BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47690.1
Length=1328
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485133 jgi|Araly1|485133|fgenesh2_kg.5__1125__AT3G47690.1 1943 0.0
Ahg496428 jgi|Araly1|496428|fgenesh2_kg.8__2244__AT5G62500.1 752 0.0
> Ahg485133 jgi|Araly1|485133|fgenesh2_kg.5__1125__AT3G47690.1
Length=1272
Score = 1943 bits (1052), Expect = 0.0
Identities = 1216/1292 (94%), Gaps = 24/1292 (2%)
Strand=Plus/Plus
Query 1 ATCTTTCCAGTTGCCGTTGCCAGCCGTTTCCTACTTGTGctttttcacttttccgttctc 60
|||||||||||||||| |||||||||||| | ||| |||||||||||||||||||||||
Sbjct 1 ATCTTTCCAGTTGCCGCTGCCAGCCGTTT-C--CTTCTGCTTTTTCACTTTTCCGTTCTC 57
Query 61 tcaaacc-ttttttctctgcttccgtttcgtttctccgttcAAAACAAGATCGAATCATA 119
||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 58 TCAAACCTTTTTTTCTCTGCTT-C----CGTTTCTCCGTTCAAAACAAGATCGAATCATA 112
Query 120 AAAAGTTTCCTCCtttttttCTTCTCGAAACAAAAGAGAATTCTTGACGTCTTCTACTCC 179
||||| || ||||||||||||||||||||| ||| |||||||||||||||||||| ||||
Sbjct 113 AAAAGATTACTCCTTTTTTTCTTCTCGAAAGAAAGGAGAATTCTTGACGTCTTCTGCTCC 172
Query 180 ATTTTCCATCAATACCCATTTCTTCTATCGCTCTCGTTTCCAAGAAAAAAGAGGGTTTTA 239
||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 173 ATTTTCCGTCAATACCCATTTCTTCTATCGCTCTCGTTTCCAAG--AAAAGAGGGGTTTA 230
Query 240 GAGAGAAGCAAAACTCAAATGGCGACGAACATCGGAATGATGGATAGTGCATACTTCGTC 299
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 231 GAGAAAAGCAAAACTCAAATGGCGACGAACATCGGAATGATGGATAGTGCTTACTTCGTC 290
Query 300 GGAAGAAACGAGATTCTGACTTGGATTAATGATCGTCTTCACCTCAATCTCTCTCGCGTC 359
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 291 GGAAGAAACGAGATTCTGACTTGGATCAATGATCGTCTTCAGCTCAATCTCTCTCGCGTC 350
Query 360 GAAGAGGCTGCATCTGGTGCTGTGCAATGTCAGATGCTTGATATGACATTTCCAGGAGTT 419
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 351 GAAGAGGCTGCATCCGGTGCTGTGCAATGTCAAATGCTTGATATGACCTTTCCAGGAGTT 410
Query 420 GTGCCAATGCACAAGGTTAACTTTGATGCAAAGAACGAGTACGATATGATACAAAACTAC 479
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 411 GTGCCAATGCACAAGGTTAACTTTGATGCAAAGAACGAGTACGACATGATACAGAACTAC 470
Query 480 AAGGTCTTGCAAGATGTGTTCAACAAGCTGAAAATTACAAAGCCATTGGAAATTAACAGG 539
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AAGATCCTGCAAGATGTGTTCAACAAGCTGAAAATTACAAAGCCATTGGAAATTAACAGG 530
Query 540 CTTGTCAAAGGCCGGCCACTGGATAACTTGGAGTTTCTGCAATGGCTGAAACGTTTCTGT 599
|||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 531 CTTGTCAAAGGCCGACCACTGGACAACTTGGAGTTTTTGCAATGGCTGAAACGTTTCTGT 590
Query 600 GATTCCATTAATGGTGGCATTATGAATGAGAACTATAATCCAGTGGAGCGAAGATCAAGA 659
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 591 GATTCCATTAATGGTGGCATTATGAATGAGAATTATAATCCAGTGGAGCGAAGATCAAGA 650
Query 660 AATGGTAAAGAGAGGAGTGTGAAGGGATCTAATAAGATTCCAAAGTCACTGCAAACAAAC 719
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 651 AATGGTAAAGAGAGGAGTGTGAAGGGATCTAACAAGATTCCAAAGTCACTGCAAACTAAC 710
Query 720 AATAACCATCCTCCACCCAATTCCAGTTCAGTTGGTCTTAGCAAAGCATCAGGGCCCAAG 779
||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 711 AATAATCATCCTCTACCCAATTCCGGTTCAGTTGGACTTAGCAAAGCATCAGGGCCCAAG 770
Query 780 TCAGCAAAAGCAGCTGAAGTGCAGGCTTTGTCGAAGGAGCTCGTGGATCTCAAGATCTCT 839
|||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 771 CCAGCAAAAGCAGCTGAAGTGCAGGCTTTGTTGAAGGAGCTTGCGGATCTCAAGATCTCT 830
Query 840 ACTGATCTCTTGGAAAAAGAAAGAGACTTTTACTTCTCCAAGCTCCGGGATGTAGAGATA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 831 ACTGATCTCTTGGAAAAAGAAAGAGACTTTTACTTCTCCAAGCTCCGGGATGTTGAGATA 890
Query 900 CTCTGCCAAACTCCTGAGCTAGATGATCTTCCGATAGTGGTAGCAGTGAAGAAGATACTG 959
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 891 CTCTGCCAAACTCCTGAATTAGATGATCTTCCGATAGTGGTAGCAGTGAAGAAGATACTG 950
Query 960 TATGCAACCGATGCAAATGAATCTGCATTAGAAGACGCTCAAGAGTACCTAAACCAGTCC 1019
||||||||||||| ||||||||||||| |||||||||| ||||||||| |||||||||||
Sbjct 951 TATGCAACCGATGGAAATGAATCTGCACTAGAAGACGCCCAAGAGTACTTAAACCAGTCC 1010
Query 1020 CTAGGAGTTGAAGATGATGAAGCTGAAGGAAACGGAGAACAACTGGAAGAAGAAAAGACT 1079
||||||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||
Sbjct 1011 CTAGGAGTTGAAGATGA--A-GCTGAAGCAAACGGAGAACAACAGGAAGAAGAAAAGACT 1067
Query 1080 CAAGCCTAAGCTCTGACTATTAACAATCCTAAGTAGAAGGG-TGAC-GAACAATGGCTGG 1137
||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| |
Sbjct 1068 CAAGCCTAAGCTCTGACTATTAACAATCCTAAGTAGAAGGGGTGACAGA-CAATGGCTTG 1126
Query 1138 CCATGGCCTTCTCTTCCAAGTTTCTTTTGTGAAAGGAAACTAACTGAAACTTGAAGATGA 1197
|||| ||||| |||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1127 CCATAGCCTT-TCTTGCAAGTTTCTTTTGTTAAAGGAAACTAACTGAAACTTGAAGATGA 1185
Query 1198 ATGAGCTTCTTCTATTAGAAAGATT-AGTTTGAAAACAAAGAGACTTATTTTTGTTACTA 1256
|||||||| |||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 1186 ATGAGCTT-----ATTAGAAACCTTTAGTTTGAAAACAGTGAGACTTATTTTTGTTACTA 1240
Query 1257 TTCAAGAGGCTTTTTTCTTGTTTTAAAACAAT 1288
|||||||||||||||| |||||||||||||||
Sbjct 1241 TTCAAGAGGCTTTTTTTTTGTTTTAAAACAAT 1272
> Ahg496428 jgi|Araly1|496428|fgenesh2_kg.8__2244__AT5G62500.1
Length=1284
Score = 752 bits (407), Expect = 0.0
Identities = 709/851 (83%), Gaps = 36/851 (4%)
Strand=Plus/Plus
Query 256 AAATGGCGACGAACATCGGAATGATGGATAGTGCATACTTCGTCGGAAGAAACGAGATTC 315
|||||||||||||||| || |||||||||||||| ||||| || ||||| ||||||||||
Sbjct 226 AAATGGCGACGAACATTGGGATGATGGATAGTGCTTACTTTGTTGGAAGGAACGAGATTC 285
Query 316 TGACTTGGATTAATGATCGTCTTCACCTCAATCTCTCTCGCGTCGAAGAGGCTGCATCTG 375
| | |||||| ||||| || ||||| |||||||||||||| |||||||||||||||| |
Sbjct 286 TCAGTTGGATCAATGACCGCCTTCATCTCAATCTCTCTCGTATCGAAGAGGCTGCATCGG 345
Query 376 GTGCTGTGCAATGTCAGATGCTT-GATATGACATTTCCAGGAGTTGTGCCAATGCACAAG 434
|||||||||||||||| ||| || || ||||| |||||||||||||||||||||||||||
Sbjct 346 GTGCTGTGCAATGTCAAATG-TTGGACATGACCTTTCCAGGAGTTGTGCCAATGCACAAG 404
Query 435 GTTAACTTTGATGCAAAGAACGAGTACGATATGATACAAAACTACAAGGTCT-TGCAAGA 493
||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||
Sbjct 405 GTTAACTTTGATGCAAAGAACGAGTACGAAATGATACAAAACTACAAGGT-TATGCAAGA 463
Query 494 TGTGTTCAACAAGCTGAAAATTACAAAGCCATTGGAAATTAACAGGCTTGTCAAAGGCCG 553
|| |||| ||| ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 464 AGTCTTCACCAAATTGAAAATTACAAAGCCATTGGAAGTCAACAGGCTTGTCAAAGGCCG 523
Query 554 GCCACTGGATAACTTGGAGTTTCTGCAATGGCTGAAACG-TTTCTGTGATTCCATTAATG 612
||||| || || ||||||||||| |||||||||||||| ||| || |||||||| ||||
Sbjct 524 ACCACTAGACAATTTGGAGTTTCTACAATGGCTGAAACGATTT-TGCGATTCCATAAATG 582
Query 613 GTGGCATTATGAATGAGAACTATAATCCAGTGGAGCGAAGATCAAGAAATGGTAAAGAGA 672
||||||||||||| ||||| ||||||||||| || |||||||||||| ||| | |||||
Sbjct 583 GTGGCATTATGAACGAGAATTATAATCCAGTAGAACGAAGATCAAGAGGTGGCAGAGAGA 642
Query 673 GGAGTGTGAAGGGATCTAATAAGAT-TCCAAAGTCACTGCAAACAAACAATAA-C--CAT 728
|| || |||||||||| |||||| || ||||||| ||||||||||||||| | |||
Sbjct 643 AAAGCGTAAAGGGATCTAGTAAGATCTC-AAAGTCATTGCAAACAAACAATATGCATCAT 701
Query 729 CCTCCACCCA--A-TTCCAGTT--C-AGTTGGTCTTA-GCAAAGCA---TCAGG-GCCCA 777
|||||| || | ||||| | | ||||| | |||| ||| ||| || |
Sbjct 702 CCTCCAGTCACTACTTCCAACAAACCACCTGGTCCCAAGCAA-GCAAAATCACATGCA-A 759
Query 778 ----AG-TC-A-GCAA-A-AGCAGCTGAAGTGCAGGCTTTGTCGAAGGAGCTCGTGGATC 828
|| | | |||| | | |||| |||||||| ||| |||| || ||| | | ||||
Sbjct 760 TTGGAGGTGGAAGCAACACATCAGCCGAAGTGCAAGCTCTGTCAAAAGAGGTAGCAGATC 819
Query 829 TCAAGATCTCTACTGATCTCTTGGAAAAAGAAAGAGACTTTTACTTCTCCAAGCTCCGGG 888
||||| |||| |||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 820 TCAAGGTCTCGGTTGATCTCTTGGAAAAAGAAAGAGATTTTTACTTCTCTAAGCTCCGGG 879
Query 889 ATGTAGAGATACTCTGCCAAACTCCTGAGCTAGATGATCTTCCGATAGTGGTAGCAGTGA 948
|| |||||||||| || || |||||||| || ||||||||||||||||||||||| || |
Sbjct 880 ATATAGAGATACTATGTCAGACTCCTGAACTTGATGATCTTCCGATAGTGGTAGCGGTTA 939
Query 949 AGAAGATACTGTATGCAACCGATGCAAATGAATCTGCATTAGAAGACGCTCAAGAGTACC 1008
|||||||| | || |||||||||||| ||||||||| ||||||| |||||||||| ||
Sbjct 940 AGAAGATATTATACGCAACCGATGCAGATGAATCTGTGCTAGAAGAAGCTCAAGAGTGCC 999
Query 1009 TAAACCAGTCCCTAGGAG-TTGAAGATGATGAAGCTGAAGGAAACGGAGAACAACTGGAA 1067
|||||||||| ||||| | |||| | |||||||| |||||||| | ||| || |||
Sbjct 1000 TAAACCAGTCTCTAGG-GCTTGAGGTTGATGAAGAAGAAGGAAAAGAAGAGGAAGAAGAA 1058
Query 1068 GAAGAA-AAGA 1077
|||||| ||||
Sbjct 1059 GAAGAAGAAGA 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49674160851
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5