BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47560.2
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897601 jgi|Araly1|897601|Al_scaffold_0005_1567 920 0.0
Ahg922025 jgi|Araly1|922025|scaffold_103306.1 379 2e-104
Ahg347854 jgi|Araly1|347854|fgenesh1_pg.C_scaffold_5001246 379 2e-104
> Ahg897601 jgi|Araly1|897601|Al_scaffold_0005_1567
Length=867
Score = 920 bits (498), Expect = 0.0
Identities = 598/645 (93%), Gaps = 12/645 (2%)
Strand=Plus/Plus
Query 300 GAGAGAGTGAAGGCAGTTTCTATTATGGTAACTACAATTACGAAGCTGATGATCTACATT 359
||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||
Sbjct 218 GAGAGAGTGAAGGCAGTTTCTGTTATGGTAACTACAATTATGAAGCTGACGATCTACATT 277
Query 360 CTGTTATCCAATACTTCTCTAACTTGAACCGTGTTGTTACTATAATTCTCGGTCACAGTA 419
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 278 CTGTTATCCAATACTTCTCTAACTTGAACCGTGTGGTTACTATAATTCTTGGCCACAGTA 337
Query 420 AAGGAGGTGATGTGGTCCTCCTCTATGCCTCCAAGTATCACGATATCCCCAATGTGATCA 479
|||||||||||||||||||||||||||| || |||||||||||||||| |||||| ||||
Sbjct 338 AAGGAGGTGATGTGGTCCTCCTCTATGCATCTAAGTATCACGATATCCGCAATGTAATCA 397
Query 480 ATCTCTCGGGACGTTATGATCTGAAGAAAGGCATAGGAGAACGTCTTGGTGAAGATTTTT 539
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 398 ATCTCTCGGGACGTTATGATCTGAAGGAAGGCATAGGAGAACGTCTTGGTGAAAATTTTG 457
Query 540 TGGAAAGAATTAAGCAACAAGGATACATCGATGTTAAAGATGGTATTGTTATCGCTCTTC 599
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 TGGAAAGAATTAAGAAACAAGGATACATCGATGTTAAAGATGGTATTGTTATCGCTCTTT 517
Query 600 GCTTTTCATGCACCGT-T--ATCAGAACT-TTAGTGT-TACTATCAATGTA---CTGGTT 651
| ||||||||||| || | ||||||||| | | ||| | ||||||||||| ||||||
Sbjct 518 GGTTTTCATGCACTGTCTCAATCAGAACTCTCA-TGTGT-CTATCAATGTACTGCTGGTT 575
Query 652 TGTTACAGGAGATTCTGGTTACCGTGTTACCGAGGAGAGTTTGATGGACCGGTTAAACAC 711
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 576 TGTTACAGGAGATTCTGGTTACCGTGTTACCGAGGAAAGCTTGATGGACCGGTTAAACAC 635
Query 712 AGATATGCATGAAGCTTGCCTCAAGATTGACAAAGAATGCAGGGTCTTGACGGTCCATGG 771
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 636 AGATATGCATGAAGCTTGCCTCAAGATTGACAAAGAATGCAGGGTCTTGACTGTTCATGG 695
Query 772 ATCGGGTGACGAGACAGTACCAGTGGAAGATGCAAAGGAGTTTGCAAAGATAATACCGAA 831
||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 696 ATCGGCTGACGAGACAGTACCCGTGGAAGATGCAAAGGAGTTTGCAAAGATCATACCAAA 755
Query 832 CCACGAGCTACAGATTGTGGAAGGAGCTGATCATTGTTATACCAATTATCAAAGTCAATT 891
|||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 756 CCACAAGCTGGAGATTGTGGAAGGAGCTGATCATTGTTATACCAAACATCAAAGTCAATT 815
Query 892 GGTTTTAACGGTTATGGAGTTCATAAAGA--GTCATTGTGAAGaa 934
|||| ||| ||||||||||||||||| | ||||||||||||||
Sbjct 816 AGTTTCAACAGTTATGGAGTTCATAAACACCGTCATTGTGAAGAA 860
Score = 337 bits (182), Expect = 1e-91
Identities = 206/218 (94%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 2 ATGGATTCATCGCAGGGAAGTACACAACAGAAGATTGTGATTCTGAACAGCCACAATGAG 61
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGGATTCATCGCAGGGAAGTACACAACAGAAGATTGTGATTCCGAACAGCCACAATGAG 60
Query 62 AACCTGGTGGGTCTGCTTCATGAAACTGGTTCTACAGAAATTGTAGTCTTGTGTCATGGC 121
|| || ||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 AAGCTTGTGGGGATGCTTCATGAAACTGGTTCTACAGAAATTGTGGTCTTGTGTCATGGC 120
Query 122 TTTCGATCAAACAAGAACTTCGAAATTATGAAAAATGTGGCTGTTGCTATAGAGAGAGAA 181
|||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct 121 TTTCGATCAAACAAGAACTTTGTAATTATGAAAAATGTGGCTGTTGCTATAGAGAAAGAA 180
Query 182 GGGATTAGTGCTTTCCGTTTTGATTTCTCCGGGAATGG 219
|||||||| ||||||||||| |||||||| ||||||||
Sbjct 181 GGGATTAGCGCTTTCCGTTTCGATTTCTCTGGGAATGG 218
> Ahg922025 jgi|Araly1|922025|scaffold_103306.1
Length=833
Score = 379 bits (205), Expect = 2e-104
Identities = 256/281 (91%), Gaps = 2/281 (1%)
Strand=Plus/Plus
Query 300 GAGAGAGTGAAGGCAGTTTCTATTATGGTAACTACAATTACGAAGCTGATGATCTACATT 359
||||||||||||||| |||||||| |||||||||||| || |||||||||||||||||||
Sbjct 247 GAGAGAGTGAAGGCAATTTCTATTTTGGTAACTACAACTATGAAGCTGATGATCTACATT 306
Query 360 CTGTTATCCAATACTTCT-CTAACTTGAACCGTGTTGTTACTATAATTCTCGGTCACAGT 418
||||||||| |||||| | ||||| |||||||||| ||| |||||||| |||| ||||||
Sbjct 307 CTGTTATCCGATACTT-TACTAACATGAACCGTGTGGTTCCTATAATTATCGGCCACAGT 365
Query 419 AAAGGAGGTGATGTGGTCCTCCTCTATGCCTCCAAGTATCACGATATCCCCAATGTGATC 478
||||||||||||||||||||| |||||||||| || ||||||||||||| |||||| |||
Sbjct 366 AAAGGAGGTGATGTGGTCCTCGTCTATGCCTCGAAATATCACGATATCCGCAATGTAATC 425
Query 479 AATCTCTCGGGACGTTATGATCTGAAGAAAGGCATAGGAGAACGTCTTGGTGAAGATTTT 538
||||||||||||||||||||||||||| ||||||||||| | |||||||| |||||||||
Sbjct 426 AATCTCTCGGGACGTTATGATCTGAAGGAAGGCATAGGACAGCGTCTTGGGGAAGATTTT 485
Query 539 TTGGAAAGAATTAAGCAACAAGGATACATCGATGTTAAAGA 579
|||||| |||| ||||||||||||| ||||||| |||||||
Sbjct 486 TTGGAACGAATAAAGCAACAAGGATTCATCGATATTAAAGA 526
Score = 326 bits (176), Expect = 3e-88
Identities = 246/280 (88%), Gaps = 4/280 (1%)
Strand=Plus/Plus
Query 658 AGGAGATTCT-GGTTACCGTGTTACCGAGGAGAGTTTGATGGACCGGTTAAACACAGATA 716
|||| | ||| |||| ||||||||||||||||| || ||||| |||||||||| ||||
Sbjct 527 AGGAAACTCTGGGTT-TCGTGTTACCGAGGAGAGCTTAATGGAAAGGTTAAACACTGATA 585
Query 717 TGCATGAAGCTTGCCTCAAGATTGACAAAGAATGCAGGGTCTTGACGGTCCATGGATCGG 776
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 586 TGCATGAAGCTTGCCTCAAAATTGACAAAGAATGCAGGGTCTTGACGGTTCATGGATCGG 645
Query 777 GTGACGAGACAGTACCAGTGGAAGATGCAAAGGAGTTTGCAAAGATAATACCGAACCACG 836
||||||| | |||| ||| |||||| ||||||||||||||||| |||||||||||
Sbjct 646 CTGACGAGGTAATACCCCTGGGAGATGCCAAGGAGTTTGCAAAGATCATACCGAACCATA 705
Query 837 AGCTACAGATTGTGGAAGGAGCTGATCATTGTTATACCAATTATCAAAGTCAATTGGTTT 896
| || |||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 706 AACTGGAGATTGTGGAAGGAGCTGATCATTGTTATACCAAACATCAAAGTCAATTAGTTA 765
Query 897 TAACGGTTATGGAGTTCATAAAGA--GTCATTGTGAAGaa 934
||| ||||||||||||||||||| ||||||||||||||
Sbjct 766 CAACAGTTATGGAGTTCATAAAGACAGTCATTGTGAAGAA 805
> Ahg347854 jgi|Araly1|347854|fgenesh1_pg.C_scaffold_5001246
Length=933
Score = 379 bits (205), Expect = 2e-104
Identities = 257/283 (91%), Gaps = 0/283 (0%)
Strand=Plus/Plus
Query 300 GAGAGAGTGAAGGCAGTTTCTATTATGGTAACTACAATTACGAAGCTGATGATCTACATT 359
|||||||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct 368 GAGAGAGTGAAGGCAGTTTCTATTATGGTAACTATAACCATGAAGCTGATGATCTACATT 427
Query 360 CTGTTATCCAATACTTCTCTAACTTGAACCGTGTTGTTACTATAATTCTCGGTCACAGTA 419
||||||||||||||||| ||||| ||||||||| ||| |||| |||||||| || ||||
Sbjct 428 CTGTTATCCAATACTTCACTAACAAGAACCGTGTGGTTCCTATCATTCTCGGGCATAGTA 487
Query 420 AAGGAGGTGATGTGGTCCTCCTCTATGCCTCCAAGTATCACGATATCCCCAATGTGATCA 479
| ||||||||||| || ||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct 488 AGGGAGGTGATGTTGTTCTCCTCTATGCCTCCAAGTATCACGATGTCCGCAATGTAATCA 547
Query 480 ATCTCTCGGGACGTTATGATCTGAAGAAAGGCATAGGAGAACGTCTTGGTGAAGATTTTT 539
|||||||||||||||||||||| || ||||||||| |||| |||||||||||||||||||
Sbjct 548 ATCTCTCGGGACGTTATGATCTTAAAAAAGGCATAAGAGAGCGTCTTGGTGAAGATTTTT 607
Query 540 TGGAAAGAATTAAGCAACAAGGATACATCGATGTTAAAGATGG 582
|||||||||||||||||||||||| ||| |||||| ||||||
Sbjct 608 TGGAAAGAATTAAGCAACAAGGATTCATTGATGTTGGAGATGG 650
Score = 318 bits (172), Expect = 4e-86
Identities = 233/263 (89%), Gaps = 2/263 (1%)
Strand=Plus/Plus
Query 674 CGTGTTACCGAGGAGAGTTTGATGGACCGGTTAAACACAGATATGCATGAAGCTTGCCTC 733
|||||||| ||| ||||||| |||||| |||||| ||| |||||||||||||||||||||
Sbjct 664 CGTGTTACTGAGAAGAGTTTAATGGACAGGTTAAGCACTGATATGCATGAAGCTTGCCTC 723
Query 734 AAGATTGACAAAGAATGCAGGGTCTTGACGGTCCATGGATCGGGTGACGAGACAGTACCA 793
|||||||||||||||||||||||||||||||| |||||||||| ||||||| | |||
Sbjct 724 AAGATTGACAAAGAATGCAGGGTCTTGACGGTTCATGGATCGGCTGACGAGGTAATACGT 783
Query 794 GTGGAAGATGCAAAGGAGTTTGCAAAGATAATACCGAACCACGAGCTACAGATTGTGGAA 853
||||||||||| ||||||||||| ||||| |||||||||||| |||| |||||||||||
Sbjct 784 GTGGAAGATGCGAAGGAGTTTGCGAAGATCATACCGAACCACAAGCTGGAGATTGTGGAA 843
Query 854 GGAGCTGATCATTGTTATACCAATTATCAAAGTCAATTGGTTTTAACGGTTATGGAGTTC 913
||||||||||||||||||||| | | ||||||||||| |||| ||| ||||||||||||
Sbjct 844 GGAGCTGATCATTGTTATACCGAGCACCAAAGTCAATTAGTTTCAACAGTTATGGAGTTC 903
Query 914 ATAAAGA--GTCATTGTGAAGaa 934
||||||| |||||| ||| |||
Sbjct 904 ATAAAGACAGTCATTATGATGAA 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38961621174
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5