BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47600.1
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937505 jgi|Araly1|937505|scaffold_501696.1 1718 0.0
Ahg496423 jgi|Araly1|496423|fgenesh2_kg.8__2239__AT5G62470.1 538 4e-152
Ahg919629 jgi|Araly1|919629|scaffold_100910.1 294 1e-78
Ahg484660 jgi|Araly1|484660|fgenesh2_kg.5__652__AT3G28910.1 268 6e-71
Ahg336488 jgi|Araly1|336488|fgenesh1_pg.C_scaffold_1003053 213 3e-54
Ahg488379 jgi|Araly1|488379|fgenesh2_kg.6__1513__AT5G15310.1 128 1e-28
> Ahg937505 jgi|Araly1|937505|scaffold_501696.1
Length=1043
Score = 1718 bits (930), Expect = 0.0
Identities = 1009/1047 (96%), Gaps = 5/1047 (0%)
Strand=Plus/Plus
Query 174 TATTTACATAGAGAAGATAGAGATGGGAAGACCACCATGCTGTGACAAGATTGGAGTGAA 233
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATATACATAGAGAAGATTGAGATGGGAAGACCACCATGCTGTGACAAGATTGGAGTGAA 60
Query 234 GAAAGGACCATGGACACCAGAGGAAGATATCATCTTGGTTTCTTACATCCAAGAACATGG 293
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAAGGGCCATGGACACCAGAGGAAGATATCATCTTGGTTTCTTACATCCAAGAACATGG 120
Query 294 TCCTGGAAACTGGAGATCTGTGCCTACTCACACAGGTTTGAGGAGATGTAGCAAAAGCTG 353
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 121 TCCTGGAAACTGGAGATCTGTGCCTACTCATACAGGTTTGAGGAGATGTAGCAAAAGTTG 180
Query 354 TAGATTGAGGTGGACTAATTATCTTCGACCTGGGATCAAGCGTGGAAATTTCACCGAGCA 413
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 TAGATTGAGGTGGACTAATTATCTTCGACCTGGGATTAAGCGTGGAAATTTCACCGAGCA 240
Query 414 TGAAGAGAAGATGATTCTCCATCTTCAAGCTCTTTTGGGAAACAGGTGGGCAGCTATAGC 473
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 TGAAGAGAAGATGATTCTCCATCTTCAAGCTCTTTTGGGCAACAGGTGGGCAGCTATAGC 300
Query 474 ATCATATCTTCCAGAAAGGACAGACAATGATATAAAGAACTATTGGAACACTCATTTGAA 533
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCATACCTTCCAGAAAGGACAGACAATGATATAAAGAACTATTGGAACACTCATTTGAA 360
Query 534 GAAAAAGCTCAAGAAGATGAATGATTCTTGTGATAGTACTATCAACAATGGCCTTGATAA 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 GAAAAAGCTCAAGAAGATGAATGATTCTTGTGATAGTACTATCAACAATGGCCTTGATGA 420
Query 594 TAAAGACTTCTCCAT-ATCAAACAAAAACACTACCTCACATCAAAGCAGCAACTCCAGTA 652
|||||||||||| | |||||||||||||||||| |||||||||||||||||| |||| |
Sbjct 421 TAAAGACTTCTCT-TCATCAAACAAAAACACTACTTCACATCAAAGCAGCAACCCCAGCA 479
Query 653 AAGGTCAATGGGAGAGAAGGCTTCAGACAGATATCAACATGGCTAAACAAGCTCTTTGTG 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAGGTCAATGGGAGAGAAGGCTTCAGACAGATATCAACATGGCTAAACAAGCTCTTTGTG 539
Query 713 ATGCCTTGTCTATTGACAAACCACAAAACCCAACTAATTTTTCTATTCCCGATCTTGGTT 772
||||||||||| |||||||||||||||||||| ||||||| |||||| ||||||||||||
Sbjct 540 ATGCCTTGTCTCTTGACAAACCACAAAACCCATCTAATTTCTCTATTACCGATCTTGGTT 599
Query 773 ATGGTCCATCATCTTCTTCGTCCTCTaccaccaccaccaccaccaccacGAGAAACACTA 832
||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||
Sbjct 600 ATGGTCCATCATCTTCTTCTTCCTCTACCACCACCACCACCACCAC-A--AGAAACACTA 656
Query 833 ATCCATACCCATCTGGGGTCTATGCTTCAAGTGCTGAGAACATTGCTCGTTTGCTTCAGA 892
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 657 ATCCATACCCATCTGGGGTCTATGCTTCAAGCGCAGAGAACATCGCTCGTTTGCTTCAGA 716
Query 893 ATTTTATGAAAGACACACCAAAGACCTCGGTGCCCTTGCCGGTTGCAGCCACCGAGATGG 952
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 717 ATTTTATGAAAGACACACCAAAGACCTCGGTGCCCTCGCCGGTTGCAGCCACCGGGATGG 776
Query 953 CTATCACCACGGCAGCTTCGAGCCCTAGCACAACCGAAGGAGACGGAGAAGGGATTGACC 1012
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CTATCACCACGGCGGCTTCGAGCCCTAGCACAACCGAAGGAGACGGAGAAGGGATTGACC 836
Query 1013 ATTCTTTGTTCAGCTTCAACTCCATAGATGAAGCTGAAGAGAAGCCTAAACTAATAGACC 1072
||||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||||||
Sbjct 837 ATTCTTTATTCAGCTTCAACTCCATGGATGAAGCTGAAAAGAAGCCAAAACTAATAGACA 896
Query 1073 ATGACATTAATGGTCTAATTACACAAGGCTCTCTTTCTTTGTTCGAGAAATGGCTCTTTG 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ATGACATTAATGGTCTAATTACACAAGGCTCTCTTTCTTTGTTCGAGAAATGGCTCTTTG 956
Query 1133 ATGAGCAAAGCCACGATATGATCATCAATAACATGTCACTAGAGGGTCAGGAAGTGTTGT 1192
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 957 ATGAGCAAAGCCATGATATGATCATCAATAACATGTCACTAGAGGGTCAAGAAGTGTTGT 1016
Query 1193 TCTAGAAAGCATTAAAGTTTGACGATT 1219
||||||||||| ||||||||||||||
Sbjct 1017 TCTAGAAAGCAAAAAAGTTTGACGATT 1043
> Ahg496423 jgi|Araly1|496423|fgenesh2_kg.8__2239__AT5G62470.1
Length=1221
Score = 538 bits (291), Expect = 4e-152
Identities = 465/544 (85%), Gaps = 32/544 (6%)
Strand=Plus/Plus
Query 196 ATGGGAAGACCACCATGCTGTGACAAGATTGGAGTGAAGAAAGGACCATGGACACCAGAG 255
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGACCATGGACACCAGAG 60
Query 256 GAAGATATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTG 315
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTC 120
Query 316 CCTACTCACACAGGTTTGAGGAGATGTAGCAAAAGCTGTAGATTGAGGTGGACTAATTAT 375
|| ||| ||||||||||||| | |||||||| ||||| |||||||| ||||||||||||
Sbjct 121 CCAACTAACACAGGTTTGAG-A--TGTAGCAAGAGCTGCAGATTGAGATGGACTAATTAT 177
Query 376 CTTCGACCTGGGATCAAGCGTGGAAATTTCACCGAGCATGAAGAGAAGA-TGATTCTCCA 434
|||||||| || || |||||||||||||| || |||||||||||||||| | ||| | ||
Sbjct 178 CTTCGACCCGGTATTAAGCGTGGAAATTTTACTGAGCATGAAGAGAAGACT-ATTGTTCA 236
Query 435 TCTTCAAGCTCTTTTGGGAAACAGGTGGGCAGCTATAGCATCATATCTTCCAGAAAGGAC 494
||||||||| ||||| || ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 237 TCTTCAAGCCCTTTTAGGCAACAGATGGGCAGCCATAGCATCATACCTTCCAGAAAGGAC 296
Query 495 AGACAATGATATAAAGAACTATTGGAACACTCATTTGAAGAAAAAGCTCAAGAAGATGAA 554
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | ||
Sbjct 297 AGACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAAGAAGGTTAA 356
Query 555 TGATTCTTGTGATAGTACTATCAACAATGGCCT-TGATAATAAAGACTTCTCCATATCAA 613
||| ||| |||| || | || || |||| | | | || || || || | |||
Sbjct 357 TGAATCTGGTGA-AGAAG-AT-AATGATGGTGTCTCCTCATCAA-ACA-CT--AGCTCA- 408
Query 614 ACAAAAACACTACCTCACATCAAAGCAGC-AACTCCAGTAAAGGTCAATGGGAGAGAAGG 672
||||| | ||| | |||||||| | ||| | || ||||||||||| |||||
Sbjct 409 -CAAAAG-A--ACC--A--TCAAAGCA-CTAAC---A--AA-GGTCAATGGGAAAGAAGA 453
Query 673 CTTCAGACAGATATCAACATGGCTAAACAAGCTCTTTGTGATGCCTTGTCTATT-GACAA 731
|||||||||||||| |||||||| ||||||||||||||||| ||||||||| || |||||
Sbjct 454 CTTCAGACAGATATTAACATGGCAAAACAAGCTCTTTGTGAGGCCTTGTCT-TTAGACAA 512
Query 732 ACCA 735
||||
Sbjct 513 ACCA 516
> Ahg919629 jgi|Araly1|919629|scaffold_100910.1
Length=934
Score = 294 bits (159), Expect = 1e-78
Identities = 309/378 (82%), Gaps = 23/378 (6%)
Strand=Plus/Plus
Query 184 GAGA-AGATAGAGATGGGAAGACCACCATGCTGTGACAAGAT-TGGAGTGAAGAAAGGAC 241
|||| ||| | ||||||| || || ||||||||||||||||| ||| | ||||||||||
Sbjct 8 GAGAGAGAGAAAGATGGGTAGGCCTCCATGCTGTGACAAGATAGGGA-TCAAGAAAGGAC 66
Query 242 CATGGACACCAGAGGAAGATATCA-TCTTGGTTTCTTACATCCAAGAACATGGTCCTGGA 300
||||||| || || |||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 67 CATGGACTCCTGAAGAAGATATCATTCTT-GTTTCTTACATCCAAGAACATGGTCCTGGA 125
Query 301 AACTGGAGATCTGTGCCTACTCAC-ACAGGTTTGAG-GAGATGTAGCAAAAGCTGTAGAT 358
|||||||||||||| || || || || || | | |||||| |||||||| ||||||
Sbjct 126 AACTGGAGATCTGTTCCCAC-CAATACTGGGCT-ACTGAGATGCAGCAAAAGTTGTAGAC 183
Query 359 TGAGGTGGACTAATTATCTTCGACCTGGGATCAAGCGTGGAAA-TTT-CACCGAGCATGA 416
| || ||||| |||||||| ||||||| || || |||||||| ||| | || |||||
Sbjct 184 TCAGATGGACAAATTATCTGAGACCTGGAATTAAACGTGGAAACTTTACTCCT--CATGA 241
Query 417 AGAGAAGA-TGATTC-TCCATCTT-CAAGCTCTT-TTGGGAAACAGGTGGGCAG-CTATA 471
||| | || |||| | | || ||| ||||| ||| ||||| |||| ||||| | | |||
Sbjct 242 AGA-AGGAATGAT-CATTCA-CTTGCAAGC-CTTATTGGGTAACAAATGGGC-GTCCATA 296
Query 472 GCATCATATCTTCCAGAAAGGACAGACAATGATATAAAGAACTATTGGAACACTCATTTG 531
|| |||||||| ||| |||| || ||||||||||| |||||||| |||||||| ||||||
Sbjct 297 GCTTCATATCTACCACAAAGAACGGACAATGATATCAAGAACTACTGGAACACACATTTG 356
Query 532 AAGAAAAAGCTCAAGAAG 549
||||| |||||||| |||
Sbjct 357 AAGAAGAAGCTCAACAAG 374
> Ahg484660 jgi|Araly1|484660|fgenesh2_kg.5__652__AT3G28910.1
Length=1465
Score = 268 bits (145), Expect = 6e-71
Identities = 275/337 (82%), Gaps = 11/337 (3%)
Strand=Plus/Plus
Query 226 GGAGTGAAGAAAGGACCATGGACACCAGAGGAAGATATCATCTTGGTTTCTTACATCCAA 285
|||||||||||||| || ||||| || || ||||||||||| || ||| |||||||||||
Sbjct 299 GGAGTGAAGAAAGGGCCTTGGACTCCTGAAGAAGATATCATTTTAGTTACTTACATCCAA 358
Query 286 GAACATGGTCCTGGAAACTGGAGATCTGTGCCTACTC-ACACAGG--T-TTGAGGAGATG 341
|||||||||||||| || |||||| |||| ||||| | | || || | ||| |||||
Sbjct 359 GAACATGGTCCTGGTAATTGGAGAGCTGTTCCTAC-CAATACTGGTATGTTGCTTAGATG 417
Query 342 TAGCAAAAGCTGTAGA-TTGAGGTGGACTAATTATCTT-CGACCTGGGATCAAGCGTGGA 399
||||| || |||||| || || ||||| || ||| || | || || ||||| | ||
Sbjct 418 CAGCAAGAGTTGTAGACTT-AGATGGACAAACTAT-TTAAGGCCAGGAATCAAAAGAGGC 475
Query 400 AATTTCACCGAGCATGAAGAGAAGATGATTCTCCATCTTCAAGCTCTTTTGGGAAACAGG 459
|||||||| || |||||||| ||||||||| | ||||||||||| || || ||||| ||
Sbjct 476 AATTTCACTGAACATGAAGAAAAGATGATTGTTCATCTTCAAGCCCTCTTAGGAAATAGA 535
Query 460 TGGGCAGCTATAGCATCATATCTTCCAGAAAGGACAGACAATGATATAAAGAACTATTGG 519
||||| || || || |||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 536 TGGGCTGCAATTGCGTCATATCTTCCACAAAGGACAGACAATGACATTAAGAACTATTGG 595
Query 520 AACACTCATTTGAAGAA-AAAGCTCAAGAAGATGAAT 555
||||||||||||||||| ||| ||||| || || |||
Sbjct 596 AACACTCATTTGAAGAAGAAA-CTCAACAAAATTAAT 631
> Ahg336488 jgi|Araly1|336488|fgenesh1_pg.C_scaffold_1003053
Length=486
Score = 213 bits (115), Expect = 3e-54
Identities = 127/133 (95%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 196 ATGGGAAGACCACCATGCTGTGACAAGATTGGAGTGAAGAAAGGACCATGGACACCAGAG 255
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGACCATGGACACCAGAG 60
Query 256 GAAGATATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTG 315
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTC 120
Query 316 CCTACTCACACAG 328
|| ||| ||||||
Sbjct 121 CCAACTAACACAG 133
> Ahg488379 jgi|Araly1|488379|fgenesh2_kg.6__1513__AT5G15310.1
Length=1310
Score = 128 bits (69), Expect = 1e-28
Identities = 263/354 (74%), Gaps = 24/354 (7%)
Strand=Plus/Plus
Query 196 ATGGGAAGACCACCATGCTGTGACAAGATT-GGAGTGAAGAAAGGACCATGGACACCAGA 254
||||| ||| |||| ||||||||||| ||| || ||||||||||||| |||||||||||
Sbjct 223 ATGGGTAGATCACCGTGCTGTGACAA-ATTGGGTTTGAAGAAAGGACCTTGGACACCAGA 281
Query 255 GGAAGAT-ATCATCTTGGTT-TCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATC- 311
|| ||| | | ||| || |||| || |||| ||||||| ||||| ||| | ||
Sbjct 282 AGAGGATCAGAAACTT--TTAGCTTATATTGAAGAGCATGGTCATGGAAGTTGGCGTTCA 339
Query 312 TGTGCCTACTCACA-CAGGT-TTGAGGAGATGTAGCAAAAGCTGTAGATTGAGGTGGACT 369
| ||||| | | | ||| || | |||| | ||||| || ||| | || ||||||
Sbjct 340 T-TGCCT-GAGAAAGCTGGTCTTCA-TCGATGCGGGAAAAGTTGCAGACTAAGATGGACT 396
Query 370 AATTATCTTCGACCTGGGATCAAGCGTGG-AAATTTCACCGAGCATGAAG-AGAAGA-TG 426
|| || || |||||| ||||| | || ||| |||| | ||| |||| | || | |
Sbjct 397 AACTACCTAAGACCTGACATCAAAAGAGGCAAA-TTCAACTTGCAAGAAGAACAA-ACT- 453
Query 427 ATTCTCCATCTTCAAGCTCTTTTGGGAAACAGGTGGGCAGCTATAGC-A-TCATATCTTC 484
||| |||| || || ||||| || |||||||| ||| |||| || || | |||| | | |
Sbjct 454 ATTATCCAACTCCATGCTCTGTTAGGAAACAGATGGTCAGCGATTGCTACTCAT-T-TGC 511
Query 485 CAGAA-AGGACAGACAATGATATAAAGAACTATTGGAACACTCATTTGAAGAAA 537
| || || |||||||| || || ||||||||||||||||||||||||||||||
Sbjct 512 C-TAAGAGAACAGACAACGAAATCAAGAACTATTGGAACACTCATTTGAAGAAA 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55611757700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5