BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47670.1
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937512 jgi|Araly1|937512|scaffold_501703.1 1033 0.0
> Ahg937512 jgi|Araly1|937512|scaffold_501703.1
Length=755
Score = 1033 bits (559), Expect = 0.0
Identities = 706/773 (91%), Gaps = 26/773 (3%)
Strand=Plus/Plus
Query 116 CGATCAAAAAACCATTACCCTTCAATGGAATCAATCAACACCTTGAAAGGCTACGACAAA 175
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 4 CGATCAAAAAACGATTA----TCAATGGAATCAATCAACACCTTGAAAGGCTACGACAAA 59
Query 176 GTATCCGACCAAGAAAACCAAATCCATCATCATCATCATTCTCCACTTCCAAAACCATCA 235
|||||||||||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct 60 ATATCCGACCAAGAAAACCAAATTCATCATCATCAT-A--CTCCACTTCCAAAACCATCT 116
Query 236 TCATTTTCCCGTAAAACCCTAATCGCCACCGGCTCCGTCGTATCTCTCCTCTTAATCCTC 295
|| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 117 TC-T---C--GTAAAACCCTAATCGCCACCGTCTCCGTCGTATCTCTCCTCTTAATCCTC 170
Query 296 TCCGTCGTCGCTTTAACCGCCGGAGCTTTCACTCACTC-TCCTCCACACCATCCACCTAT 354
|||||||||||||||||||||||| ||||||||| || ||||||||||||||| || ||
Sbjct 171 GCCGTCGTCGCTTTAACCGCCGGAGTTTTCACTCA-TCCTCCTCCACACCATCCTCCCAT 229
Query 355 CTCCTCCGCCTCTCTCAAGTCACTATGCTCCGTGACTCGTTACCCAGAGACCTGTTTCAA 414
||||||||| || ||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 230 CTCCTCCGCTTCACTCAAGTCAATCTGCGCCGTGACTCGTTACCCAGAGACCTGTTTCAA 289
Query 415 CT-CTCTATCATCTTCTCTCAACGAATCTGATTCAAAGCTTAACCCTGAATCAATCCTCG 473
| ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 290 -TGCTCTATCTTCTTCTCTCAACGAATCAGATTCAAAACTTAACCCTGAATCAATCCTCG 348
Query 474 AGCTTTCTCTTCGAGTCGCTGCTAAAGAGATCTCAAACCTCTCTATCTCTTTCCGATCAA 533
||||||||||||| ||||||| |||| | |||||||||||||||||||||||||||| |
Sbjct 349 AGCTTTCTCTTCGTGTCGCTGTTAAAAATCTCTCAAACCTCTCTATCTCTTTCCGATCTA 408
Query 534 TCAACGATATGCCTGAGGACGCGGCGGTTGGTGATTGTGTGAAGCTTTACACCGACGCGT 593
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 409 TCAACGATATGCCTGAAGACGCAGCGGTTGGTGATTGTGTGAAGCTTTACACCGACGCGG 468
Query 594 TGAGTCAACTCAACGATTCGATTACAGAGATCGAGAGAA-AGAAGAAGAAAGGTGGGAAT 652
||||||||||||||||||||||||||||||| |||| || ||||||||||||| | ||||
Sbjct 469 TGAGTCAACTCAACGATTCGATTACAGAGATTGAGA-AAGAGAAGAAGAAAGGAGCGAAT 527
Query 653 AATTGGTTGACGGAAGAAGTCGTCGGAGATGTTAAGACTTGGATCAGCGCCGCCATGACT 712
| ||||| || || |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 528 --T-GGTTGGCGAAACAAGTCGTCGGAGATGTTAAGACTTGGATTAGCGCCGCCATGACT 584
Query 713 GACGGTGAGACTTGTTCCGATGGAATTGAAGAAATGGGAACAATTGT-GGGTAATGAGAT 771
||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 585 GACGGTGAGACTTGTTCCGATGGGATTGAAGAAATGGGAACAATTGTTGGG-AATGAGAT 643
Query 772 CAAGAAAAAGATGGAGATGGCTAATCAGATGATGAGTATTAGTTTGGCCATTGTTAGTCA 831
|||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 644 TAAGAAAGAGATGGAGATGGCGAATCAGATGATGAGTATTAGCTTGGCCATTGTTAGCCA 703
Query 832 AATGAAGAAGCTTTTGTTGATAT-TTCACTAAACCAATCATAAAGGTTGGAAC 883
|||||||||||||| |||||| | |||||||||||||||||||||||| ||||
Sbjct 704 AATGAAGAAGCTTTGGTTGAT-TCTTCACTAAACCAATCATAAAGGTTTGAAC 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40829644107
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5