BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47530.1
Length=1811
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485117 jgi|Araly1|485117|fgenesh2_kg.5__1109__AT3G47530.1 2953 0.0
> Ahg485117 jgi|Araly1|485117|fgenesh2_kg.5__1109__AT3G47530.1
Length=1809
Score = 2953 bits (1599), Expect = 0.0
Identities = 1743/1813 (96%), Gaps = 8/1813 (0%)
Strand=Plus/Plus
Query 3 AAGACTATGTTGAAGTCCATAAGCAGCAGCAGCGGCGACGATCATCTTCTTTCTCTGATC 62
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1 AAGACTATGTTGAAGTCCATAAGCAGCAGCAGCAGCGACGATCACCTTCTTTCTCTGATC 60
Query 63 GTATCTTCCACCGGAAAACTCCATCTCCGGCAGATTCACGCCCTCTTACTCCGCACTTCC 122
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 GTATCTTCCACCGGAAAACTCCATCTCCGGCAGATTCACGCCGTCTTACTCCGCACTTCC 120
Query 123 TTAATCAGAAACTCTGACGTTTTCCACCATTTCctctctcgtctcgctctctctctGATT 182
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TTAATCAGAAACTCCGACGTTTTCCACCATTTCCTCTCTCGTCTCGCTCTCTCTCTCATT 180
Query 183 CCTCGAGACATCAATTACTCATGCCGAGTTTTCTCCCAGAGATTGAACCCAACTCTCTCT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTCGAGACATCAATTACTCATGCCGAGTTTTCTCCCAGAGATTGAACCCAACTCTCTCT 240
Query 243 CACTGCAACACCATGATCAGAGCTTTCTCTCTCAGCCAAACTCCATGCGAAGGGTTTCGC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CACTGCAACACCATGATCAGAGCTTTCTCTCTCAGCCAAACTCCATGCGAAGGGTTTCGC 300
Query 303 TTGTTTCGAT-CTCTTCGACGAAACAGCTCTCTTCCTGCTAATCCGCTCTCGTCTTCTTT 361
|||||||| | ||||| ||||||||| |||| ||||||||||||| ||||||||||||||
Sbjct 301 TTGTTTCG-TGCTCTTAGACGAAACATCTCTTTTCCTGCTAATCCACTCTCGTCTTCTTT 359
Query 362 TGCTCTCAAGTGTTGTATCAAATCAGGTGACTTACTCGGTGGTTTGCAGATTCACGGCAA 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 TGCTCTCAAGTGTTGTATCAAATCAGGTGACTTACTCGGTGGTTTGCAGATTCACGGGAA 419
Query 422 GATTTTCAGTGATGGGTTTCTCTCGGATAGTCTTCTTATGACGACTCTGATGGATCTTTA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GATTTTCAGTGATGGGTTTCTCTCGGATAGTCTTCTTATGACGACTCTGATGGATCTTTA 479
Query 482 CTCCACTTGCGAAAACAGTACTGATGCATGTAAAGTGTTCGACGAAATT-CCCAAGAGAG 540
||| ||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 480 CTCAACTTGTGATAACAGTACTGATGCATGTAAAGTGTTCGACGAAATTCCCCAA-AGAG 538
Query 541 ATACTGTTTCTTGGAATGTGCTGTTTTCGTGTTATCTGCGGAATAAACGTACGAGAGATG 600
|||||||||| ||||| ||| || ||||||||||||| ||||| ||||||||||||||||
Sbjct 539 ATACTGTTTCGTGGAACGTGTTGATTTCGTGTTATCTCCGGAACAAACGTACGAGAGATG 598
Query 601 TTTTAGTTTTGTTTGATAAGATGAAGAACGATGTCGATGGTTGTGTAAAACCAGATGGTG 660
|||| ||||||||||||||||||||||||||||||||||| ||||||| |||||| ||
Sbjct 599 TTTTGGTTTTGTTTGATAAGATGAAGAACGATGTCGATGGGTGTGTAAGACCAGACAATG 658
Query 661 TAACATGTTTGTTAGCTTTACAAGCTTGTGCTAACTTGGGGGCGTTGGATTTTGGTAAAC 720
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 659 TAACATGCTTGTTAGCTTTACAAGCTTGCGCTAACTTGGGGGCGTTGGATTTTGGTAAAC 718
Query 721 AAGTTCATGACTTTATCGATGAAAATGGACTCAGTGGTGCTTTGAATTTGAGTAACACTC 780
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 719 AAGTTCATGACTTTATCGATGAAAACGGACTCAGTGGTGCTTTGAATTTGAGTAACACTT 778
Query 781 TGGTTTCAATGTACTCACGTTGCGGGTCTATGGATAAGGCTTACCAAGTATTTT-ATGGA 839
||||||||||||||||||||||||||||||||||||| |||||| |||| |||| || ||
Sbjct 779 TGGTTTCAATGTACTCACGTTGCGGGTCTATGGATAAAGCTTACGAAGT-TTTTAATCGA 837
Query 840 ATGCGTGAAAGAAACGTAGTCTCGTGGACGGCTCTGATCTCGGGTTTAGCTATGAATGGG 899
|||| |||||||||||| ||||| ||||||||| |||||||||||||||| |||||||||
Sbjct 838 ATGCATGAAAGAAACGTTGTCTCATGGACGGCTATGATCTCGGGTTTAGCCATGAATGGG 897
Query 900 TTTGGAAAAGAAGCCATTGAAGCTTTCAACGAAATGTTGAAGTTTGGAATCTCTCCAGAG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TTTGGAAAAGAAGCCATTGAAGCTTTCAACGAAATGTTGAAGTTTGGAATCTCTCCAGAG 957
Query 960 GAACAGACACTCACTGGTTTATTGTCTGCCTGTAGCCATTCCGGGCTGGTCGCTGAAGGA 1019
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 958 GAACAGACACTCACGGGTTTATTGTCTGCCTGTAGCCATTCCGGGCTGGTCGATGAAGGA 1017
Query 1020 ATGATGTTTTTCGATAGAATGAGGAGTGGTGAATTTAAGATAAAGCCAAATTTACATCAC 1079
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1018 ATGATATTTTTCGATAGAATGAGGAGCGGTGAATTTAAGATAAAGCCAAATTTACATCAC 1077
Query 1080 TATGGCTGCGTTGTTGACCTCTTGGGACGTGCTCGTCTACTTGATAAAGCTTACAGTCTC 1139
||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1078 TATGGCTGCATCGTTGACCTCTTGGGACGTGCTCGACTACTTGATAAAGCTTACAGTCTC 1137
Query 1140 ATTAAGTCAATGGAGATGAAACCGGACTCAACCATTTGGCGTACGCTTCTCGGGGCTTGT 1199
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1138 ATTAAGTCAATGGAGATGAAACCGGACTCCACCATTTGGCGTACGCTGCTCGGGGCTTGT 1197
Query 1200 AGAGTCCATGGAGATGTGGAACTTGGGGAACGTGTGATCTCTCATCTCATCGAACTCAAA 1259
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1198 AGAGTCCATGGAAATGTGGAACTTGGGGAACGTGTGATCTCTCATCTTATCGAACTCAAA 1257
Query 1260 GCCGAAGAAGCTGGAGATTACGTTCTGTTACTCAACACATACTCCA-CGGTTGGGAAATG 1318
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1258 GCCGAAGAAGCTGGAGATTACGTTCTGTTACTCAACACATACT-CATCGGTTGGGAAATG 1316
Query 1319 GGAGAAAGTGACTGAATTGCGTTCTTTAATGAAGGAGAAAAGAATCCATACTAAACCTGG 1378
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 1317 GGAGAAAGTAACTGAATTGCGTTCTTTAATGAAGGAGAAAAGAATCCAGACCAAACCCGG 1376
Query 1379 ATGCAGCGCGATCGAGCTACAAGGAACCGTTCATGAGTTTATAGTAGACGATGTTTCGCA 1438
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 ATGCAGCGCAATCGAGCTACAAGGAACCGTTCATGAGTTTATAGTAGACGATGTTTCGCA 1436
Query 1439 TCCGCGGAAGGAAGAAATCTATAAAATGCTGGCGGAAATCAATCAGCAGCTGAAGATTGC 1498
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TCCGCGGAAGGAAGAAATCTACAAAATGCTGGCGGAAATCAATCAGCAGCTGAAGATTGC 1496
Query 1499 GGGGTATGTGGCGGAAATTACATCGGAACTGCACAATCTTGAGTCAGAAGAAGAAAAGGG 1558
||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1497 GGGTTATGTGGCGGAAATCACATCGGAACTGCACAATCTTGATTCAGAAGAAGAAAAGGG 1556
Query 1559 ATACGCGTTAAGATACCATAGCGAGAAGCTAGCTATAGCCTTTGGGATTCTGGTGACTCC 1618
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 ATACGCGTTGAGATACCATAGCGAGAAGCTAGCTATAGCCTTTGGGATTCTGGTGACTCC 1616
Query 1619 ACCAGGAACAACCATTAGAGTGACCAAGAATCTCAGAACTTGTGTTGATTGTCATAATTT 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 ACCAGGAACAACCATTAGAGTGACCAAGAATCTCAGAACTTGTGTTGATTGTCATAATTT 1676
Query 1679 TGCAAAGTTTGTATCTGATGTTTATGATCGTATCGTGATCGTTAGAGACCGTTCCAGATT 1738
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||
Sbjct 1677 TGCAAAGTTTGTATCTGATGTTTATGATCGTGTCGTGATTGTTAGAGACCGTTCCCGATT 1736
Query 1739 TCATCATTTTAAAGGCGGCTCTTGCTCTTGTAATGACTTTTGGTGATGATTCAAGCTGAT 1798
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1737 TCATCATTTTAAAGGCGGCTCTTGCTCTTGTAATGACTTTTGGTGATAATTCAAGCTGAT 1796
Query 1799 AACATTTTTCTTC 1811
|||||||||||||
Sbjct 1797 AACATTTTTCTTC 1809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67991087325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5