BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47520.1
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937492 jgi|Araly1|937492|scaffold_501683.1 1788 0.0
> Ahg937492 jgi|Araly1|937492|scaffold_501683.1
Length=1258
Score = 1788 bits (968), Expect = 0.0
Identities = 1147/1234 (93%), Gaps = 9/1234 (1%)
Strand=Plus/Plus
Query 165 AACAAGAAATGGCAACAGCAACAT---CAGCTTCTCTGTTTTCAACTGTTTCTTCAT-CT 220
||||| ||||||| |||||||| |||| ||||||||||||||||||||||| | |
Sbjct 14 AACAA-AAATGGCTGTAGCAACATCAGCAGCATCTCTGTTTTCAACTGTTTCTTCTTAC- 71
Query 221 TACTCCAAAGCTAGCTCCATACCACATTCAAGACTCCAATCTGTGAAATTCAACTCAGTC 280
| ||| ||| | || ||| |||| ||||||||||||||| |||||||||| |||||| ||
Sbjct 72 TCCTCTAAACCCAGTTCCTTACCTCATTCAAGACTCCAAGCTGTGAAATTTAACTCACTC 131
Query 281 CCTAGCTTCACCGGTCTCAAATCAAC--C-TCTCTCATCTCCGGATCTGATTCCTCTTCC 337
||||||||||||||||||| |||||| | ||||||||||| ||||||||| ||||||||
Sbjct 132 CCTAGCTTCACCGGTCTCAGATCAACAACGTCTCTCATCTCTGGATCTGATGCCTCTTCC 191
Query 338 TTAGCCAAGACTCTACGCGGTTCCGTAACGAAAGCACAAACATCTGACAAGAAGCCTTAC 397
||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 192 TTAACCAAGACTCTACGAGGTTCCGTAACGAAAGCTCAAACATCTGACAAGAAGCCTTAC 251
Query 398 GGATTCAAAATCAACGCTTCATACAAAGTAGCTGTTCTTGGTGCTGCTGGTGGTATAGGT 457
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 GGATTCAAAATCAATGCTTCATACAAAGTAGCTGTTCTTGGTGCTGCTGGTGGTATAGGT 311
Query 458 CAGCCTTTATCACTTCTCATCAAGATGTCTCCGTTAGTCTCTACGCTTCATCTTTACGAT 517
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 312 CAGCCTTTATCACTTCTCATCAAGATGTCTCCGTTAGTTTCGACGCTTCATCTTTACGAT 371
Query 518 ATCGCCAATGTTAAAGGAGTTGCTGCTGATCTAAGTCATTGTAACACTCCTTCTCAAGTT 577
|| || |||||||||||||||||||||||| | ||||||||||| |||||||||||||||
Sbjct 372 ATTGCGAATGTTAAAGGAGTTGCTGCTGATTTGAGTCATTGTAATACTCCTTCTCAAGTT 431
Query 578 CGTGATTTCACTGGTCCTTCTGAGTTAGCTGATTGTTTGAAAGATGTTAACGTTGTTGTC 637
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 432 CGTGATTTCACCGGTCCTTCTGAGTTAGCTGATTGTTTGAAAGATGTTAATGTTGTTGTT 491
Query 638 ATCCCTGCTGGTGTGCCGAGGAAACCCGGTATGACTCGTGACGATCTTTTCAACATCAAT 697
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 492 ATCCCTGCTGGTGTACCGAGGAAACCGGGTATGACTCGTGATGATCTTTTCAACATCAAT 551
Query 698 GCCAATATTGTCAAGACTCTTGTTGAAGCTGTTGCTGAGAATTGCCCTAATGCTTTCATT 757
||||| ||||| |||| ||||||||||||||||||||| || || ||||||||||| |||
Sbjct 552 GCCAACATTGTGAAGAATCTTGTTGAAGCTGTTGCTGATAACTGTCCTAATGCTTTTATT 611
Query 758 CATATTATTAGTAACCCGGTTAACTCTACGGTACCTATTGCTGCTGAAGTGTTGAAGAAG 817
|| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 612 CACATTATTAGTAACCCGGTTAACTCTACCGTACCGATTGCTGCTGAAGTGTTGAAAAAG 671
Query 818 AAAGGTGTTTATGATCCTAAGAAGCTGTTTGGTGTCACTACTTTGGATGTTGTGAGGGCT 877
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 672 AAAGGTGTTTATGATCCTAAGAAGTTGTTTGGTGTCACTACGTTGGATGTTGTGAGGGCT 731
Query 878 AACACTTTTGTTTCTCAGAAGAAGAATCTTAAGCTTATTGATGTTGATGTTCCGGTTATT 937
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 732 AACACTTTTGTTTCTCAGAAAAAGAACCTTAAGCTTATTGATGTGGATGTTCCGGTTATT 791
Query 938 GGTGGACATGCTGGAATCACCATTTTGCCTCTCCTCTCGAAGACAAAACCGTCTGTTAAC 997
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 792 GGTGGACATGCTGGAATCACCATTTTGCCTCTTCTCTCGAAAACAAAACCGTCTGTCAAC 851
Query 998 TTTACTGATGAAGAGATCCAAGAGCTCACTGTTAGGATTCAGAACGCTGGTACTGAGGTT 1057
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 852 TTTACCGATGAAGAGATCCAAGAGCTCACTGTTAGGATTCAGAACGCTGGAACTGAGGTT 911
Query 1058 GTTGATGCTAAGGCAGGTGCAGGTTCAGCTACTTTGTCAATGGCTTATGCTGCTGCTAGA 1117
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 912 GTGGATGCTAAGGCAGGTGCAGGTTCAGCTACTTTGTCAATGGCATATGCTGCAGCAAGA 971
Query 1118 TTTGTAGAGTCATCTCTTCGTGCTCTTGATGGAGACGGAGATGTCTACGAGTGCTCGTTT 1177
||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 972 TTTGTCGAGTCATCTCTCCGTGCTCTTGATGGAGACGGAGATGTCTATGAGTGCTCATTT 1031
Query 1178 GTGGAGTCGACTCTGACTGATCTTCCTTTCTTTGCATCACGGGTTAAGATAGGGAAGAAC 1237
|||||||||||||||||||||||||||||||||||||| ||| | ||| | |||||||||
Sbjct 1032 GTGGAGTCGACTCTGACTGATCTTCCTTTCTTTGCATCGCGGATCAAGCTTGGGAAGAAC 1091
Query 1238 GGTCTTGAAGCTGTGATTGAGTCAGACCTTCAGGGATTGACTGAGTATGAGCAGAAAGCA 1297
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1092 GGTCTTGAAGCTGTGATTGAGTCAGACCTTCAGGGGTTAACTGAGTATGAGCAGAAAGCA 1151
Query 1298 CTAGAAGCTCTTAAGGTAGAATTGAAAGCTAGCATTGACAAGGGTGTCGCATTTGCAAAC 1357
|||||||||||||| |||| ||||||||||||| || |||||||||||||||||||||
Sbjct 1152 CTAGAAGCTCTTAAACCAGAACTGAAAGCTAGCATCGAGAAGGGTGTCGCATTTGCAAAC 1211
Query 1358 AAACCAGCTGCTGCAGCAGCTAACTAGATCGCAA 1391
||||||||||||||||||||||||||||| ||||
Sbjct 1212 AAACCAGCTGCTGCAGCAGCTAACTAGATTGCAA 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58316165095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5