BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47640.1
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485129 jgi|Araly1|485129|fgenesh2_kg.5__1121__AT3G47640.1 1459 0.0
> Ahg485129 jgi|Araly1|485129|fgenesh2_kg.5__1121__AT3G47640.1
Length=1042
Score = 1459 bits (790), Expect = 0.0
Identities = 977/1062 (92%), Gaps = 34/1062 (3%)
Strand=Plus/Plus
Query 27 TTATTTCTTCTACTCGTTTCGAATCCTAATCGTCTACAGTTTCCGACGAGATTCTCACCG 86
||||||||||| |||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 1 TTATTTCTTCTCCTCGTTTCGAATCCTAATTGTCTTCAATTTCCGACGAGATTCTCACCG 60
Query 87 GAGAAAGAAAGGTGACTTGACAGAGAATCTTGTTC-TGTAATAAAAGC-AAAGATGGTAT 144
|||||||| |||||||||||||||||||||||||| | ||| |||||| |||||||| ||
Sbjct 61 GAGAAAGACAGGTGACTTGACAGAGAATCTTGTTCTTTTAACAAAAGCAAAAGATGGCAT 120
Query 145 CGAAAACTCCTTCTACATCGTCTGATGAAGCAAATGCTACTGCAGATGAAAGATGTAGAA 204
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGAAAACTCCTTCCACATCGTCTGATGAAGCAAATGCTACTGCAGATGAAAGATGTAGAA 180
Query 205 AAGGTAAAGTACCGAAAAGGATCAACAAGGCCGTTCGTGAGAGGCTTAAGCGTGAGCATT 264
||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 181 AAGGTAAAGTACCTAAAAGGATTAACAAGGCTGTTCGTGAGAGGCTTAAGCGCGAGCATT 240
Query 265 TGAATGAGCTTTTCATTGAATTAGCCGATACTCTTGAACTGAATCAACAGAACAGTGGGA 324
|||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 241 TGAATGAGCTTTTCATCGAATTAGCTGATACTCTTGAACTGAATCAACAGAATAGTGGGA 300
Query 325 AAGCTTCTATACTATGCGAAGCTACTCGATTCTTGAAGGACGTGTTTGGTCAAATTGAGT 384
||||||| |||||||||||||||||||| || ||||| ||||||||||||||||| ||||
Sbjct 301 AAGCTTCCATACTATGCGAAGCTACTCGGTTTTTGAAAGACGTGTTTGGTCAAATCGAGT 360
Query 385 CTCTTAGAAAGGAGCATGCTTCTCTCCTATCTGAATCTAGCTATGTAACCACAGAGAAGA 444
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 361 CTCTTAGAAAGGAGCACGCTTCTCTCCTCTCTGAATCTAGCTATGTAACGACAGAGAAGA 420
Query 445 ATGAGCTCAAGGAAGAAACATCAGTGCTTGAGACTGAGATTTCGAAACTACAAAACGAGA 504
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 ATGAGCTCAAGGAAGAAACATCAGTGCTTGAGACTGAGATCTCGAAACTACAAAACGAGA 480
Query 505 TTGAAGCTAGAGCGAA-TCAGTCGAAACCTGACTTGAACACCTCTCCTGCACCCGAGTAC 563
| |||| |||| || ||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct 481 TAAAAGCAAGAGA-AAGTCAATCGAAACCCGACTTGAACACCTCTCCTGCATCCGAGTAC 539
Query 564 CATCATCATCATTATCAACAACAACATCCTGAACGTGTATCTCAGTTCCCAGGACTTCCC 623
|||||||||||| || || |||||||| || ||||||||||||||||||||||
Sbjct 540 CATCATCATCAT---CAGCA------TCCTGAACTTGCATCTCAGTTCCCAGGACTTCCC 590
Query 624 ATTTTCCAAGGCCCCGGCTTTCAACAATCTGCTACAAC-TCTTCATCCTCCTGCAACAGT 682
||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||||
Sbjct 591 ATTTTCCAAGGCCCCGGCTTTCAACAATCTGCTGCAACGT-TTCCTCCTCCTGCAACAGT 649
Query 683 TCTTGTCCTTCCAATACAACCTGATCCCCAGACACAAGATATCTCAGAAATGACTCAAGC 742
||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 650 TCTTGCCCTTCCTATACAACCTGATCTCCAGACACAAGATATCTCAGAAATGACACAAGC 709
Query 743 GCAGCAGCCTTTGATGTTTAATAGCTCAAATGTGAGTAAGCCATGTCCAAGGTATGCTAG 802
||||| | || ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 710 GCAGCCG--TT-GATGTATAATACCTCAAATGTGAGTAAGCCATGTCCAAGGTATGCTAG 766
Query 803 CGCGGCTGACTCGTGGTCTTCTCGGCTACTTGGAGAGCGGCTGAAAGCCAGTGAATGAGG 862
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TGCGGCTGACTCGTGGTCTTCTCGGCTACTTGGAGAGCGGCTGAAAGCCAGTGAATGAGG 826
Query 863 TCTTGAACGGCTCCACATGGAGTAGCAACGCAAGTTATAAGACATGGCAAC---TTATGA 919
|||||| |||||||||||||||||||||| ||||||| | ||||||||||| ||||||
Sbjct 827 TCTTGAGCGGCTCCACATGGAGTAGCAACACAAGTTA-A-GACATGGCAACAACTTATGA 884
Query 920 AGGACTCTGGTTTTGTATTTTTTAATACATCGTTCTGATGTCCTTGTGGGTTTGGCCTTG 979
||||| |||||||| ||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 885 AGGACCCTGGTTTTTTATTTTTTA---CATCGT-CTGATGTCCTTGTGGGTTTGGCCTTG 940
Query 980 GCTATTTCTTGTTTTTGATG-G-TTGTTCATAGGATCAGGAAGTTATGGCCTTGA-T--- 1033
|| ||||||||||||||||| | |||||||||||||||||||||||||||||| | |
Sbjct 941 GCCATTTCTTGTTTTTGATGTGGTTGTTCATAGGATCAGGAAGTTATGGCCTTTACTTTA 1000
Query 1034 -GGGTCGTTTGAGATAAATAAGTAAATTAGCTCTAACCATTG 1074
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 TGGGTCGTTTGAGATAAATAAGTAAATTAGCTCTAACCATTG 1042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39990939933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5