BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47480.1
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937488 jgi|Araly1|937488|scaffold_501679.1 902 0.0
> Ahg937488 jgi|Araly1|937488|scaffold_501679.1
Length=595
Score = 902 bits (488), Expect = 0.0
Identities = 547/576 (95%), Gaps = 2/576 (0%)
Strand=Plus/Plus
Query 20 CACACACATAAATTTAGATCAATATGGAGGATTCGTCTCTTCTTAGCCCAATCTCTCTCC 79
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 CACACACATAAATTTAGATCAATATGGAGGATTCGTCTCTTCTTAGCCCAATTTCTCTCC 60
Query 80 TCACCATTGTCATCTTCTTATTCATTCTCAATCTCATGATGATAATTCAAGActtctctt 139
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTACCATTGTCATCTTCTTGTTCATTCTCAATCTCATGATGATAATTCAAGACTTCTCTT 120
Query 140 cttcttttccctttcgtttccatctcttcttctctaatgcctacattctcttcACCTCAA 199
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 CTTCTTTTCCCTATCGTTTCCATCTCTTCTTCTCTAATGCCTACATTCTCTTCGCCTCAA 180
Query 200 TAAGAAACAATAAGCAAAATACCGAGCTCCCAATCATAAAGAAAGTTGTT-GTCCCAAAT 258
|||||||||||| ||||||||||||||||||||| ||||||||| || || || | ||||
Sbjct 181 TAAGAAACAATAGGCAAAATACCGAGCTCCCAATTATAAAGAAA-TTTTTCGTTCTAAAT 239
Query 259 CGAGCAGATATCAAAACGTCCGTGGAAGAAGTCAAGGCGATAATCGATGACTCGGAAGCT 318
||| || |||||||||| |||||||||||| |||||||||| ||||||||||||||||||
Sbjct 240 CGAACAAATATCAAAACATCCGTGGAAGAAATCAAGGCGATGATCGATGACTCGGAAGCT 299
Query 319 TTATACGAATGTTTGATTGAAGAAGGAGAAGAGTACTTGCTTGAGAAGAATGAGATGATG 378
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTATACGAACGTTTGATAGAAGAAGGAGAAGAGTACTTGCTTGAGAAGAATGAGATGATG 359
Query 379 GGTAAGGAGATAGTTAAAGAGGCGTTTAGGTTATTTGATGAGAATCAGGATGGGTTTATA 438
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 360 GGTAAGGAGATAGTTAAAGAGGCGTTTAGATTATTTGATGAGAATCAAGATGGGTTTATA 419
Query 439 GATGAAAATGAGTTAAAACATGTGTTGAGTTTGTTAGGATACGATGAGTGTACAAAGATG 498
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 GATGAAAATGAGTTAAAACATGTGTTGTGTTTGTTAGGATACGATGAGTGTACAAAGATG 479
Query 499 GAGTGTAGGAAGATGGTTAAGGTTTATGATGAGAATAGAGATGGAAAAATTGATTTTTAT 558
||||||||||||||| ||||||||| |||||||||||||||||| ||||| |||||||||
Sbjct 480 GAGTGTAGGAAGATGATTAAGGTTTTTGATGAGAATAGAGATGGGAAAATCGATTTTTAT 539
Query 559 GAGTTTGTGAAGCTTATAGAGAAGAGCTTTTCGTGA 594
|||||||||||||| ||||| |||||||||| ||||
Sbjct 540 GAGTTTGTGAAGCTCATAGATAAGAGCTTTTGGTGA 575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21748685730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5