BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47620.1
Length=1919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485126 jgi|Araly1|485126|fgenesh2_kg.5__1118__AT3G47620.1 2422 0.0
> Ahg485126 jgi|Araly1|485126|fgenesh2_kg.5__1118__AT3G47620.1
Length=1855
Score = 2422 bits (1311), Expect = 0.0
Identities = 1709/1881 (91%), Gaps = 108/1881 (6%)
Strand=Plus/Plus
Query 76 aaaacatcacatataaataaaaaaccaaaaaccctaatttataaaatatatataaaatag 135
|||| ||||||||||||| ||||||| ||||||||||||||||||| | |||||||||||
Sbjct 41 AAAAAATCACATATAAAT-AAAAACC-AAAACCCTAATTTATAAAA-ACATATAAAATAG 97
Query 136 ttatagctccccacttatatatGCAAAAGCCAACATCAAGTATCTTAAATGTCATAATGG 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 TTATAGCTCCCCACTTATATATGCAAAAGCCAACATCAAGTATCTTAAATGTCATAATGG 157
Query 196 ACGGTGGAGACAGCGTC------GGAGGAGGAGGAGGAGATGATCACCACCGTCACCTCC 249
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 158 ACGGTGGAGACAGCGTCGGAGGAGGAGGAGGAGGAGGAGACGATCACCACCGTCACCTCC 217
Query 250 ACCATCACCACCGCCCTACTTTCCCTTTTCAACTACTCGGAAAACACGACCCCGACGACA 309
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 218 ACCATCACCACCGCCCTACTTTCCCTTTCCAACTCCTCGGAAAACACGACCCCGACGACA 277
Query 310 ACCAT------CAACAACAACCTTCCCCTTCCTCCTCCTCCTCTCTATTTTCTCTCCATC 363
||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 278 ACCATCAACAACAACAACAACCTTCCCCTTCCTCCTCCTCTTCTCTCTTTTCTCTCCATC 337
Query 364 AACACCAACAATTATCTCAATCGCAACCTCAATC-GCAAT--C-GCAAAAGTCACAACCG 419
|||||||||||||||||||||| ||||| ||| | ||||| | ||||||| ||||||||
Sbjct 338 AACACCAACAATTATCTCAATCACAACCCCAA-CAGCAATCGCAGCAAAAGCCACAACCG 396
Query 420 CAGACAACGCAAAAAGAGTTATTACAAACGCAAGAGGAAT---CTGCGGTGGTGGCAGCT 476
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 397 CAGACAACTCAAAAAGAGTTATTACAAACGCAAGAGGAATCAGCAGCGGTGGTGGCAGCT 456
Query 477 AAAAAGCCACCGTTGAAACGAGCGTCGACGAAAGACCGACACACGAAAGTAGACGGAAGA 536
|| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 457 AAGAAGCCGCCGTTGAAACGAGCGTCGACTAAAGACCGACACACAAAAGTAGACGGAAGA 516
Query 537 GGGAGGAGAATAAGGATGCCGGCGTTATGTGCAGCTAGGGTTTTTCAGCTAACGCGAGAG 596
|| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 517 GGAAGGAGGATAAGGATGCCGGCGTTATGTGCAGCTAGGGTTTTTCAGCTGACAAGAGAG 576
Query 597 CTAGGTCATAAATCCGACGGTGAGACAATAGAGTGGCTTCTTCAACAAGCTGAACCATCT 656
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 CTTGGTCATAAATCCGACGGTGAGACAATAGAGTGGCTTCTTCAACAAGCTGAACCATCA 636
Query 657 GTAATCGCCGCCACCGGAACCGGAACAATCCCGGCGAATTTCACTTCTTTAAACATCTCT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GTAATCGCCGCCACCGGAACCGGAACAATCCCGGCGAATTTCACTTCTTTAAACATCTCT 696
Query 717 CTCCGTTCTTCAGGCTCTTCCATGTCTCTTCCTTCTCATTTCCGCTCCGCCGCTTCCACT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CTCCGTTCTTCAGGCTCTTCCATGTCTCTTCCTTCTCATTTCCGCTCCGCCGCTTCCACT 756
Query 777 TTTAGCCCTAATAACATATTTTCTCCGGCGATGCTTcaacaacaacaacaacaacaacGT 836
||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 757 TTTAGCCCTAATAACATGTTTTCTCCGGCGATGCTTCAACAACAACAACAACGA----G- 811
Query 837 GGTGGTGGTGTTGGGTTTCATCATCCCCATCTACAGGGACGTGCACCTACGTCGTCTTTG 896
| |||||||| || ||||| ||||| |||||||| ||||||||| | || |||||||||
Sbjct 812 G-TGGTGGTG--GG-TTTCACCATCCTCATCTACAAGGACGTGCAACGACATCGTCTTTG 867
Query 897 TTTCCTGGTATTGATAACTTCACACCAACGACGTCGTTTTTGAACTTTCATAATCCAACA 956
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 868 TTTCCTGGTATTGATAACTTCACACCAACGACGTCATTTTTGAACTTCCATAATCCGACA 927
Query 957 AAGCAAGAAGGAGATCAAGATTCTGAAGAGTTAAACTCGGAGAAGAAAAGAAGAATCCAA 1016
||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct 928 AAGCAAGAAGGAGATCAAGATTCAGAAGAGTTAAACTCAGAGAAGAAAAGAAGACTCCAA 987
Query 1017 ACGACGTCGGATTTGCATcaacaacaacaacaacaccaacaTGATCAAATCGGAGGATAT 1076
|||||||||||||||||||||||||| | ||||| |||||||||||||||||||
Sbjct 988 ACGACGTCGGATTTGCATCAACAACA-C--CAACA------TGATCAAATCGGAGGATAT 1038
Query 1077 ACACTTCAATCTAGCAACAGTGGATCTACAGCCACCGCAGCCGCCGCGCAACAAATACCG 1136
|| |||||||||||||||||||||||||| |||||||| | || | | |||||||||
Sbjct 1039 ACTCTTCAATCTAGCAACAGTGGATCTACCGCCACCGC--C-GCT-C--AGCAAATACCG 1092
Query 1137 GGAAATTTCTGGATGGTTGCGGCGGCTGCGGCTGCAGGTGGTGGTGGTGGTAATAACAAC 1196
||||||||||||||||||||||||| | || | ||||||| |||||||||
Sbjct 1093 GGAAATTTCTGGATGGTTGCGGCGG--G----TG--G-TGGTGGT------AATAACAAC 1137
Query 1197 CAAACAGGTGGTCTTATGACAGCTTCTATTGGTA-C--TGG---TGGC-G-G-CGGTGGA 1247
|||||||||||||||||||||||||||||||||| | ||| |||| | | |||||||
Sbjct 1138 CAAACAGGTGGTCTTATGACAGCTTCTATTGGTAGCGGTGGAGGTGGCAGCGGCGGTGGA 1197
Query 1248 GAGCCTGTTTGGACGTTTCCTTCCATTAACACGGCAGCGGCAGCGTTATATAGAAGTGGC 1307
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 1198 GAGCCTGTTTGGACGTTTCCTTCCATTAACACTGCGGCGGCAGCGTTATACAGAAGTGGC 1257
Query 1308 GTTTCGGGCGTTCCAAGCGGCGCGGTTTCTAGCGGTTTACATTTTATGAATTTCGCAGCG 1367
|||||||||||| || ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1258 GTTTCGGGCGTTTCAGGCGGCGCAGTTTCGAGCGGTTTACATTTTATGAATTTCGCAGCG 1317
Query 1368 CCAATGGCATTTCTTACTGGACAACAACAGCTAGCAACAACTAGTAATCATGAGATTAAT 1427
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CCAATGGCATTTCTTACCGGACAACAACAGCTAGCAACAACTAGTAATCATGAGATTAAT 1377
Query 1428 GAAGATAGTAATAATAATGAAGGAGGAAGAAGTGACGGTGGTGGTGatcatcataataca 1487
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GAAGATAATAATAATAATGAAGGAGGAAGAAGTGACGGTGGTGGTGATCATCATAATACA 1437
Query 1488 cagagacatcatcatcatcaacaacaaca---tcatcatAATATTCTCTCCGGCTTGAAC 1544
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1438 CAGAGACATCATCATCATCAACAACAACAACATCATCATAATATTCTCTCCGGTTTGAAT 1497
Query 1545 CAGTACGGACGGCAAGTTTCCGGCGACTCTCAAGCTAGTGGATCACTTGGAGGTGGTGAT 1604
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1498 CAGTACGGACGGCAAGTTTCCGGTGAATCTCAAGCTAGTGGATCACTTGGAGGTGGTGAT 1557
Query 1605 GAGGAGGATCAGCAAGATTAGACACACACAAAAA--CATTTTAACGGTGGGATTTTCTGC 1662
||||| |||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1558 GAGGACGATCCGCAAGATTAGACACACACAAAAAAACAATTTAACGGTGGGATTTTCTGC 1617
Query 1663 CGACGGCGGTAGCGGTGACGGCGTTCGGCGGCTGTGTAAAACttttgttttcaccgttaa 1722
|| ||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1618 CGGCGGCGGTGGCGGTGACGGCGTTCGGCGGCTGTGTAATACTTTTGTTTTCGCCGTTAA 1677
Query 1723 ttttttttattttctgtagtaattttttttGCTAAGTaaaaaaaaaaaaaaaaaCACGTG 1782
|||||| |||||||||||||| | ||| |||| |||| ||||||
Sbjct 1678 TTTTTT--ATTTTCTGTAGTAA--------G-TAA--AAAACAAAA--------CACGTG 1716
Query 1783 AGattttctttttaattttgattttttt--------actt-gattttaaatttgattttt 1833
||||||| |||||| ||||||||||||| |||| ||||| |||||||||||||
Sbjct 1717 AGATTTT-TTTTTAGTTTTGATTTTTTTTTTTGTTTACTTTGATTT-AAATTTGATTTTT 1774
Query 1834 CTTGTGAGTGAGTGATTAAATAGTACACGAGAttttttatgtcaggttttttggattttg 1893
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1775 CTTGTGAGTGAGTGATTAAATAGTACACGAGATTTTTTATGTCAGGTTTTATGGATTTTG 1834
Query 1894 aggagaatatgacactttttt 1914
|||||||||||||||||||||
Sbjct 1835 AGGAGAATATGACACTTTTTT 1855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72104833785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5