BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G47510.1 Length=595 Score E Sequences producing significant alignments: (Bits) Value Ahg485116 jgi|Araly1|485116|fgenesh2_kg.5__1108__AT3G47510.1 525 1e-148 > Ahg485116 jgi|Araly1|485116|fgenesh2_kg.5__1108__AT3G47510.1 Length=504 Score = 525 bits (284), Expect = 1e-148 Identities = 424/487 (87%), Gaps = 28/487 (6%) Strand=Plus/Plus Query 88 TAGTCAAATGGCTAACAAAGCTCTCATTCATCTCCTCGTCATCTTCTTCTTGGCTCTATC 147 |||||||||||| |||||||||||||| ||||||||||| |||||||||||| | ||||| Sbjct 42 TAGTCAAATGGCCAACAAAGCTCTCATCCATCTCCTCGTGATCTTCTTCTTGTCCCTATC 101 Query 148 ACACATCTTCTTCTTCCCTTCCCATGCTTCGAGACTTGGGAGTTTGATGGAGAAGCCAAA 207 |||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| || Sbjct 102 ACACATCTTCTTCTTCCCTTCCAATGCATCGAGACTTGGGAGTTTGATGGAAAAGCCCAA 161 Query 208 AATTGTTCGACCTCAACAAGATACACTAATGGATGTGAAGAAGGAGGTCGAAGAAAGGAT 267 ||||| || ||||| |||||||||||||||||| | | || | | | |||| || | Sbjct 162 AATTGATCTACCTCCACAAGATACACTAATGGA-G-GTAG-A--A-G--GAAG---GG-T 209 Query 268 GGTGATGGAGTTAAACGACTATCCAGGTTCGGGTGCAAACAATCGCCATTTGCCACGACA 327 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 210 GGTGATGGAGTTAAACGACTATCCAGGTTCGGGTGCCAACAATCGCCACTTGCCACGACA 269 Query 328 ACGAGGCTGCGTCGTTGATTGCTGATCGATATATAAAATGACGAAAAACGAATTAATATG 387 ||||||||||||| | |||||||||| ||||||||| ||| |||||| ||||||||| Sbjct 270 ACGAGGCTGCGTCATCGATTGCTGATAGATATATAATGTGAAGAAAAATTAATTAATATA 329 Query 388 -ATTATAGCTAGTATCGATAAA-TT-GATGTATAAGTAAGATACGTCTAATTATTTTT-C 443 ||||| | ||||||||||| || |||||||||||| | ||| |||||||||| || | Sbjct 330 TATTAT-G---GTATCGATAAAATTTGATGTATAAGTA-GCTACTTCTAATTATTATTAC 384 Query 444 AGAATATGAATTGAGTTAGTTTAACATTGGAGTCTATAGACGATTAGACTATATACTTGT 503 || ||||||||||||||||||||||| |||| | |||||||||||||||||||| Sbjct 385 GGACTATGAATTGAGTTAGTTTAACATCGGAG---A----CGATTAGACTATATACTTGT 437 Query 504 CTACTCTACGGAGAAAAGCATAGTTTTATTTATGTAGTTCAGTTGGTAAATCAATAGATG 563 |||||||| ||||||||||||||||||||||||||||||||||| |||||| | ||||| Sbjct 438 CTACTCTAGGGAGAAAAGCATAGTTTTATTTATGTAGTTCAGTTATTAAATCCAGAGATG 497 Query 564 CTATTGT 570 ||||||| Sbjct 498 CTATTGT 504 Score = 69.4 bits (37), Expect = 3e-11 Identities = 41/43 (95%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 16 AAAAAGAGAGACAAAACTCACAACAACATCAAGGTTTTAACTA 58 ||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 1 AAAAAAAGAAACAAAACTCACAACAACATCAAGGTTTTAACTA 43 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21786841319 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5