BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47610.1
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485125 jgi|Araly1|485125|fgenesh2_kg.5__1117__AT3G47610.1 2331 0.0
> Ahg485125 jgi|Araly1|485125|fgenesh2_kg.5__1117__AT3G47610.1
Length=1491
Score = 2331 bits (1262), Expect = 0.0
Identities = 1423/1500 (95%), Gaps = 14/1500 (1%)
Strand=Plus/Plus
Query 6 CTTGTCGTCGTTTCGAAGAGACTAAAGGCGACGGAGAGAATCGGAGAAGAAGATGGGAAC 65
||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1 CTTGTGGTCGTTTCGAAGAGACTAAAGGCGAC-G-GAGAATCGGAGAAGAAGATGGGAAC 58
Query 66 GGCGGTGGGACAGTGGCTAGAGGAAGCGCTTGTTGAC-CTCTGCCGCAAACCAGAGACCG 124
||||||||||||||||||||| |||||||| |||| | |||||||| |||||||||||||
Sbjct 59 GGCGGTGGGACAGTGGCTAGAAGAAGCGCTGGTTG-CTCTCTGCCGGAAACCAGAGACCG 117
Query 125 GTTTGAATTTCGATCGTGATGTCATCTCCGGTTTAGTCTCCTATTGCGATCTTGCTCAGC 184
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GTTTGAATTTTGATCGTGATGTCATCTCCGGTTTAGTCTCCTATTGCGATCTTGCTCAGC 177
Query 185 CTGTCGATGCCAAGGAATATCTCGACAATATTATTGGAAAAGAAGGCAAAAGCATCATTG 244
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 178 CTGTCGATGCCAAGGAATATCTCGACAATATTATTGGGAAAGAAGGCAAAACCATCATTG 237
Query 245 CAGAATATCTACAGCGAAGAGGATACAAAGATCCATCTAGCCATGTAGCAGCCAGTTCAG 304
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 238 CAGAATATCTACAGCGAAGAGGATACAAAGATCCATCTAGCCATGTAGCAAACAGTTCAG 297
Query 305 GTCCAGAACTGCAAATGTATGTTAAGCCAAAAGTGGATAATGGTGCTTCTAGTGGAACCA 364
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GTCCAGAACTGCAGATGTATGTTAAGCCAAAAGTGGATAATGGTGCTTCTAGTGGAACCA 357
Query 365 AGAAACCGTTTAAAACACCAAAAGAGGGAACATCTTCTAATCAGCAAGCTGGAACTGGGA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGAAACCGTTTAAAACACCAAAAGAGGGAACATCTTCTAATCAGCAAGCTGGAACTGGGA 417
Query 425 AATTAACAGCTCCCGCCCAGCAAGTTAATCCTAAGAAGAAAAAAGGTGGAAAGGTGATTT 484
|| | |||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 418 AAGTGACAGCTCCGGCCCAGCAAGTCAATCCTAAAAAGAAAAAAGGTGGAAAAGTGATTT 477
Query 485 CTCTTGCCGAAGCAGCTAAAGGATCAATAGTGTTTCAGCAAGGAAAACCGTGTGCATGCC 544
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 478 CTCTTGCAGAAGCAGCTAAAGGATCAATAGTGTTTCAGCAAGGAAAACCATGTGCATGTC 537
Query 545 AAGCTCGTAGACACCACTTAGTGAGCAACTGCTTGTCGTGTGGGAAAATAGTGTGCGAAC 604
|||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 538 AAGCTCGTAGACACAAATTAGTGAGCAACTGCTTGTCGTGTGGGAAAATAGTGTGTGAAC 597
Query 605 AAGAAGGAGAAGGGCCTTGCAGTTTTTGCGGAGCACTTGTGCTGAAAGAAGGAAGTACAT 664
||||||||||||||||||||||||| ||||||||||||||||| |||||| | |||||||
Sbjct 598 AAGAAGGAGAAGGGCCTTGCAGTTTCTGCGGAGCACTTGTGCTAAAAGAAAGCAGTACAT 657
Query 665 ATGCTGGGCTAGAGGTAGGGTATACTCCAGTATCTGATGCTGATGTGGCAGCTGAAGCAT 724
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 658 ATGCTGGGCTAGAGGAAGGGTATGCTCCAGTATCTGATGCTGATGTGGCAGCTGAAGCAT 717
Query 725 ATGCGAAAAGGCTTGTAGAGTATGATAGAAATTCGGCCGCACGTACAACGGTTATTGATG 784
||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct 718 ATGCGAAAAGGCTTGTAGAGTATGATAGAAACTCAGCTGCACGTACAACAGTTATTGATG 777
Query 785 ACCAAAGCGATTACTATGAATCTGAGAGCAGTACTTGGCTCTCTGCGGAGGAAAAAGAGC 844
|||| || |||||||||||| |||||| |||| ||||||||||||||||||||||||||
Sbjct 778 ACCAGAGTGATTACTATGAAAGTGAGAGTAGTAGTTGGCTCTCTGCGGAGGAAAAAGAGC 837
Query 845 TAGTGAGGAAGAAGCGAGAGGAGATTGAAGAAGCTGAACGAGTAAAAAAGAGCAAAGTGG 904
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 838 TCGTGAGGAAGAAGCGAGAGGAGATTGAAGAAGCTGAACGAGTCAAAAAGAGCAAAGTGG 897
Query 905 TTATGACATTTGATTTAATCGGCCGTAAGGTTCTGTTAAATGAAGATGATATCTCAGAAC 964
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 898 TTATGACATTTGATTTAGTCGGTCGTAAGGTTCTGTTAAATGAAGATGATATCTCAGAAC 957
Query 965 TAGAATCAGGGAACAGGATTCTGGGACCACCTGAGACTAAAAACGTGAACAGAATAAAAC 1024
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 958 TAGAATCAGGGAACAGGATTCTTGGACCACCTGAGACTAAAAACGTGAACAGAATAAAAC 1017
Query 1025 CGAACCCGACTGCAAGACTCGTTCCAATCTTCTTAGACCCAGGACCAACCGAGAAGAAGC 1084
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1018 CGAACCCGACTGCAAAACTCGTTCCAATCTTCTTAGACCCGGGACCAACCGAGAAGAAGC 1077
Query 1085 CAAACAGCACCACCACCAAGAAAGACAACAAGAAAAACCGAAACGGTTTGTGTCTAGAGA 1144
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1078 CAAACAGCACCACCACCAAGAAAGACAACAAAAAAAACCGAAACGGATTGTGTCTAGAGA 1137
Query 1145 TCACAGGAAGGGTGCAACATGACAGAAGTGAACTCAAATACTTACAAGCCGATCCAAAAT 1204
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1138 TCACAGGAAGGGTACAACATGACAGAAGTGAACTCAAGTACTTACAAGCCGATCCAAAAT 1197
Query 1205 CGGACGGTAAATCTTGGCCATCAGGAAACGATGGACTTCATGTAGAAGATGGTGGTGAAT 1264
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1198 CGGACGGTAAATCTTGGCCATCAGGAAACGAAGGGCTTCATGTAGAAGATGGTGGTGAAT 1257
Query 1265 GTTCCTTAGATTACGACT-AAATATTTTTCAGTAACCAAACCCGGTTCAATGTTTTCGGT 1323
|||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| ||||
Sbjct 1258 GTTCCTTAGATTACGACTGAAAT-TTTTTCAGTAACCAAACCCGGTTAAATGTTTCCGGT 1316
Query 1324 TTACCGAACCTGATACTA-T-TT-GTTCAGTTTAAAAGTCAACAACTTTTCTCTTGTTGA 1380
|||||||||| ||||||| | || ||||||||||||||||||||| |||||||| |||||
Sbjct 1317 TTACCGAACCGGATACTACTATTTGTTCAGTTTAAAAGTCAACAATTTTTCTCTAGTTGA 1376
Query 1381 GTCCACGTCGGATGGTTTTTTGATACGCCGTCGGTCAAGAATCACGTGTTTGGAACTTTG 1440
||||||||||||| ||| |||| |||||||||||||||||||||||| |||| ||||
Sbjct 1377 GTCCACGTCGGATTGTT----GATA-GCCGTCGGTCAAGAATCACGTGTTCGGAATTTTG 1431
Query 1441 GGTCTCTCATGTGATTACGTGGCGTTATGTAATTGGGTAATGTTAAATTCTCTCGGTTTT 1500
||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1432 GGTTTCTCGTGTGCTTACGTGGCGTTATGTAATTGAGTAATGTTAAATTCTCTCGGTTTT 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56145021130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5