BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47500.1
Length=1717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897595 jgi|Araly1|897595|Al_scaffold_0005_1561 1892 0.0
> Ahg897595 jgi|Araly1|897595|Al_scaffold_0005_1561
Length=1350
Score = 1892 bits (1024), Expect = 0.0
Identities = 1253/1361 (92%), Gaps = 25/1361 (2%)
Strand=Plus/Plus
Query 95 ATGATGATGGAGACTAGAGATCCAGCTATTAAGCTTTTCGGTATGAAAATCCCTTTTCCG 154
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1 ATGATGATGGAGAGTAGAGATCCAGCTATTAAGCTCTTCGGTATGAAAATCCCTTTAACG 60
Query 155 TCGGTTTTTGAATCGGCAGTTACGGTGGAGGATGACGAAGAAGATGACTGGAGCGGCGGA 214
|||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GCGGTTTTTGAATCGTCGGTTACGGTGGAGGATGAGGAAGAAGATGACTGGAGCGGCGGA 120
Query 215 GATGACAAATCACCAGAGAAGGTAACTCCAGAGTTATCAGATAAGAACAACAACAACTGT 274
||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||
Sbjct 121 GATGACAAATCACCAGATAAGGTAACTCTAGAGATATCAGATAAGAACAACAAGAACTGT 180
Query 275 AACGACAACAGTTT---TAA--C--A--ATTCGAAACCCGAAACCT-TGGACAAAGAGGA 324
||| |||||||||| || | | ||||||||||||||| || |||| || |||||
Sbjct 181 AACAACAACAGTTTCAACAATTCGAATGATTCGAAACCCGAAA-CTGTGGATAAGGAGGA 239
Query 325 AGCGACATCAACTGATCAGATAGAGAGTAGTGACACGCCTGAGGATAATCAGCAGACGAC 384
||||||||||| |||||||||||||| || || |||||||||||||||||||||||||
Sbjct 240 GGCGACATCAACCGATCAGATAGAGAGCAGCGATTCGCCTGAGGATAATCAGCAGACGAC 299
Query 385 ACCTGATGGTAAAACCCTAAAGAAACCGACTAAGATTCTACCGTGTCCGAGATGCAAAAG 444
| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 300 AGCTGACGGTAAAACCCTGAAGAAACCGACTAAGATCCTACCGTGTCCGAGATGTAAAAG 359
Query 445 CATGGAGACCAAGTTCTGTTATTACAACAACTACAACATAAACCAGCCTCGTCATTTCTG 504
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TATGGATACTAAGTTCTGTTATTACAACAACTACAACATAAACCAGCCTCGTCATTTCTG 419
Query 505 CAAGGCTTGTCAGAGATATTGGACTGCTGGAGGGACTATGAGGAATGTTCCTGTGGGGGC 564
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 CAAGGCTTGTCAGAGATATTGGACTGCTGGAGGGACTATGAGGAATGTTCCCGTGGGGGC 479
Query 565 AGGACGTCGTAAGAACAAAAGCTCATCTTCTCATTACCGTCACATCACTATTTCCGAGGC 624
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 480 AGGACGTCGTAAGAACAAAAGCTCCTCTTCTCATTACCGTCATATCACTATTTCCGAGGC 539
Query 625 TCTTGAGGCTGCGAGGCTTGACCCGGGCTTACAGGCAAACACAAGGGTCTTGAGTTTTGG 684
||| ||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||
Sbjct 540 TCTAGAGGCTGCGAGGCTTGATCCGGGGTTGCAGGCAAACACCCGGGTCTTGAGTTTTGG 599
Query 685 TCTCGAAGCTCAGCAGCAGCACGTTGCTGCTCCCATGACACCTGTGATGAAGCTACAAGA 744
||| |||||||| || ||||||| |||||||||||| |||||||||||||||||| |
Sbjct 600 TCTGGAAGCTCATCAACAGCACG---CTGCTCCCATGAAACCTGTGATGAAGCTACAGGG 656
Query 745 AGATCAAAAGGTCTCAAACGGTGCTAGGAACAGGTTTCACGGGTTAGCGGATCAACGGCT 804
||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| |||||
Sbjct 657 AGATCAAAAGGCCTCAAACGGAGCTAGGAACGGGTTTCACGGGTTAGCGGATCAGCGGCT 716
Query 805 TGTAGCTCGGGTAGAGAATGGAGATGATTGCTCAAGCGGATCCTCTGTGACCACCTCTAA 864
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TGTGGCTCGGGTAGAGAATGGAGATGATTGCTCAAGCGGATCCTCTGTGACCACCTCTAA 776
Query 865 CAATCACTCAGTGGATGAATCAAGAGCACAAAGCGGCAGTGTTGTTGAAGCACAAATGaa 924
|||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 777 CAATCATTCAGTGGATGAATCAAGAGCACAAAGCGGCAGAGTTGTTGACCCACAAATGAA 836
Query 925 caacaacaacaacaaTAACATGAATGGTTATGCTTGCATCCCAGGTGTTCCATGGCCTTA 984
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||
Sbjct 837 CAACAACAACAACAA---CATGAATGGTTATGCTTGCATCCCTGGTGTTCCATGGCCATA 893
Query 985 CACGTGGAATCCAGCGATGCCTCCACCAGGTTTTTACCCGCCTCCAGGGTATCCAATGCC 1044
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 894 CACGTGGAATCCAGCGATGCCTCCACCAGGCTTTTACCCGCCTCCAGGGTATCCAATGCC 953
Query 1045 GTTTTACCCTTACTGGACCATCCCAATGCTACCACCGCATCAATCCTCATCGCCTATAAG 1104
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||
Sbjct 954 GTTTTACCCTTACTGGACCATCCCAATGTTATCACCGCATCAATCCTCATCGCCTATGAG 1013
Query 1105 CCAAAA-GTGTTCAAATACAAACTCTCCGACTCTCGGAAAGCATCCGAGAGATGAAGGAT 1163
|||||| | |||||||| |||||||||| ||||||||||||||| |||||||||||| ||
Sbjct 1014 CCAAAAAG-GTTCAAATCCAAACTCTCCCACTCTCGGAAAGCATTCGAGAGATGAAGAAT 1072
Query 1164 C-ATCGAAAAAGGACAACGAGACAGAGCGAAAACAGAAGGC-CGGGTGCGTTCTGGTCCC 1221
| | |||||||| |||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 1073 CCA-CGAAAAAGAACAACGAGACAGAGCGGAAACAGA-GGAACGGGTGCGTTCTGGTCCC 1130
Query 1222 GAAAACGTTGAGAATAGATGATCCTAACGAAGCAGCAAAGAGCTCGATATGGACAACATT 1281
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1131 AAAAACGTTGAGAATAGACGATCCAAACGAAGCAGCAAAGAGCTCGATATGGACAACATT 1190
Query 1282 GGGAATCAAGAACGA-GGCGATGTGCAAAGCCGGTGGTATGTTCAAAGGGTTTGATCATA 1340
||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| | |
Sbjct 1191 GGGAATCAAGAACGAAGG-GATGTGCAAAGCCGGTGGTATGTTCGAAGGGTTTGATAAGA 1249
Query 1341 AGACAAAGATGTATAACAACGACAAAGCTGAGAACTCCCCTGTTCTTTCTGCTAACCCTG 1400
| || |||||| |||||||||| ||||| || || |||||||||||||||||||||||||
Sbjct 1250 AAACGAAGATGAATAACAACGAAAAAGCCGAAAATTCCCCTGTTCTTTCTGCTAACCCTG 1309
Query 1401 CTGCTCTATCAAGATCACACAATTTCCATGAACAGATTTAG 1441
|||||||||||||||||| ||||||||||||||| || |||
Sbjct 1310 CTGCTCTATCAAGATCACTCAATTTCCATGAACAAATATAG 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64410604295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5