BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47510.1
Length=595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485116 jgi|Araly1|485116|fgenesh2_kg.5__1108__AT3G47510.1 525 1e-148
> Ahg485116 jgi|Araly1|485116|fgenesh2_kg.5__1108__AT3G47510.1
Length=504
Score = 525 bits (284), Expect = 1e-148
Identities = 424/487 (87%), Gaps = 28/487 (6%)
Strand=Plus/Plus
Query 88 TAGTCAAATGGCTAACAAAGCTCTCATTCATCTCCTCGTCATCTTCTTCTTGGCTCTATC 147
|||||||||||| |||||||||||||| ||||||||||| |||||||||||| | |||||
Sbjct 42 TAGTCAAATGGCCAACAAAGCTCTCATCCATCTCCTCGTGATCTTCTTCTTGTCCCTATC 101
Query 148 ACACATCTTCTTCTTCCCTTCCCATGCTTCGAGACTTGGGAGTTTGATGGAGAAGCCAAA 207
|||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||
Sbjct 102 ACACATCTTCTTCTTCCCTTCCAATGCATCGAGACTTGGGAGTTTGATGGAAAAGCCCAA 161
Query 208 AATTGTTCGACCTCAACAAGATACACTAATGGATGTGAAGAAGGAGGTCGAAGAAAGGAT 267
||||| || ||||| |||||||||||||||||| | | || | | | |||| || |
Sbjct 162 AATTGATCTACCTCCACAAGATACACTAATGGA-G-GTAG-A--A-G--GAAG---GG-T 209
Query 268 GGTGATGGAGTTAAACGACTATCCAGGTTCGGGTGCAAACAATCGCCATTTGCCACGACA 327
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 210 GGTGATGGAGTTAAACGACTATCCAGGTTCGGGTGCCAACAATCGCCACTTGCCACGACA 269
Query 328 ACGAGGCTGCGTCGTTGATTGCTGATCGATATATAAAATGACGAAAAACGAATTAATATG 387
||||||||||||| | |||||||||| ||||||||| ||| |||||| |||||||||
Sbjct 270 ACGAGGCTGCGTCATCGATTGCTGATAGATATATAATGTGAAGAAAAATTAATTAATATA 329
Query 388 -ATTATAGCTAGTATCGATAAA-TT-GATGTATAAGTAAGATACGTCTAATTATTTTT-C 443
||||| | ||||||||||| || |||||||||||| | ||| |||||||||| || |
Sbjct 330 TATTAT-G---GTATCGATAAAATTTGATGTATAAGTA-GCTACTTCTAATTATTATTAC 384
Query 444 AGAATATGAATTGAGTTAGTTTAACATTGGAGTCTATAGACGATTAGACTATATACTTGT 503
|| ||||||||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct 385 GGACTATGAATTGAGTTAGTTTAACATCGGAG---A----CGATTAGACTATATACTTGT 437
Query 504 CTACTCTACGGAGAAAAGCATAGTTTTATTTATGTAGTTCAGTTGGTAAATCAATAGATG 563
|||||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 438 CTACTCTAGGGAGAAAAGCATAGTTTTATTTATGTAGTTCAGTTATTAAATCCAGAGATG 497
Query 564 CTATTGT 570
|||||||
Sbjct 498 CTATTGT 504
Score = 69.4 bits (37), Expect = 3e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 16 AAAAAGAGAGACAAAACTCACAACAACATCAAGGTTTTAACTA 58
||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAGAAACAAAACTCACAACAACATCAAGGTTTTAACTA 43
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21786841319
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5