BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47540.2
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485118 jgi|Araly1|485118|fgenesh2_kg.5__1110__AT3G47540.1 952 0.0
Ahg483470 jgi|Araly1|483470|fgenesh2_kg.4__2530__AT2G43590.1 320 1e-86
Ahg935267 jgi|Araly1|935267|scaffold_403255.1 246 2e-64
Ahg483469 jgi|Araly1|483469|fgenesh2_kg.4__2529__AT2G43580.1 246 2e-64
> Ahg485118 jgi|Araly1|485118|fgenesh2_kg.5__1110__AT3G47540.1
Length=785
Score = 952 bits (515), Expect = 0.0
Identities = 601/642 (94%), Gaps = 7/642 (1%)
Strand=Plus/Plus
Query 1 CACAAACAACATAACATGGCTTCCACCAAAATT-TCCTTAGTCTTTTTCCTTTGCCTCGT 59
||||||||||| |||||||||| ||| |||||| | || |||| |||||||||||||| |
Sbjct 1 CACAAACAACAAAACATGGCTTTCACAAAAATTGT-CTCAGTCATTTTCCTTTGCCTCTT 59
Query 60 AGGTCCTTGTATAGGCGCTGGAACCACAAGCGCTGCCGAATCAGTCAGTAGCATTGTGAC 119
||||||||||||||| | ||||||||| ||| ||| | |||||||||||||||||||||
Sbjct 60 AGGTCCTTGTATAGGTGTTGGAACCACTAGCTCTGGTGGATCAGTCAGTAGCATTGTGAC 119
Query 120 ACAAGGTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCACGAGAAAAAGATT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACAAGGTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCACGAGAAAAAGATT 179
Query 180 CA-ACACCCGCGACTCTTTCATTGACGCTGCTAATAATTTTCCAAACTTTGCAAGTTCCG 238
| ||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||
Sbjct 180 -ATACACCCGCGACTCTTTCATTGACGCTGCTAATAGTTTTCCCAACTTTGCTAGTTCCG 238
Query 239 TTACAAGACGTGAAATTGCAAGCATGTTTGCTCATGTCACTCACGAGACCGGACACTTCT 298
|||| |||||||||||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct 239 TTACTAGACGTGAAATTGCTACCATGTTTGCTCATGTCACTCACGAGACCGGCCACTTCT 298
Query 299 GCTACATAGAAGAAATAAAGAAAAGGTCACGTGGTAGGTGCGACGAGAACGTAGAGCAGA 358
||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| |
Sbjct 299 GCTACATAGAAGAAACAAAGAAAAAGTCACGTGGCAGGTGCGACGAGAACGTAGAGCAAA 358
Query 359 GACCATGTCCATCACAGAGTAAAGGTCACTCCGGTCGTGGTCATCAGAGTCTCGGTCTCG 418
||||||||||||| | ||| ||||||||||||||||||||||| ||| ||||||||||
Sbjct 359 GACCATGTCCATCGCCGAGAAAAGGTCACTCCGGTCGTGGTCA---GAGCCTCGGTCTCG 415
Query 419 ACCTTCTACGCCAGCCTGAGCTTGTGGGTAGCAACCCAACTGTAGCTTTCAGGAAGGGTT 478
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 416 ACCTTCTAAGCCAGCCTGAGCTTGTGGGTAGCAACCCAACTGTAGCTTTCACGAAGGGTT 475
Query 479 TGTCGTTTTGGATTAATAGCGTAAGGCCGGTGCTGAACCAAGGATTTGGAGCCACTATAA 538
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 476 TGTCGTTTTGGATTAATAGCGTAAGGCCGGTACTGAACCAAGGATTTGGAGCCACTATAA 535
Query 539 GAGCCATCAATGGGATGGAATGTAACGGTGGGAATTCAGGTGCGGTCAAGGCAAGGATTG 598
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 536 GAGCCATCAATGGGATGGAATGTAACGGTGGGAATTCAGGTGCTGTCAACGCAAGGATTG 595
Query 599 GGTACTATAGAGACTATTGTAGACAGCTTGGTGTGGATCCTG 640
||||||||||||||||||||||||| ||||||||||||||||
Sbjct 596 GGTACTATAGAGACTATTGTAGACAACTTGGTGTGGATCCTG 637
> Ahg483470 jgi|Araly1|483470|fgenesh2_kg.4__2530__AT2G43590.1
Length=1031
Score = 320 bits (173), Expect = 1e-86
Identities = 217/239 (91%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 402 TCAGAGTCTCGGTCTCGACCTTCTACGCCAGCCTGAGCTTGTGGGTAGCAACCCAACTGT 461
||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 555 TCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTCGGTAGCAACCCAACTGT 614
Query 462 AGCTTTCAGGAAGGGTTTGTCGTTTTGGATTAATAGCGTAAGGCCGGTGCTGAACCAAGG 521
||||||||||| |||||||| ||||||||| || | |||||||||||| |||||||||||
Sbjct 615 AGCTTTCAGGACGGGTTTGTGGTTTTGGATGAACACCGTAAGGCCGGTTCTGAACCAAGG 674
Query 522 ATTTGGAGCCACTATAAGAGCCATCAATGGGATGGAATGTAACGGTGGGAATTCAGGTGC 581
||||||||||| || |||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 675 GTTTGGAGCCACCATTAGAGCCATCAATGGAATGGAATGTAACGGTGGTAATTCCGGTGC 734
Query 582 GGTCAAGGCAAGGATTGGGTACTATAGAGACTATTGTAGACAGCTTGGTGTGGATCCTG 640
||||| ||||||||||| |||||||||||||||||| |||||||||||||||| ||||
Sbjct 735 AGTCAACGCAAGGATTGGATACTATAGAGACTATTGTGGACAGCTTGGTGTGGACCCTG 793
Score = 274 bits (148), Expect = 9e-73
Identities = 224/259 (86%), Gaps = 11/259 (4%)
Strand=Plus/Plus
Query 60 AGGTCCTTGTATAGGC-GCTGGAACCACAAGCG-CTGCCGAATCAGTCAGTAGCATTGTG 117
||||||||||| |||| | ||||||| | || ||| | ||| ||| |||||||||||
Sbjct 180 AGGTCCTTGTAGAGGCAG-TGGAACC-C---CGACTGGTGGATCGGTCGGTAGCATTGTG 234
Query 118 ACACAAGGTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCAC-GAGAAAAAG 176
||||||||||||||||||||||| ||||||||||| |||||||| ||| | | ||||| |
Sbjct 235 ACACAAGGTTTCTTTAACAACATCATCAACCAAGCTGGTAATGGTTGCGCCGGGAAAA-G 293
Query 177 ATTCAACACCCGCGACTCTTTCATTGACGCTGCTAATAATTTTCCAAACTTTGC-AAGTT 235
|||| ||||||| ||||||||| || |||| ||||||| ||| || |||||||| || ||
Sbjct 294 ATTCTACACCCGTGACTCTTTCGTTAACGCCGCTAATACTTTCCCCAACTTTGCCAA-TT 352
Query 236 CCGTTACAAGACGTGAAATTGCAAGCATGTTTGCTCATGTCACTCACGAGACCGGACACT 295
||||||| |||||||||||||| | ||||||||||||| ||||||||||||||||||| |
Sbjct 353 CCGTTACCAGACGTGAAATTGCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATT 412
Query 296 TCTGCTACATAGAAGAAAT 314
|||||||||||||||||||
Sbjct 413 TCTGCTACATAGAAGAAAT 431
> Ahg935267 jgi|Araly1|935267|scaffold_403255.1
Length=720
Score = 246 bits (133), Expect = 2e-64
Identities = 194/224 (87%), Gaps = 2/224 (1%)
Strand=Plus/Plus
Query 402 TCAGAGTCTCGGTCTCGACCTTCTACGCCAGCCTGAGCTTGTGGGTAGCAACCCAACTGT 461
||||||||||||||||||||||||||||||||| || || || |||||||| |||||||
Sbjct 498 TCAGAGTCTCGGTCTCGACCTTCTACGCCAGCCGGAACTAGTTAGTAGCAACTCAACTGT 557
Query 462 AGCTTTC-AGGAAGGGTTTGTCGTTTTGGATTAATAGCGTAAGGCCGGTGCTGAACCAAG 520
|||||| || | ||| |||| ||||||||| ||||||||||||||||| |||||| |||
Sbjct 558 GGCTTTCCAG-ACGGGGTTGTGGTTTTGGATGAATAGCGTAAGGCCGGTACTGAACAAAG 616
Query 521 GATTTGGAGCCACTATAAGAGCCATCAATGGGATGGAATGTAACGGTGGGAATTCAGGTG 580
||||||||||||| || ||||||||||||| ||||| ||||| |||||||||| ||||
Sbjct 617 GATTTGGAGCCACCATTAGAGCCATCAATGCTATGGAGTGTAATGGTGGGAATTTGGGTG 676
Query 581 CGGTCAAGGCAAGGATTGGGTACTATAGAGACTATTGTAGACAG 624
||||||| |||||| || ||||||| | ||||||||| | ||||
Sbjct 677 CGGTCAATGCAAGGGTTAGGTACTACACAGACTATTGCACACAG 720
> Ahg483469 jgi|Araly1|483469|fgenesh2_kg.4__2529__AT2G43580.1
Length=863
Score = 246 bits (133), Expect = 2e-64
Identities = 241/293 (82%), Gaps = 8/293 (3%)
Strand=Plus/Plus
Query 60 AGGTCCTTGTATAGGCGCTGGAACCACAAGCGCTGCCGAATCAGTCAGTAGCATTGTGAC 119
||||||||||| || || |||| || ||| || ||| | | || |||||||||||||
Sbjct 170 AGGTCCTTGTAGAGTCGGTGGACCCCCAACCGGTGCTGGTTTGGTTGGTAGCATTGTGAC 229
Query 120 ACAAGGTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCACGAG-AAAAAGAT 178
|||| |||||||||||||||||||||||||||||||||||||||| | || ||||| ||
Sbjct 230 ACAAAATTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCGC-AGGAAAAATAT 288
Query 179 TCAACACCCGCGACTCTTTCATTGACGCTGCTAATAATTTTCCAAACTTTGC-AAGTTCC 237
| ||||||||||||||||||| |||| | |||| ||| || | |||||| || | ||
Sbjct 289 TTTACACCCGCGACTCTTTCATAAACGCCACCAATACTTTCCCCAGCTTTGCTAA-TACC 347
Query 238 GTTACAAGACGTGAAATTGCAAGCATGTTTGCTCATGTCACTCACGAGACCGGACACTTC 297
|| || || ||||||||||| | ||||||||||||| ||||| ||||||| |||||||||
Sbjct 348 GTCACTAGGCGTGAAATTGCTACCATGTTTGCTCATTTCACTTACGAGACAGGACACTTC 407
Query 298 TGCTACATAGAAGAAATAAA-GAAAAGGTCACGTGGT-AGGTGCGACGAGAAC 348
|||||||||||||| ||||| | | | ||||||| | | ||||||| |||||
Sbjct 408 TGCTACATAGAAGAGATAAACGGAGCG-TCACGTG-TCATGTGCGACCAGAAC 458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38084794083
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5