BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47630.2
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485127 jgi|Araly1|485127|fgenesh2_kg.5__1119__AT3G47630.2 1679 0.0
Ahg896500 jgi|Araly1|896500|Al_scaffold_0005_466 167 2e-40
> Ahg485127 jgi|Araly1|485127|fgenesh2_kg.5__1119__AT3G47630.2
Length=1247
Score = 1679 bits (909), Expect = 0.0
Identities = 1132/1236 (92%), Gaps = 30/1236 (2%)
Strand=Plus/Plus
Query 11 AAGCTTCTTCAATTCCCCTCTTAAATCAACTAACGCTTCCTAATTCCTCCTCTGGCT-TC 69
|||||||||||||| ||||||||||||| |||| ||| | |||||||||||| || ||
Sbjct 1 AAGCTTCTTCAATTGTCCTCTTAAATCAA-TAACACTTTCGAATTCCTCCTCTTTCTCTC 59
Query 70 GTTCCTCTCC-T-TTTTTCCAAGGTC---TGCCCAGTTGA-ATACATTACAAGGGTTA-- 121
|| | ||| | ||| || || | | || || | || | || ||||| ||
Sbjct 60 -TT--TTTCCATGGTTTGGGAA-ATCAAATACGCA-TT-ACATTTAGTAAAAGGG-TACT 112
Query 122 TTTTTGTCTGAATGGAAACTACTCAAAAAGATGAGCTTTCGAGCTTCTTAAGTGTTCTTC 181
|||||| | ||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 113 TTTTTG-GT-AATGGAAACTACTCAAAGAGATGAGCTTTCGAGCTTCTTAGGTGTTCTTC 170
Query 182 CTCCTGTGGATTTCTGTTGTGTTTATGGTTCAACATTGCACCCAAATAACCAAGATAAGT 241
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 171 CTCCTGTGGATTTCTGTTGTGTTTATGGTTCCACATTGCATCCAAATAACCAAGATAAGT 230
Query 242 CTAAGATGGTGGACTATATCCTTGGAGTCTCTGATCCTATAAAATGGCATTCTGC-GAAT 300
|||| ||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||
Sbjct 231 CTAAAATGGTGGACTATATCCTTGGAGTCTCTGATCCTATGCAATGGCACTCT-CTGAAT 289
Query 301 CTGAAAATGAATTCAGATCACTATGCTTCATGGATGGTTCACCTTGGTGGAGCTAGGCTG 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 290 CTGAAAATGAATTCAGATCACTATGCTTCGTGGATGGTTCACCTTGGTGGAGCCAGGCTG 349
Query 361 ATTACAAATGTTGCCGATAAAGTAGGAGTTGGAGTTCACTTCAATCCGTTTGTCAACTGG 420
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 350 ATTACAAATGTTGCCCATAAAGTAGGAGTTGGAGTTCACTTCAATCCGTTTGTCAATTGG 409
Query 421 AACGACAGGAAGCTCAAGTATGGAGTTGTTCGGATGCATGACCTAGTACAGGACATACTG 480
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 410 AACGACAGGAAGCTCAAGTATGGGGTTGTTCGGATGCATGACCTAGTACAGGACATACTA 469
Query 481 GACTGGAAGAGGTTCTACTTGAGTGGCCGTTTACAAAAACCTGTTCATATGCTTGTTGAT 540
|||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 470 GACTGGAATAGATTCTACTTGAGTGGCCGTTTACAGAAACCGGTTCATATGCTTGTTGAT 529
Query 541 AATCTGGACATAGAGGATGTGAATTCTGTTAATAAGAGAGCTGCAATATCTGCAGCTCTT 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 530 AATCTGGACATAGAGGATGTGAATTCTGTTAATAAGAGAGCTGCAGTATCTGCTGCTCTT 589
Query 601 CTTCTCTTGCCATCGAAATTCACCGAGGAAGATCTATACGCCAAAATATGCAGCCTTTCT 660
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 590 CTTCTCTTACCATCAAAATTCACCGAGGAAGATCTATATGCCAAAATATGCAGCCTTTCT 649
Query 661 TACATGGGAGACTTGCGCATGTTTTTTGCAGAGGACACTAATAAGGTGAACAAGATTGTG 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 TACATGGGAGACTTGCGCATGTTTTTTGCAGAGGACACTAATAAGGTGAACAAGATTGTA 709
Query 721 AAGGGACAATTTGATCTTTTCCAGTCGATGTATAAGCCTTTTCTTGAAGAGTGCGAGACC 780
||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 710 AAGGGACAATTTGATATTTTCCAGTCAATGTATAAGCCTTTTCTTAAAGAGTGCGAGACC 769
Query 781 AAAAACTTATTGAGATTCTCATCGGCTGAAGCTAGTCACACTAAATTAGTTCAGGATTCT 840
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 770 AAAAACTTATTGAGATTCTCATCTGCTGAAGCTAGTCACACTAAATTAGTGCAGGATTCT 829
Query 841 AGCCTTTCAGCAACACGTTCTCTGGTCTCTTCTCTTCCTGCATCAGTGAGAAGCCAAATG 900
||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 830 AGCCTGTCAGCAACACGTTCTCTGGTCTCTTCTCTTCCCGCATCAGTGAGAAGCCTAATG 889
Query 901 GGGAAGTCACTCGGGGAGAAGAAATTCGTGAGCGAGACCGGTAGAGTTATGGGAGAAGTT 960
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 890 GGGAAGTCACTCGGGGAGAAGAAATTCGTGAGTGAGACAGGTAGAGTTATGGGAGAAGTT 949
Query 961 TGTATAAGTTCGAGAGAAGAAGCAGCGAAATGTATGGAGAAAGTCATGAGGAGAAGGGTA 1020
|||||| ||||||||||||||||||||| |||||||| ||| || |||| | ||||||||
Sbjct 950 TGTATAGGTTCGAGAGAAGAAGCAGCGAGATGTATGGGGAATGTAATGAAGCGAAGGGTA 1009
Query 1021 ATGGTTTCAAGCGGAAGACAAGCTGTGTCTGGTTTCTTGGCTGCAGGAGCTATTAATGCA 1080
||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1010 ATGGTTTCAAGCGCAAGACAAGCTGTGTCTGGTTTCTTGGCTGCTGGAGCTATCAATGCA 1069
Query 1081 ACAATGTATCTTTCCCAAAAAATGCGCAAAGCTTGGAACTCTCGTGCATGA---CTTTGC 1137
|||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||
Sbjct 1070 ACAATGTATCTTTCCCAAAAAATGCGTAAAGCTTGGAACTCTCGGGCATGAAGACTTTGC 1129
Query 1138 CAAAACTCCCCATGAAAGTTTAGATGAACAAG--GA--AA-GTTTACAATAGTTGATCAt 1192
||||||||| | ||| ||||||||||||||| || || |||| ||||| ||||||||
Sbjct 1130 AAAAACTCCCTACGAAGGTTTAGATGAACAAGTTGAGGAAAGTTTCCAATAATTGATCAT 1189
Query 1193 tcttttcttttctt-tttctaagtaacaagtttttt 1227
|||||| |||| || |||||||||||||||||||||
Sbjct 1190 TCTTTTTTTTTTTTGTTTCTAAGTAACAAGTTTTTT 1225
> Ahg896500 jgi|Araly1|896500|Al_scaffold_0005_466
Length=237
Score = 167 bits (90), Expect = 2e-40
Identities = 111/121 (92%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 307 ATGAATTCAGATCACTATGCTTCATGGATGGTTCACCTTGGTGGAGCTAGGCTGATTACA 366
||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 1 ATGAATTCAGATCACTATGCTTCATGGATCGTTCACCTTGGTGGAGCCATGCTGATTACA 60
Query 367 AATGTTGCCGATAAAGTAGGAGTTGGAGTTCACTTCAATCCGTTTGTCAACTGGAACGAC 426
||||||| |||| ||||||||||| ||||||||||||||| |||||||| || ||||||
Sbjct 61 AATGTTGAAGATAGAGTAGGAGTTG-AGTTCACTTCAATCCATTTGTCAATTGAAACGAC 119
Query 427 A 427
|
Sbjct 120 A 120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50093512938
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5