BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47590.1
Length=1319
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347854 jgi|Araly1|347854|fgenesh1_pg.C_scaffold_5001246 1406 0.0
Ahg922025 jgi|Araly1|922025|scaffold_103306.1 907 0.0
Ahg897601 jgi|Araly1|897601|Al_scaffold_0005_1567 542 3e-153
Ahg906425 jgi|Araly1|906425|Al_scaffold_0003_3553 494 9e-139
> Ahg347854 jgi|Araly1|347854|fgenesh1_pg.C_scaffold_5001246
Length=933
Score = 1406 bits (761), Expect = 0.0
Identities = 876/932 (94%), Gaps = 5/932 (1%)
Strand=Plus/Plus
Query 16 ATGAGAACTCTTTTGCACAACTTCAATTTTGTCCCTCAAGATTCTCCTTATTACAAAACG 75
||||||||||||||||| || |||| ||||| |||||||||||||| ||||||||||||
Sbjct 1 ATGAGAACTCTTTTGCAAAAATTCAGTTTTGCCCCTCAAGATTCTCTTTATTACAAAACT 60
Query 76 TCCCCTTTTCCCACATCATCCTTCTTCAACGTTCGCTTTCCCATCAAGAACAA-C--CAA 132
||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |||
Sbjct 61 TCCCCTTTTCCCAAATCATCCTTCTTCAACGTTCGCCTTCCCATCAAGAACAATCAACAA 120
Query 133 ATCTCTTGTAACAAAGCAAAGAATTTGAGAATGGATCCGTCTAAGGGAATCCAAGAACAG 192
|||||||| ||||||||||| ||||||||||||||| ||||||||||||| |||||||||
Sbjct 121 ATCTCTTGCAACAAAGCAAACAATTTGAGAATGGATTCGTCTAAGGGAATTCAAGAACAG 180
Query 193 AGGATTGTGATTCCAAACAGACACAACGAGAAGCTGGTTGGTCTGCTTCATGAAACTGGT 252
|||||||||||||| ||| |||||||| |||||||||||||||| |||||||||||||||
Sbjct 181 AGGATTGTGATTCCGAACGGACACAACCAGAAGCTGGTTGGTCTACTTCATGAAACTGGT 240
Query 253 TCTACAGACA-TCGTAGTCTTGTGCCATGGCTTTCGATCAAACAAGAGTAACCAAATAAT 311
|| ||||| | | ||||||||||||||||| |||||||| ||||||| ||||||||| ||
Sbjct 241 TCAACAGA-AGTTGTAGTCTTGTGCCATGGATTTCGATCTAACAAGAATAACCAAATTAT 299
Query 312 GAATAATGTGGCTGCTGCTATACAGAAAGAAGGGATCAGCGCTTTTCGTTTTGATTTCTC 371
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 300 GAATAATGTGGCTGCTGCTATAGAGAAAGAAGGAATCAGCGCTTTTCGTTTTGATTTCTC 359
Query 372 CGGGAATGGAGAGAGTGAAGGCAGTTTCTATTATGGTAACTATAACCATGAAGCTGATGA 431
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGGGAATGGAGAGAGTGAAGGCAGTTTCTATTATGGTAACTATAACCATGAAGCTGATGA 419
Query 432 TTTACATTCTGTTGTCCAATACTTCTCTAACAAGAACCGTGTGGTTCCTATAATCCTCGG 491
| ||||||||||| ||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 420 TCTACATTCTGTTATCCAATACTTCACTAACAAGAACCGTGTGGTTCCTATCATTCTCGG 479
Query 492 TCACAGTAAGGGAGGTGATGTTGTCCTCCTCTACGCCTCCAAGTATCATGATGTCCGCAA 551
|| |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 480 GCATAGTAAGGGAGGTGATGTTGTTCTCCTCTATGCCTCCAAGTATCACGATGTCCGCAA 539
Query 552 TGTAATCAATCTCTCGGGACGTTATGATCTTAAAAAGGGTATAAGAGAGCGTCTTGGAGA 611
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 540 TGTAATCAATCTCTCGGGACGTTATGATCTTAAAAAAGGCATAAGAGAGCGTCTTGGTGA 599
Query 612 AGATTTTTTGGAAAGAATTAAGCAACAAGGATTCATCGATGTTGGAGATGGAAAATCGGG 671
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 AGATTTTTTGGAAAGAATTAAGCAACAAGGATTCATTGATGTTGGAGATGGAAAATCGGG 659
Query 672 GTATCGTGTTACTGAGAAGAGCTTAATGGACAGGTTAAGCACTGATATTCATGAAGCTTG 731
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 660 GTATCGTGTTACTGAGAAGAGTTTAATGGACAGGTTAAGCACTGATATGCATGAAGCTTG 719
Query 732 CCTCAAGATTGACAAAGAGTGCAGGGTCTTGACGGTTCATGGATCGGAGGACGAGGTAAT 791
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 720 CCTCAAGATTGACAAAGAATGCAGGGTCTTGACGGTTCATGGATCGGCTGACGAGGTAAT 779
Query 792 ACCTGTGGAAGATGCGAAGGAGTTTGCGAAGATCATACCAAACCACAAGCTGGAGATTGT 851
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 ACGTGTGGAAGATGCGAAGGAGTTTGCGAAGATCATACCGAACCACAAGCTGGAGATTGT 839
Query 852 GGAAGGAGCTAATCATGGTTATACTGAGCACCAAAGTCAATTAGTTTCAACAGTTATGGA 911
|||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 840 GGAAGGAGCTGATCATTGTTATACCGAGCACCAAAGTCAATTAGTTTCAACAGTTATGGA 899
Query 912 GTTCATAAAGACAGTCATTGTGAAGAACAACT 943
||||||||||||||||||| ||| ||||||||
Sbjct 900 GTTCATAAAGACAGTCATTATGATGAACAACT 931
> Ahg922025 jgi|Araly1|922025|scaffold_103306.1
Length=833
Score = 907 bits (491), Expect = 0.0
Identities = 672/761 (88%), Gaps = 6/761 (1%)
Strand=Plus/Plus
Query 188 AACAGAGGATTGTGATTCCAAACAGAC-ACAACGAGAAGCTGGTTGGTCTGCTTCATGAA 246
|||| | ||| |||||||| ||||| | |||| |||||||| || |||||||||||||||
Sbjct 55 AACAAAAGATAGTGATTCCTAACAG-CAACAATGAGAAGCTTGTGGGTCTGCTTCATGAA 113
Query 247 ACTGGTTCTACAGACATCGTAGTCTTGTGCCATGGCTTTCGATCAAACAAGAGTAACCAA 306
|||||||| ||||| || || ||||||||||||||||||||||||| ||||| | |||
Sbjct 114 ACTGGTTCCACAGAAATTGTTGTCTTGTGCCATGGCTTTCGATCAACCAAGAATGACCTG 173
Query 307 ATAATGAATAATGTGGCTGCTGCTATACAGAAAGAAGGGATCAGCGCTTTTCGTTTTGAT 366
| ||||| ||||| |||||||||||| |||||||||||||||| ||||| |||||||||
Sbjct 174 GTCATGAAAAATGTTGCTGCTGCTATAGAGAAAGAAGGGATCAGTGCTTTCCGTTTTGAT 233
Query 367 TTCTCCGGGAATGGAGAGAGTGAAGGCAGTTTCTATTATGGTAACTATAACCATGAAGCT 426
||||| |||||||||||||||||||||| |||||||| ||||||||| ||| ||||||||
Sbjct 234 TTCTCTGGGAATGGAGAGAGTGAAGGCAATTTCTATTTTGGTAACTACAACTATGAAGCT 293
Query 427 GATGATTTACATTCTGTTGTCCAATACTTCT-CTAACAAGAACCGTGTGGTTCCTATAAT 485
|||||| ||||||||||| ||| |||||| | |||||| |||||||||||||||||||||
Sbjct 294 GATGATCTACATTCTGTTATCCGATACTT-TACTAACATGAACCGTGTGGTTCCTATAAT 352
Query 486 CCTCGGTCACAGTAAGGGAGGTGATGTTGTCCTCCTCTACGCCTCCAAGTATCATGATGT 545
|||| |||||||| ||||||||||| |||||| |||| ||||| || ||||| ||| |
Sbjct 353 TATCGGCCACAGTAAAGGAGGTGATGTGGTCCTCGTCTATGCCTCGAAATATCACGATAT 412
Query 546 CCGCAATGTAATCAATCTCTCGGGACGTTATGATCTTAA-AAAGGGTATAAGAGAGCGTC 604
|||||||||||||||||||||||||||||||||||| || || || ||| || ||||||
Sbjct 413 CCGCAATGTAATCAATCTCTCGGGACGTTATGATCTGAAGGAA-GGCATAGGACAGCGTC 471
Query 605 TTGGAGAAGATTTTTTGGAAAGAATTAAGCAACAAGGATTCATCGATGTTGGAGATGGAA 664
|||| ||||||||||||||| |||| ||||||||||||||||||||| || ||| ||||
Sbjct 472 TTGGGGAAGATTTTTTGGAACGAATAAAGCAACAAGGATTCATCGATATTAAAGAAGGAA 531
Query 665 AATCGGGGTATCGTGTTACTGAGAAGAGCTTAATGGACAGGTTAAGCACTGATATTCATG 724
| || |||| ||||||||| ||| ||||||||||||| ||||||| ||||||||| ||||
Sbjct 532 ACTCTGGGTTTCGTGTTACCGAGGAGAGCTTAATGGAAAGGTTAAACACTGATATGCATG 591
Query 725 AAGCTTGCCTCAAGATTGACAAAGAGTGCAGGGTCTTGACGGTTCATGGATCGGAGGACG 784
||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 592 AAGCTTGCCTCAAAATTGACAAAGAATGCAGGGTCTTGACGGTTCATGGATCGGCTGACG 651
Query 785 AGGTAATACCTGTGGAAGATGCGAAGGAGTTTGCGAAGATCATACCAAACCACAAGCTGG 844
|||||||||| ||| |||||| ||||||||||| ||||||||||| ||||| || ||||
Sbjct 652 AGGTAATACCCCTGGGAGATGCCAAGGAGTTTGCAAAGATCATACCGAACCATAAACTGG 711
Query 845 AGATTGTGGAAGGAGCTAATCATGGTTATACTGAGCACCAAAGTCAATTAGTTTCAACAG 904
||||||||||||||||| ||||| ||||||| | || ||||||||||||||| ||||||
Sbjct 712 AGATTGTGGAAGGAGCTGATCATTGTTATACCAAACATCAAAGTCAATTAGTTACAACAG 771
Query 905 TTATGGAGTTCATAAAGACAGTCATTGTGAAGAACAACTAG 945
|||||||||||||||||||||||||||||||||| ||||||
Sbjct 772 TTATGGAGTTCATAAAGACAGTCATTGTGAAGAATAACTAG 812
> Ahg897601 jgi|Araly1|897601|Al_scaffold_0005_1567
Length=867
Score = 542 bits (293), Expect = 3e-153
Identities = 434/503 (86%), Gaps = 6/503 (1%)
Strand=Plus/Plus
Query 163 ATGGATCCGTCTAAGGGAA-TCCAAGAACAGAGGATTGTGATTCCAAACAGACACAACGA 221
|||||| | || |||||| | | | |||||| |||||||||||| ||||| ||||| ||
Sbjct 1 ATGGATTCATCGCAGGGAAGTAC-ACAACAGAAGATTGTGATTCCGAACAGCCACAATGA 59
Query 222 GAAGCTGGTTGGTCTGCTTCATGAAACTGGTTCTACAGACATCGTAGTCTTGTGCCATGG 281
|||||| || || ||||||||||||||||||||||||| || || |||||||| |||||
Sbjct 60 GAAGCTTGTGGGGATGCTTCATGAAACTGGTTCTACAGAAATTGTGGTCTTGTGTCATGG 119
Query 282 CTTTCGATCAAACAAG-AGTAACCAAATAATGAATAATGTGGCTGCTGCTATACAGAAAG 340
|||||||||||||||| | | ||| ||||| |||||||||| ||||||| ||||||
Sbjct 120 CTTTCGATCAAACAAGAACT-TTGTAATTATGAAAAATGTGGCTGTTGCTATAGAGAAAG 178
Query 341 AAGGGATCAGCGCTTTTCGTTTTGATTTCTCCGGGAATGGAGAGAGTGAAGGCAGTTTCT 400
||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 179 AAGGGATTAGCGCTTTCCGTTTCGATTTCTCTGGGAATGGAGAGAGTGAAGGCAGTTTCT 238
Query 401 ATTATGGTAACTATAACCATGAAGCTGATGATTTACATTCTGTTGTCCAATACTTCTCTA 460
|||||||||||| || |||||||||| ||| ||||||||||| |||||||||||||||
Sbjct 239 GTTATGGTAACTACAATTATGAAGCTGACGATCTACATTCTGTTATCCAATACTTCTCTA 298
Query 461 ACAAGAACCGTGTGGTTCCTATAATCCTCGGTCACAGTAAGGGAGGTGATGTTGTCCTCC 520
|| ||||||||||||| ||||||| || || |||||||| ||||||||||| |||||||
Sbjct 299 ACTTGAACCGTGTGGTTACTATAATTCTTGGCCACAGTAAAGGAGGTGATGTGGTCCTCC 358
Query 521 TCTACGCCTCCAAGTATCATGATGTCCGCAATGTAATCAATCTCTCGGGACGTTATGATC 580
|||| || || |||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 359 TCTATGCATCTAAGTATCACGATATCCGCAATGTAATCAATCTCTCGGGACGTTATGATC 418
Query 581 TTAAA-AAGGGTATAAGAGAGCGTCTTGGAGAAGATTTTTTGGAAAGAATTAAGCAACAA 639
| || |||| ||| |||| |||||||| ||| ||||| |||||||||||||| |||||
Sbjct 419 TGAAGGAAGGC-ATAGGAGAACGTCTTGGTGAAAATTTTGTGGAAAGAATTAAGAAACAA 477
Query 640 GGATTCATCGATGTTGGAGATGG 662
|||| |||||||||| ||||||
Sbjct 478 GGATACATCGATGTTAAAGATGG 500
Score = 355 bits (192), Expect = 4e-97
Identities = 245/271 (90%), Gaps = 2/271 (1%)
Strand=Plus/Plus
Query 676 CGTGTTACTGA-GAAGAGCTTAATGGACAGGTTAAGCACTGATATTCATGAAGCTTGCCT 734
|||||||| || ||| ||||| |||||| |||||| ||| ||||| ||||||||||||||
Sbjct 598 CGTGTTACCGAGGAA-AGCTTGATGGACCGGTTAAACACAGATATGCATGAAGCTTGCCT 656
Query 735 CAAGATTGACAAAGAGTGCAGGGTCTTGACGGTTCATGGATCGGAGGACGAGGTAATACC 794
||||||||||||||| |||||||||||||| ||||||||||||| |||||| | ||||
Sbjct 657 CAAGATTGACAAAGAATGCAGGGTCTTGACTGTTCATGGATCGGCTGACGAGACAGTACC 716
Query 795 TGTGGAAGATGCGAAGGAGTTTGCGAAGATCATACCAAACCACAAGCTGGAGATTGTGGA 854
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 717 CGTGGAAGATGCAAAGGAGTTTGCAAAGATCATACCAAACCACAAGCTGGAGATTGTGGA 776
Query 855 AGGAGCTAATCATGGTTATACTGAGCACCAAAGTCAATTAGTTTCAACAGTTATGGAGTT 914
||||||| ||||| ||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 777 AGGAGCTGATCATTGTTATACCAAACATCAAAGTCAATTAGTTTCAACAGTTATGGAGTT 836
Query 915 CATAAAGACAGTCATTGTGAAGAACAACTAG 945
|||||| || |||||||||||||||||||||
Sbjct 837 CATAAACACCGTCATTGTGAAGAACAACTAG 867
> Ahg906425 jgi|Araly1|906425|Al_scaffold_0003_3553
Length=837
Score = 494 bits (267), Expect = 9e-139
Identities = 617/781 (79%), Gaps = 43/781 (6%)
Strand=Plus/Plus
Query 188 AACAGAGGATTGTGATTCCAAACAGACACAACGAGAAGCTGGTTGGTCTGCTTCATGAAA 247
||| || ||| |||||||| ||| | | |||||||||||| || ||||||||||| ||||
Sbjct 9 AAC-GAAGATCGTGATTCCGAACCGCCGCAACGAGAAGCTCGTGGGTCTGCTTCACGAAA 67
Query 248 CTGGTTCTACAGACATCGTAGTCTTGTGCCATGGCTTTCGATCAAACAAGAG-TAACCAA 306
| || || | |||| | || ||||| |||||||||||| |||| |||| || || |||
Sbjct 68 CCGGATCAAAAGACGTTGTGGTCTTATGCCATGGCTTTAGATCGGACAA-AGCCAA-CAA 125
Query 307 -ATAATGAATAATGTGGCTGCTGCTATACAGAAAGAAGGGATCAGCGCTTTTCGTTTTGA 365
|| |||| ||||||||| | ||| || ||| |||| |||||| ||||||| || ||
Sbjct 126 GATTCTGAAGAATGTGGCTACAGCTCTAGAGATAGAAAAAATCAGCTCTTTTCGATTCGA 185
Query 366 TTTCTCCGGGAATGGAGAGAGTGAAGGCAGTTTCTATTATGGTAACTAT-AACCA-TGAA 423
||||||||| || ||||| |||||||| | ||| || |||||||||| | || || ||||
Sbjct 186 TTTCTCCGGCAACGGAGATAGTGAAGGAACTTTTTACTATGGTAACT-TCAA-CAGTGAA 243
Query 424 GC---TGATGATTTAC-ATTCTGTTGTCCAATAC-T-T-CTCTAACAAGAACCGTGTGGT 476
|| |||||| | | | | ||| | ||| || | | ||| |||| ||||||||| ||
Sbjct 244 GCAGAGGATGATCTGCAAAAC-GTTATTCAACACTTGTCCTCAAACATGAACCGTGTAGT 302
Query 477 TCCTATAATCCTCGGTCACAGTAAGGGAGGTGATGTTGTCCTCCTCTACGCCTCCAAGTA 536
|||| | || || ||||| ||||| |||||||||||||| | ||||| || || |||||
Sbjct 303 TCCTGTGATTCTAGGTCATAGTAAAGGAGGTGATGTTGTTGTTCTCTATGCTTCAAAGTA 362
Query 537 T--C-ATGATGTCCGCAATGTAATCAATCTCTCGGGACGTTATGATCTTAAA-AAGGGTA 592
| | || || ||||||||||| ||||| | |||||||||| ||||| |||| || ||
Sbjct 363 TGGCGATAATATCCGCAATGTAGTCAATATTTCGGGACGTTTTGATC-TAAAGAAAGG-- 419
Query 593 TAAGAGAGCGTCTTGGAGAAGATTTTTTGG-AAAGAATTAAGCAACAAGGATTCATCGAT 651
| | | ||||||||||| | || | ||| |||| || ||| ||||||| ||||| |||
Sbjct 420 T--G-TA-CGTCTTGGAGATGGTTATATGGAAAAG-ATCAAGGAACAAGGGTTCATTGAT 474
Query 652 GTTGGAGATGGAAAATCGGGGTAT-CGTGTTACTGAGAAGAG-C-TTAATGGACAGGTTA 708
| | ||| || ||||| || | ||||||||| ||||| | |||||||| ||||||
Sbjct 475 GCTACAGAGGGGAAATC-TTGTTTCCGTGTTACT--CAAGAGTCTTTAATGGATAGGTTA 531
Query 709 AGCACTGATATTCATGAAGCTTGCCTCAAGATTGACAAAGAGTGCAGGGTCTTGACGGTT 768
| ||||||||| ||||||||||| ||||||||||| ||||| |||| || |||||||||
Sbjct 532 AACACTGATATGCATGAAGCTTGTCTCAAGATTGATAAAGAATGCAAAGTTTTGACGGTT 591
Query 769 CATGGATCGGAGGACGA-GGTAATACCTGTGGAAGATGCGAAGGAGTTTGCGAAGATCAT 827
||||| ||||| ||| | ||| |||||||||||||||| ||||||||||| ||| | ||
Sbjct 592 CATGGTTCGGATGAC-ACGGTTGTACCTGTGGAAGATGCTAAGGAGTTTGCAAAGGTTAT 650
Query 828 ACCAAACCACAAGCTGGAGATTGTGGAAGGAGCTAATCATGGTTATACTGAGCACCA-AA 886
||| || || ||||||||||||||||||||||||||||||||||| ||| | ||||| ||
Sbjct 651 ACCGAATCATAAGCTGGAGATTGTGGAAGGAGCTAATCATGGTTACACTAAACACCAGAA 710
Query 887 GTCAATTAGTTTCAACAGTTATGGAGTTCATAAAGACAGTC-ATTGT-GAAGAACAACTA 944
| |||| ||||| | |||| ||||||| |||||||| | | ||||| |||||||| |||
Sbjct 711 GG-AATTGGTTTCGATAGTTGTGGAGTTTATAAAGACTG-CGATTGTCGAAGAACAGCTA 768
Query 945 G 945
|
Sbjct 769 G 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49331054598
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5