BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47660.1
Length=2865
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485131 jgi|Araly1|485131|fgenesh2_kg.5__1123__AT3G47660.1 4252 0.0
> Ahg485131 jgi|Araly1|485131|fgenesh2_kg.5__1123__AT3G47660.1
Length=2889
Score = 4252 bits (2302), Expect = 0.0
Identities = 2655/2825 (94%), Gaps = 25/2825 (1%)
Strand=Plus/Plus
Query 58 GCGATAGCAATTCTGAAGAAAGGGGCTTATCTTTTGAAATACGGCCGCCGTGGGAAGCCT 117
|||||||| ||||| |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 73 GCGATAGCGATTCTCAAGAAAGGAGCTTATCTATTGAAATACGGCCGTCGTGGGAAGCCT 132
Query 118 AAATTCTACCCTTTTCGGCTTTCAAGTGATGAAATATATTTGTTATGGTATTGTGGTAAA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 AAATTCTACCCTTTTCGGCTTTCAAGTGATGAAATATATTTGTTATGGTATTGTGGTAAA 192
Query 178 AAGGAGAAACGTCTTAAACTGAGTTCTGTGACAAGGATCATACCTGGACAGCGAACTGCG 237
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 193 AAGGAGAAACGTCTTAAGCTGAGTTCTGTGACAAGGATCATACCTGGACAGCGAACTGCA 252
Query 238 GTTTTCCGACGATATCCTCAACCCACCAAGGAATATCAATCCTTTTCTCTTATATATGGC 297
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GTTTTCCGACGATACCCTCAACCCACCAAGGAATATCAATCCTTTTCTCTTATATATGGC 312
Query 298 GAACGGTCTCTCGATTTGGACAAGGATGAAGCTGAGTTCTGGCTCACTACCCTTCGCGCT 357
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 313 GAACGGTCTCTCGATTTGGACAAGGATGAAGCTGAGTTTTGGCTCACTACACTTCGCGCT 372
Query 358 CTTCTCTCACGAAACAA--C-TCTTCTGCATTGGTACTTCACTCAAGAAGCCGTAGTCTT 414
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct 373 CTTCTCTCACGAAACAACTCTTCTTCTGCATTGGTACTTCACTCAAGAAGCCGTAGTTTT 432
Query 415 GCTCCTGAAAATGGAGAACAAAGTAGTTCGAGCCAGAACTCGAAGTCCAACATCAGATCT 474
||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 433 GCTCCTGAAAATGGAGAACAAAGTAGTACGAGCAAGAACTCTAAGTCCAACATCAGATCT 492
Query 475 GTCAGCAGTGACACAAGCTATGAGGAACATGCAAAAAAGGCCTCAGGATCTCACTGCAAC 534
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 493 GTCAGCAGTGACACAAGCTACGAGGAACATGCAAAAAAGGCCTCAGGATCACACTGCAAC 552
Query 535 ACTCCACAGAGACTGGGGAAAGTTTTCTCAGAGGTTCTGTCACAAACTGCAGTACTAAAG 594
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 553 ACTCCACAGAGACTGGGGAAAGTTTTCTCAGAGGTTTTGTCACAAACTGCAGTACTAAAG 612
Query 595 GCACTCTCTTTGGACGAACTGGTTCATAAACCTCATACTTCGCCTCCAGAGACTATCGAG 654
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 613 GCACTCTCTTTGGATGAACTGGTTCATAAACCTCATACTTCGCCTCCAGAGGCTATAGAT 672
Query 655 AATCGACCAACAAATCACTCCTCCCCTGGCGTTGATACAAGTAAATATAGCATTTCCAGC 714
|||||| | || ||||| |||||||| |||||||||||||||||||||| ||||||||
Sbjct 673 AATCGATCTACTAATCA---CTCCCCTGCCGTTGATACAAGTAAATATAGCGTTTCCAGC 729
Query 715 GCAGTGAGTTCATCTAGTCAAGGATCAACTTTTGAAGACTTGAAGTCTCTCTGTGATGTC 774
|||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 730 GCAGTGAGCTCATCTAGTCAAGGCTCATGTTTTGAAGACTTGAAGTCTCTCTGTGATGTC 789
Query 775 TTTGTTTGGGGAGAAAGTATTGGAGATGGGCTATTAGGAGGTGGTATGCACAAAAGTGGC 834
||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||
Sbjct 790 TTTGTTTGGGGAGAAAGTATTGGAGATGGGCTACTAGGAGGTGGCATGCATAAAAGTGGC 849
Query 835 AGCAGCTCTTCTCTGATGACTGATTCTTTTTTACCCAAAGTCTTGAAATCACATGTGGCA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 AGCAGCTCTTCTCTGATGACTGATTCTTTTTTACCCAAAGTCTTGAAATCACATGTGGCA 909
Query 895 CTTGATGCACAGAGCATTTCTTGCGGTACCAATTATGCAGTGTTAGTAACAAAGCAGGGA 954
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 910 CTTGATGCACAGAGCATTTCTTGCGGCACCAATTATGCAGTGTTAGTCACAAAGCAGGGA 969
Query 955 CAGAT-GTACAGCTGGGGAGAAGAATCTGGTGGCAGGTTAGGACATGGAGTTTGTTCCTA 1013
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 CA-ATTGTACAGCTGGGGAGAAGAATCTGGTGGCAGGTTAGGACATGGAGTTTGTTCCTA 1028
Query 1014 TGTTCCACACCCAAAACTTATTGATGAATTTAACGGATCAACGGTGGAGTTAGCTGACTG 1073
|||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||
Sbjct 1029 CGTTCCACACCCAAAGCTTATCGATGAATTTGACGGATCAACGGTAGAGTTAGCTGACTG 1088
Query 1074 TGGGGAATTTCATACATGTGCTGTAACAGCCTCAGGGGATCTATATGCTTGGGGTGATGG 1133
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1089 TGGGGAATTTCATACCTGTGCTGTAACAACCTCAGGGGATCTATATGCTTGGGGTGATGG 1148
Query 1134 AGATCACAATGCCGGTCTCCTTGGACTTGGTAGTGGAGCTAGCCACTGGAAACCGGTACG 1193
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1149 AGACCACAATGCCGGTCTCCTTGGACTTGGTAGTGGAGCTAGCCATTGGAAACCGGTACG 1208
Query 1194 AATTCTCGGTCAGATGGAAGGTATATATGTAA-AAGCTATATCTTGCGGACCTTGGCATA 1252
||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||
Sbjct 1209 AATTCTCGGTCAGATGGAAGGTATAAATGTAAGAA-CTATATCTTGCGGACCTTGGCATA 1267
Query 1253 CAGCGTTTGTAACATCAGAAGGTAAGCTGTTTACATTTGGTGATGGTACTTTTGGTGCGC 1312
|||| ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1268 CAGCTTTTGTGACATCAGCAGGTAAGCTATTTACATTTGGTGATGGTACTTTTGGTGCGC 1327
Query 1313 TTGGACATGGTGATCGTATTAGCACAAACATACCTAGAGAAGTCGAGGCATTAAATGGCT 1372
||||||| ||||||||||| ||||||||||| ||||||||||| ||||| |||||||||
Sbjct 1328 TTGGACACGGTGATCGTATAAGCACAAACATTCCTAGAGAAGTAGAGGCGCTAAATGGCT 1387
Query 1373 GCAGAACAATAAAGG-CAGCTTGTGGCGTTTGGCATTCAGCTGCTGTTGTCAGTGTTTTC 1431
|||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1388 GCAGAACAATAA-GGACAGCTTGTGGCGTTTGGCATTCAGCCGCTGTTGTCAGTGTTTTC 1446
Query 1432 GGTGAGGCCACATCATCAGGGAAGCTTTTTACTTGGGGCGATGGAGATGATGGGAGACTC 1491
||||||||| |||||||||| ||||| ||||||||||| |||||||||||||||| ||||
Sbjct 1447 GGTGAGGCCTCATCATCAGGAAAGCTCTTTACTTGGGGTGATGGAGATGATGGGAAACTC 1506
Query 1492 GGACATGGTGATATAGAGTGTAGACTAATCCCATCTT-GTGTAACTGAACTGGATACAAC 1550
|||||||||||||||| || |||||||||||||| | ||||||||||||||||||||||
Sbjct 1507 GGACATGGTGATATAGCGTCTAGACTAATCCCAT-TGAGTGTAACTGAACTGGATACAAC 1565
Query 1551 TAGCTTTCAACAGGTGGCTTGTGGCCAGAGCATTACTGTTGCTCTCTCTATGTCTGGACA 1610
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1566 TAGCTTTCAACAGGTAGCTTGTGGCCAGAGCATAACTGTTGCTCTCTCTATGTCTGGACA 1625
Query 1611 AGTTTATGCAATGGGAACTGCTGATCCGAGTCATGAT-AT-T-GTGAGAGCTCCTTCTTG 1667
||||||||| ||||||||||||||||||||||| ||| || | |||||||||||||||||
Sbjct 1626 AGTTTATGCTATGGGAACTGCTGATCCGAGTCAGGATGATGTTGTGAGAGCTCCTTCTTG 1685
Query 1668 CATTGAAGGGGGTCTAGGAAAGAGTTTCGTCCAAGAAGTGGCTTGCGGGTTTCACCATAT 1727
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1686 TATTGAAGGGGGTCTAGGAAAGAGTTTTGTCCAAGAAGTGGCTTGCGGGTATCACCATAT 1745
Query 1728 CGCAGTTTTGAACTCGAAAGCTGAGGTCTACACTTGGGGCAAAGGATCAAACGGACAGCT 1787
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1746 CGCGGTTTTGAATTCGAAAGCTGAGGTCTACACTTGGGGCAAAGGATCAAACGGACAGCT 1805
Query 1788 CGGGCACGGAGACACTGAATATAGATGCATGCCGACTCTTGTGAAAGCTTTGAAAGGTAA 1847
||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1806 TGGGCATGGAGACACTGAATATAGACGCATGCCGACTCTTGTGAAAGCTTTAAAAGGTAA 1865
Query 1848 ACAGGTGAGAAAAGTGGTGTGTGGTTCTAATTACACAGCAACCATTTGTCTTCACAAACC 1907
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1866 ACAAGTGAGAAAAGTGGTGTGTGGTTCTAATTACACAGCAACAATTTGTCTTCACAAACC 1925
Query 1908 CATTACGGGTACCGATAGTACTAAGTGCTCCGGTTGTCGCCATCCTTTTAACTACATGAG 1967
||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||||||
Sbjct 1926 AATTACGGGTACTGATAGTACTAGGTGCTCTGGTTGTCGCCATCCTTTTAATTACATGAG 1985
Query 1968 GAAGCTTCACAACTGTTACAACTGCGGGAGTGTTTTCTGTAATTCTTGCACAAGTAAAAA 2027
|||||||||||||||||| ||||| |||||||| ||||||||||| ||||| ||||| ||
Sbjct 1986 GAAGCTTCACAACTGTTATAACTGTGGGAGTGTCTTCTGTAATTCATGCACTAGTAAGAA 2045
Query 2028 ATCCTTAGCAGCAGCCATGGCTCCCAAGACGAACAGGCCTTACCGTGTCTGTGATGACTG 2087
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2046 ATCCTTAGCAGCAGCTATGGCTCCCAAGACGAACAGGCCTTACCGTGTTTGTGATGACTG 2105
Query 2088 TTATATCAAACTCGAAGGAATTAGAGAATCTTTAGCAACACCTGCAAATAGTGCCAGGTT 2147
|||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||
Sbjct 2106 CTATATCAAACTCGAAGGAATTAGAGAATCTTTAGGAACTCCAGCAAATAGTGCCAGGTT 2165
Query 2148 TTCAAACGCAAGTCTACCATCTAGC--TA-CGAGATGGATGAAATTGGTATAACACCGCA 2204
||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 2166 TTCAAACGCAAGTCTACCATCTAGCAGTAACGAGATGGATGAAATTGGTACAACACCGCA 2225
Query 2205 GCGTCAGCTTCT--A-AGAGTGGATTCATTTGATTTCTTCAGACAAACTAAGCA-CGCGG 2260
|||||||||||| | || ||||| ||||||||||||||||||||||||||| | | |||
Sbjct 2226 GCGTCAGCTTCTTCATAGGGTGGACTCATTTGATTTCTTCAGACAAACTAAG-ATCCCGG 2284
Query 2261 ACCTGAAAACCATTGGTGAAACTTCAGGAGGAAGCTGCACGTCTTCGATTCACTCAAACA 2320
|||| |||||||||||||||||||||||| |||||||||||| |||| ||||||||| |
Sbjct 2285 ACCTAAAAACCATTGGTGAAACTTCAGGAACAAGCTGCACGTCGTCGACTCACTCAAATA 2344
Query 2321 TGGATATTAAAGGTAGTTTCAACCTGAAAGGCATACGACGACTCTCTAGGCTTACTTCTT 2380
||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||||||
Sbjct 2345 TGGATATTAAAGGTAGTTTCAACCTGAAAGGCATACGTCGACTCACCAGGCTAACTTCTT 2404
Query 2381 TTGATTCAGTTCAAGAAGAAGGCAAACAACGTACCAAGCATTGCGCTTCGAAATCCGACA 2440
||||||| ||| || ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 2405 TTGATTCGGTTAAACAAGAAGGCAAACAACGTTCCAAGCATTGCGCTTCGAAATCAGACA 2464
Query 2441 CATCCTCTCTTATAAGACACTCGGTGACTTGTGGTCTACCGTTTTCACGTAGAGGTTCTG 2500
|||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||
Sbjct 2465 CATCCTCTCTTATAAGACACTCAGTGACGTGTGGTCTCCCATTTTCACGTAGAGGTTCTG 2524
Query 2501 TTGAGTTGTTTCCTTTATCGATAAAATCCAGCCCCGTTGAATCCGTTGCGACTACTTCAG 2560
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 2525 TTGAGTTGTTTCCTTTATCGATAAAATCCAGCCCGGTTGAATCTGTTGCAACTACTTCAG 2584
Query 2561 ACTTCACCACAGACATTACTGATCATGAGTTACTACAAGAAGTGCCAAAGAAATCCAACC 2620
||||||| || |||||||| |||||||| ||||| ||||||||||||||||||||||| |
Sbjct 2585 ACTTCACAACCGACATTACAGATCATGATTTACTGCAAGAAGTGCCAAAGAAATCCAATC 2644
Query 2621 AGTGCCTAAGCCATGAAATATCAGTACTCAAAGCACAGGTGGAAGAGCTTACTCTAAAAT 2680
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2645 AGTGCCTGAGCCATGAAATATCAGTACTCAAAGCACAGGTGGAAGAGCTTACTCTAAAAT 2704
Query 2681 CGAAGAAACTAGAAACCGAACTTGGAAAGACTTCGAAGAAGCTTGAAGTTGCGGTACTAA 2740
|||| ||||||||| ||||||| |||| ||| ||||||||||||||||| || |||||||
Sbjct 2705 CGAAAAAACTAGAAGCCGAACTAGGAATGACATCGAAGAAGCTTGAAGTCGCAGTACTAA 2764
Query 2741 TGGCGCGAGATGATGCAGAGAAGATCAAATCTTCAGAAGAGATAGTCAGATCCTTAACTC 2800
||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| |
Sbjct 2765 TGGCGCGTGATGATGCAGAGAAGATCAAATCATCAGAAGAGATAGTCAGATCCCTAACAC 2824
Query 2801 TGCAGTTGATGAACACAACCAAGAAAGAAGTAGACAAGACAAGGAGACACCGAAACTCGT 2860
|||||||||||||| | |||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 2825 TGCAGTTGATGAACGCTACCAAGAAAGAAGTAGACAAGACAAGAAGACGCCGGAACTCGT 2884
Query 2861 TTTGA 2865
|||||
Sbjct 2885 TTTGA 2889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108138205555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5