BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47550.3
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323367 jgi|Araly1|323367|fgenesh1_pm.C_scaffold_5000911 1351 0.0
> Ahg323367 jgi|Araly1|323367|fgenesh1_pm.C_scaffold_5000911
Length=879
Score = 1351 bits (731), Expect = 0.0
Identities = 819/863 (95%), Gaps = 0/863 (0%)
Strand=Plus/Plus
Query 190 ATGGCTGATCATTTGAGTTTATGTACCGATCGTCTCATAACATCTGAGAGCTTGGACTCA 249
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1 ATGGCTGATCATTTGAGTTTATGTACCGATCGTCTCATAACATCCGAGAGCTTGAACTCA 60
Query 250 GAGAAAGATTCAGATTCTTCAGGAGAAAGTTCTTACCGGCCTCAAGGCACAGACTTGGCT 309
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGAAAGATTCTGAGTCTTCTGGAGAAAGTTCTTACCGGCCTCAAGGCACAGACTTGGCT 120
Query 310 TCTTCATCTGTGAATGAAACTGAGGTTCCTAGAGAGTACTACGCGGTTGCGGATGAGGAA 369
|||||||||||| ||||| |||||| ||||||||||| |||||||||||||| ||||||
Sbjct 121 TCTTCATCTGTGGATGAAGCTGAGGAACCTAGAGAGTATTACGCGGTTGCGGAAGAGGAA 180
Query 370 GAACCTCTTCTCCAATCTGTTGAGTGTCGTATTTGCCAAGAGGAAGATAGTACTAAGAAC 429
||||| |||||||||||||| ||||||||||||||||| |||||||||| |||||||||
Sbjct 181 GAACCACTTCTCCAATCTGTGGAGTGTCGTATTTGCCAGGAGGAAGATACCACTAAGAAC 240
Query 430 CTTGAAGCTCCTTGTGCTTGTAATGGTAGTTTAAAGTATGCTCACCGCAAGTGTGTTCAG 489
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 241 CTTGAGGCTCCTTGTGCTTGTAATGGCAGTTTGAAGTATGCTCACCGCAAGTGTGTTCAG 300
Query 490 CGTTGGTGTAATGAGAAAGGCGACATAACCTGTGAAATATGTCACCAGCCTTATCAACAT 549
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 CGTTGGTGTAATGAGAAAGGCGACATAACCTGTGAAATATGTCACCAGCCTTATCAACCT 360
Query 550 GGATACACTGCACCTCCGCCTCCTCCTCCTGATGAAACTATAATTCACATCGGTGACGAT 609
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GGATATACAGCACCTCCGCCTCCTCCTCCTGATGAAACTATAATTCATATCGGTGACGAT 420
Query 610 TGGGAGAACGGAGTTCCGTTGGACTTGACCGACCCGCGCATTCTGGCAATGGCGGCTGCA 669
||||||||||||||||| |||||||||| ||| || ||||||||||||||||| || |||
Sbjct 421 TGGGAGAACGGAGTTCCCTTGGACTTGAGCGATCCACGCATTCTGGCAATGGCTGCAGCA 480
Query 670 GAACGTCATTTCTTGGAAGCAGACTATGATGAATATTCTGAGAATAACTCAAGCGGAGCT 729
|||||||||||||||||||| |||||||| || ||||||||| ||||||||||||||||
Sbjct 481 GAACGTCATTTCTTGGAAGCTGACTATGACGAGTATTCTGAGTCTAACTCAAGCGGAGCT 540
Query 730 GCCTTTTGTCGCTCTGCTGCTCTCATCCTAATGGCACTTTTACTGTTACGAGATGCGCTA 789
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 541 GCCTTTTGTCGCTCTGCTGCTCTCATCCTAATGGCACTTTTGCTGTTACGAGATGCACTA 600
Query 790 AATCTCACAACGAACCCAGACGACGAGGACGATCCAACTGCCTTCTTCTCTCTATTCCTT 849
||||||||||| ||| |||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 601 AATCTCACAACAAACTCAGATGACGAGGACGATCCAACTGCCTTCTTCTCGCTTTTCCTT 660
Query 850 CTTCGTGCTGCTGGTTTTCTCCTCCCATGTTACATCATGGCATGGGCCATCGGTATACTA 909
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTCGCGCTGCTGGTTTTCTCCTCCCATGTTACATCATGGCATGGGCCATCGGTATACTA 720
Query 910 CAACGTCGAAGACAAAGACAGGAAGCAGCGGCTCTAGCTGCCGCAGAAGTTACTTTCATG 969
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 721 CAACGTCGAAGACAAAGACAGGAAGCAGCGGCTCTAGCTGCCGCAGAAGTTGCTTTCATG 780
Query 970 ATACACGGTGGTGGGCCTCAACGCAGAGGACTGCACTTTGCTGTAGCACCGCAGCCGCCG 1029
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATACACGGTGGTGGGCCTCAACGCAGAGGACTGCACTTTGCTGTAGCACCGCAGCCGCCA 840
Query 1030 ATATCCAATGTCCCAACACCAGT 1052
|||||||||||||||||||||||
Sbjct 841 ATATCCAATGTCCCAACACCAGT 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49292931681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5