BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G47540.2 Length=1024 Score E Sequences producing significant alignments: (Bits) Value Ahg485118 jgi|Araly1|485118|fgenesh2_kg.5__1110__AT3G47540.1 952 0.0 Ahg483470 jgi|Araly1|483470|fgenesh2_kg.4__2530__AT2G43590.1 320 1e-86 Ahg935267 jgi|Araly1|935267|scaffold_403255.1 246 2e-64 Ahg483469 jgi|Araly1|483469|fgenesh2_kg.4__2529__AT2G43580.1 246 2e-64 > Ahg485118 jgi|Araly1|485118|fgenesh2_kg.5__1110__AT3G47540.1 Length=785 Score = 952 bits (515), Expect = 0.0 Identities = 601/642 (94%), Gaps = 7/642 (1%) Strand=Plus/Plus Query 1 CACAAACAACATAACATGGCTTCCACCAAAATT-TCCTTAGTCTTTTTCCTTTGCCTCGT 59 ||||||||||| |||||||||| ||| |||||| | || |||| |||||||||||||| | Sbjct 1 CACAAACAACAAAACATGGCTTTCACAAAAATTGT-CTCAGTCATTTTCCTTTGCCTCTT 59 Query 60 AGGTCCTTGTATAGGCGCTGGAACCACAAGCGCTGCCGAATCAGTCAGTAGCATTGTGAC 119 ||||||||||||||| | ||||||||| ||| ||| | ||||||||||||||||||||| Sbjct 60 AGGTCCTTGTATAGGTGTTGGAACCACTAGCTCTGGTGGATCAGTCAGTAGCATTGTGAC 119 Query 120 ACAAGGTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCACGAGAAAAAGATT 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 ACAAGGTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCACGAGAAAAAGATT 179 Query 180 CA-ACACCCGCGACTCTTTCATTGACGCTGCTAATAATTTTCCAAACTTTGCAAGTTCCG 238 | ||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| Sbjct 180 -ATACACCCGCGACTCTTTCATTGACGCTGCTAATAGTTTTCCCAACTTTGCTAGTTCCG 238 Query 239 TTACAAGACGTGAAATTGCAAGCATGTTTGCTCATGTCACTCACGAGACCGGACACTTCT 298 |||| |||||||||||||| | |||||||||||||||||||||||||||||| ||||||| Sbjct 239 TTACTAGACGTGAAATTGCTACCATGTTTGCTCATGTCACTCACGAGACCGGCCACTTCT 298 Query 299 GCTACATAGAAGAAATAAAGAAAAGGTCACGTGGTAGGTGCGACGAGAACGTAGAGCAGA 358 ||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| | Sbjct 299 GCTACATAGAAGAAACAAAGAAAAAGTCACGTGGCAGGTGCGACGAGAACGTAGAGCAAA 358 Query 359 GACCATGTCCATCACAGAGTAAAGGTCACTCCGGTCGTGGTCATCAGAGTCTCGGTCTCG 418 ||||||||||||| | ||| ||||||||||||||||||||||| ||| |||||||||| Sbjct 359 GACCATGTCCATCGCCGAGAAAAGGTCACTCCGGTCGTGGTCA---GAGCCTCGGTCTCG 415 Query 419 ACCTTCTACGCCAGCCTGAGCTTGTGGGTAGCAACCCAACTGTAGCTTTCAGGAAGGGTT 478 |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 416 ACCTTCTAAGCCAGCCTGAGCTTGTGGGTAGCAACCCAACTGTAGCTTTCACGAAGGGTT 475 Query 479 TGTCGTTTTGGATTAATAGCGTAAGGCCGGTGCTGAACCAAGGATTTGGAGCCACTATAA 538 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 476 TGTCGTTTTGGATTAATAGCGTAAGGCCGGTACTGAACCAAGGATTTGGAGCCACTATAA 535 Query 539 GAGCCATCAATGGGATGGAATGTAACGGTGGGAATTCAGGTGCGGTCAAGGCAAGGATTG 598 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 536 GAGCCATCAATGGGATGGAATGTAACGGTGGGAATTCAGGTGCTGTCAACGCAAGGATTG 595 Query 599 GGTACTATAGAGACTATTGTAGACAGCTTGGTGTGGATCCTG 640 ||||||||||||||||||||||||| |||||||||||||||| Sbjct 596 GGTACTATAGAGACTATTGTAGACAACTTGGTGTGGATCCTG 637 > Ahg483470 jgi|Araly1|483470|fgenesh2_kg.4__2530__AT2G43590.1 Length=1031 Score = 320 bits (173), Expect = 1e-86 Identities = 217/239 (91%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 402 TCAGAGTCTCGGTCTCGACCTTCTACGCCAGCCTGAGCTTGTGGGTAGCAACCCAACTGT 461 ||| ||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| Sbjct 555 TCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTCGGTAGCAACCCAACTGT 614 Query 462 AGCTTTCAGGAAGGGTTTGTCGTTTTGGATTAATAGCGTAAGGCCGGTGCTGAACCAAGG 521 ||||||||||| |||||||| ||||||||| || | |||||||||||| ||||||||||| Sbjct 615 AGCTTTCAGGACGGGTTTGTGGTTTTGGATGAACACCGTAAGGCCGGTTCTGAACCAAGG 674 Query 522 ATTTGGAGCCACTATAAGAGCCATCAATGGGATGGAATGTAACGGTGGGAATTCAGGTGC 581 ||||||||||| || |||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct 675 GTTTGGAGCCACCATTAGAGCCATCAATGGAATGGAATGTAACGGTGGTAATTCCGGTGC 734 Query 582 GGTCAAGGCAAGGATTGGGTACTATAGAGACTATTGTAGACAGCTTGGTGTGGATCCTG 640 ||||| ||||||||||| |||||||||||||||||| |||||||||||||||| |||| Sbjct 735 AGTCAACGCAAGGATTGGATACTATAGAGACTATTGTGGACAGCTTGGTGTGGACCCTG 793 Score = 274 bits (148), Expect = 9e-73 Identities = 224/259 (86%), Gaps = 11/259 (4%) Strand=Plus/Plus Query 60 AGGTCCTTGTATAGGC-GCTGGAACCACAAGCG-CTGCCGAATCAGTCAGTAGCATTGTG 117 ||||||||||| |||| | ||||||| | || ||| | ||| ||| ||||||||||| Sbjct 180 AGGTCCTTGTAGAGGCAG-TGGAACC-C---CGACTGGTGGATCGGTCGGTAGCATTGTG 234 Query 118 ACACAAGGTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCAC-GAGAAAAAG 176 ||||||||||||||||||||||| ||||||||||| |||||||| ||| | | ||||| | Sbjct 235 ACACAAGGTTTCTTTAACAACATCATCAACCAAGCTGGTAATGGTTGCGCCGGGAAAA-G 293 Query 177 ATTCAACACCCGCGACTCTTTCATTGACGCTGCTAATAATTTTCCAAACTTTGC-AAGTT 235 |||| ||||||| ||||||||| || |||| ||||||| ||| || |||||||| || || Sbjct 294 ATTCTACACCCGTGACTCTTTCGTTAACGCCGCTAATACTTTCCCCAACTTTGCCAA-TT 352 Query 236 CCGTTACAAGACGTGAAATTGCAAGCATGTTTGCTCATGTCACTCACGAGACCGGACACT 295 ||||||| |||||||||||||| | ||||||||||||| ||||||||||||||||||| | Sbjct 353 CCGTTACCAGACGTGAAATTGCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATT 412 Query 296 TCTGCTACATAGAAGAAAT 314 ||||||||||||||||||| Sbjct 413 TCTGCTACATAGAAGAAAT 431 > Ahg935267 jgi|Araly1|935267|scaffold_403255.1 Length=720 Score = 246 bits (133), Expect = 2e-64 Identities = 194/224 (87%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 402 TCAGAGTCTCGGTCTCGACCTTCTACGCCAGCCTGAGCTTGTGGGTAGCAACCCAACTGT 461 ||||||||||||||||||||||||||||||||| || || || |||||||| ||||||| Sbjct 498 TCAGAGTCTCGGTCTCGACCTTCTACGCCAGCCGGAACTAGTTAGTAGCAACTCAACTGT 557 Query 462 AGCTTTC-AGGAAGGGTTTGTCGTTTTGGATTAATAGCGTAAGGCCGGTGCTGAACCAAG 520 |||||| || | ||| |||| ||||||||| ||||||||||||||||| |||||| ||| Sbjct 558 GGCTTTCCAG-ACGGGGTTGTGGTTTTGGATGAATAGCGTAAGGCCGGTACTGAACAAAG 616 Query 521 GATTTGGAGCCACTATAAGAGCCATCAATGGGATGGAATGTAACGGTGGGAATTCAGGTG 580 ||||||||||||| || ||||||||||||| ||||| ||||| |||||||||| |||| Sbjct 617 GATTTGGAGCCACCATTAGAGCCATCAATGCTATGGAGTGTAATGGTGGGAATTTGGGTG 676 Query 581 CGGTCAAGGCAAGGATTGGGTACTATAGAGACTATTGTAGACAG 624 ||||||| |||||| || ||||||| | ||||||||| | |||| Sbjct 677 CGGTCAATGCAAGGGTTAGGTACTACACAGACTATTGCACACAG 720 > Ahg483469 jgi|Araly1|483469|fgenesh2_kg.4__2529__AT2G43580.1 Length=863 Score = 246 bits (133), Expect = 2e-64 Identities = 241/293 (82%), Gaps = 8/293 (3%) Strand=Plus/Plus Query 60 AGGTCCTTGTATAGGCGCTGGAACCACAAGCGCTGCCGAATCAGTCAGTAGCATTGTGAC 119 ||||||||||| || || |||| || ||| || ||| | | || ||||||||||||| Sbjct 170 AGGTCCTTGTAGAGTCGGTGGACCCCCAACCGGTGCTGGTTTGGTTGGTAGCATTGTGAC 229 Query 120 ACAAGGTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCACGAG-AAAAAGAT 178 |||| |||||||||||||||||||||||||||||||||||||||| | || ||||| || Sbjct 230 ACAAAATTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCGC-AGGAAAAATAT 288 Query 179 TCAACACCCGCGACTCTTTCATTGACGCTGCTAATAATTTTCCAAACTTTGC-AAGTTCC 237 | ||||||||||||||||||| |||| | |||| ||| || | |||||| || | || Sbjct 289 TTTACACCCGCGACTCTTTCATAAACGCCACCAATACTTTCCCCAGCTTTGCTAA-TACC 347 Query 238 GTTACAAGACGTGAAATTGCAAGCATGTTTGCTCATGTCACTCACGAGACCGGACACTTC 297 || || || ||||||||||| | ||||||||||||| ||||| ||||||| ||||||||| Sbjct 348 GTCACTAGGCGTGAAATTGCTACCATGTTTGCTCATTTCACTTACGAGACAGGACACTTC 407 Query 298 TGCTACATAGAAGAAATAAA-GAAAAGGTCACGTGGT-AGGTGCGACGAGAAC 348 |||||||||||||| ||||| | | | ||||||| | | ||||||| ||||| Sbjct 408 TGCTACATAGAAGAGATAAACGGAGCG-TCACGTG-TCATGTGCGACCAGAAC 458 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38084794083 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5