BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47490.1
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323362 jgi|Araly1|323362|fgenesh1_pm.C_scaffold_5000906 924 0.0
> Ahg323362 jgi|Araly1|323362|fgenesh1_pm.C_scaffold_5000906
Length=678
Score = 924 bits (500), Expect = 0.0
Identities = 644/707 (91%), Gaps = 35/707 (5%)
Strand=Plus/Plus
Query 1 ATGGATTGGCCTACGACGACTCTCATCTCCCGAAGAATCTGTAATCTTTTGATTTTCTTC 60
||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGATTGGCCTACGAC-A--CTCATCTCCAGAAGAATCTGTAATCTTTTGATTTTCTTC 57
Query 61 GTCAAATTAAACCACAAAAACCTCTCCATCGATTCGGATAATCCACAACACTCTGCGATG 120
|||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 58 GTCAAATTAAACCACAAAAACCTCTCCATCGACTCGGATCACCCACAACACTCTGCGATG 117
Query 121 AAACCCGACCCGACCAGACGCAGAAACAGAGCCTTAT---CTTCTTCTTCTCCATCAAAG 177
|||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 118 AAACCCGACCCGGCCAGACGCAGAAACAGAGCCTTATCACCTTCTTCTTCTCCATC-AA- 175
Query 178 ACCCGACCCGAACTATCTTCCGGGTCTCCCAACCGGAATACCGGTGAAGCCCGTGGTGGA 237
| |||||| | | || | || | ||||||||||||| ||||||
Sbjct 176 A---GACCCG----A-C--CC--G----------GG--T-CCGGTGAAGCCCGCGGTGGA 210
Query 238 AAGGTGAAAACTTCGGCCACTTTACTCGACCGGGAGGAGATGGGTCTTTTTCCCGGGTCG 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 AAGGTGAAAACTTCGGCCACTTTACTCGACCGGGAGGAGATGGGTCTTTTTCCCGGGTCT 270
Query 298 GGTTACGGTGACCCGAATCCAGAACCTAGGAGCTTTCCTTATAGTGTGAAGCAGCAATGT 357
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 GGTTACGATGACCCGAATCCAGAACCTAGGAGCTTTCCTTATAGTGTGAAGCAGCAATGT 330
Query 358 TGGGAAAAAGCAGAGAAGATTAAAGGAAGAGATCCTGAGCGTTGGAGGAGAGATCATTTA 417
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 331 TGGGAAAAAGCAGAGAAGATTAAAGGGAGAGATCCTGAGCGTTGGAGGAGAGATCATTTA 390
Query 418 GGGAACATTGTGTTTAGGAAGCTTGTTGGTTGTCCTGGATGCTTGTGTCATGATTATGAT 477
||||||||||||||| | ||||| || |||||||||||||||||||| ||||||||||||
Sbjct 391 GGGAACATTGTGTTTCGAAAGCTCGTAGGTTGTCCTGGATGCTTGTGCCATGATTATGAT 450
Query 478 CACATTGTTCCTTACTCCAAGGGCGGCAAGAGCACTCTGGAAAACTGTCAGGTTTTGCAG 537
||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 451 CACATTGTTCCCTACTCCAAGGGCGGCAAGAGCACTCTGGAAAACTGCCAGGTTCTGCAG 510
Query 538 GCAAAGGTAAACCGATCAAAGGGTAATAAAACCGATATTTCTCGATCCGAGCTTATCCAA 597
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 511 GCAAAGGTAAACCGATCAAAGGGAAATAAAACCGATATTTCTCGAGCCGAGCTTATCCAG 570
Query 598 AGGAGTTCTTACTGTCGAGTCGCTGGCCGAGATATGGATCTGATTGAGCTAACAGCTTAC 657
||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 571 AGGAGTTCTTATTGTCGAGTTGCTGGCCGAGATATGGATCTCATTGAGCTAACAGCGTAC 630
Query 658 GGGAATGTACAGCGTGCACCT-ACGTCTAGCGGATGCAGAATTCAGT 703
|||||||||||||| |||||| | ||| || |||||||| |||||||
Sbjct 631 GGGAATGTACAGCGCGCACCTGA-GTCCAGTGGATGCAGGATTCAGT 676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32976323205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5