACGAGGAACTGAACCGAGAGATCTCAATGAAGCAGAGCATGAGATAC 1644
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1554 CAATCCGCAAAACACGAGGAACTGAACCGCGAGATCTCAATGAAGCAGAGCATGAGATAC 1613
Query 1645 ATATTTGTGTCAGTGTGCCAAAACCAGTTGAAGTTTTTCTTCGACCAACATTGCCAATTG 1704
| |||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 1614 GTCTTTGTGTCAGTGTGCCTAAACCAGTTGAAGTGTTTCTCCGACCAACATTGCCAATTG 1673
Query 1705 GTACTTCAGGTACTGAATGGTATCAGTATCGTGAGTTAACCGATAAGGAAGAAGAAGTAA 1764
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 GTACTTCAGGTACTGAATGGTATCAGTATCGTGAGTTAACCGATAAGGAAGAAGAAGTAC 1733
Query 1765 GACCCAAATGGTACTTTTGAAtttttttttGTTTAGATGCAAAAATATCGGCTTAG-TAT 1823
|||||||||||||||||||||||||| |||||||||||||| |||||||| || | |
Sbjct 1734 GACCCAAATGGTACTTTTGAATTTTT----GTTTAGATGCAAAAGTATCGGCTAAGCT-T 1788
Query 1824 CACAAACCAGAGTTATA-T---GTAA--CAAAATAGTAAATTGTTTGTAATGAAATCTAC 1877
| ||||||||||||||| | |||| |||||||| ||||||||||||||| ||| |||
Sbjct 1789 CTCAAACCAGAGTTATACTAAAGTAATGCAAAATAGAAAATTGTTTGTAATGCAATTTAC 1848
Query 1878 T 1878
|
Sbjct 1849 T 1849
Score = 87.9 bits (47), Expect = 2e-16
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 8 CTCTGTACCAGTTAGAGTCTCTCTTGTTCTCTCTCTGGGTTTAATAGATAACATAACAAC 67
||||||| ||| |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1 CTCTGTATCAGCTAGAGTCTCTCTTGTTCTCTCTCTGGGTTTAATAGA-AG-ATAACAAC 58
Query 68 AAA 70
|||
Sbjct 59 AAA 61
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71800111825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5