BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47700.1
Length=2606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485134 jgi|Araly1|485134|fgenesh2_kg.5__1126__AT3G47700.1 2211 0.0
> Ahg485134 jgi|Araly1|485134|fgenesh2_kg.5__1126__AT3G47700.1
Length=2543
Score = 2211 bits (1197), Expect = 0.0
Identities = 1379/1466 (94%), Gaps = 15/1466 (1%)
Strand=Plus/Plus
Query 1152 GCTCACTGTCTTTGTACTTGGTGAAAGAGATCTTTCCTATATATGTTGGTCAGCTAGACG 1211
||||| ||||||||||||||||||||||||| || |||||||||||||| |||||| |||
Sbjct 1081 GCTCATTGTCTTTGTACTTGGTGAAAGAGATATTCCCTATATATGTTGGACAGCTAAACG 1140
Query 1212 AAGCAAATGAAACTGATCTTCGTTCTGAGGCTAAGGTCTCGTGGCTCCATCTCATTGACC 1271
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1141 AAGCAAATGAAACTGATCTTCGTTCTGAGGCCAAGGTTTCGTGGCTCCATCTCATTGACC 1200
Query 1272 TGATGATCTCCTTTGATAAGCGAGTTCAGTCTTTGGTATCACAATCAGGAATACTTTCGC 1331
|||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1201 TGATGATCTCTTTTGATAAGCGAGTACAGTCTCTGGTATCACAATCAGGAATACTTTCGC 1260
Query 1332 TTCAAGAAGATGGGAATCTTTTGAGAATTTCCTCTCTCTCAGTTTTCTGTGACAGACCTG 1391
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TTCAAGAAGATGGGAATCTTCTGAGAATTTCCTCTCTCTCAGTTTTCTGTGACAGACCTG 1320
Query 1392 ATTGGCTTGATTTATGGGCAGAGATAGAGCTAGATGAGAGGCTCGTCAAATTCAAGG-AG 1450
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1321 ATTGGCTTGATTTATGGGCAGAGATAGAGCTAGATGAGAGGCTAGTCAAATTCAAGGCAG 1380
Query 1451 GAGATTGATAACGACAGAAATTGGACAGCGAAGGTCCAAGACGAACTCATCTCCAGTTCC 1510
| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1381 AA-ATTGATAACGACAGAAATTGGACAGCAAAGGTCCAAGACGAACTCATCTCCACTTCC 1439
Query 1511 AACGTTTACAGACCACCAATCATTTCCAGCATCTTTCTACAGCATTTGTCATCAATAATC 1570
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1440 AACGTTTACAGACCACCAATCATTTCCAGCATCTTTCTACAGCACTTGTCATCAATAATC 1499
Query 1571 GAACGATCCAAATCAGTGCCGGCC-TTATATTTGAGGGCTAGGTTCCTGAGACTGGCAGC 1629
|||||||||||||||||||||||| || || |||||||| |||||||||| | |||||||
Sbjct 1500 GAACGATCCAAATCAGTGCCGGCCATT-TACTTGAGGGCAAGGTTCCTGAAATTGGCAGC 1558
Query 1630 CTCACCAACAATTCATAAGTTCTTGGATTGCCTCCTTCTCAGGTGCCAAGACGCCGACGG 1689
|||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||| ||
Sbjct 1559 CTCACCAACAATCCATAAGTTCTTGGATTGTCTCCTTGTCAGGTGCCAAGATGCCGAAGG 1618
Query 1690 ACTAACTGCATTAACTGAAAATAACGATCTAATCAAGGTCTCGAACTCTATTAATGCTGG 1749
||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1619 ACTAACTGCATTAACCGAAAATAACGATCTAATCAAGGTCTCAAACTCTATCAATGCTGG 1678
Query 1750 TCACTACATTGAATCTGTCTTAGAAGAATGGTCTGAGGATGTCTTTTTCCTTGAAATGGG 1809
|||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 1679 TCACTACATTGAATCTGTATTAGAAGAATGGTCTGAAGATGTATTTTTCCTCGAAATGGG 1738
Query 1810 AACTGGACAGCACGATCCACAGGAAGTTCCAGGACTGGAGAACTTTACTGAACCTTCTGA 1869
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1739 AACTGGACAGCATGATCCACAGGAAGTTCCAGGACTGGAGAACTTTACGGAACCTTCTGA 1798
Query 1870 AGGTATTTTCGGAGAAGAATTTGAAAAGTTGGAGAAGTTCCGGCTAGAGTGGATAAACAA 1929
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1799 AGGTATTTTCGGAGAAGAATTTGAGAAGTTGGAGAAGTTCCGGCTAGAGTGGATAAACAA 1858
Query 1930 ATTGTCGGTGGTGATCTTGAGAGGCTTTGATGCTCGAA-TCCGAGAATACATAAAAAACA 1988
||||| |||||| |||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1859 GTTGTCTGTGGTGGTCTTGAGAGGCTTTGATGCTCGAACTC-GAGAATACATAAAAAACA 1917
Query 1989 GAAAGCAATGGCAGGAGAAGAAAGACAAAGAATGGACGGTGTCAAGGGCACTAGTTGGGG 2048
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1918 GAAAGCAATGGCAGGAGAAGAGAGACAAAGAATGGACGGTGTCAAGGGCACTAGTTGGGG 1977
Query 2049 CTCTAGACTACTTGCAAGGAAAAACGTCTATAATAGAAGAAAATCTAAACAAAGCAGACT 2108
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1978 CTCTAGACTACTTGCAAGGAAAAGCGTCTATAATAGAAGAAAATCTAAACAAAACAGACT 2037
Query 2109 TTACCGCTATGTGGAGAACTCTAGCCTCAGAGATAGACAAGTTGTTCTTCAACAGCATCT 2168
|||| ||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 2038 TTACAGCTATGTGGAGGACTCTAGCCTCTGAAATAGACAAGTTATTCTTCAACAGCATCT 2097
Query 2169 TGATGGCGAACGTGAAGTTTACCAATGATGGAGTCGAAAGGTTAAAAGTAGACATGGAGG 2228
||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 2098 TGATGGCAAACGTGAAGTTTTCCAATGATGGAGTCGAAAGGTTAAAAGAAGACATGGAGG 2157
Query 2229 TTCTATATGGGGTTTTCCGGACGTGGTGTGTTAGACCCGAAGGTTTCTTTCCTAAACTAA 2288
|||| |||||||||||| |||| ||||| |||||||||||||||||||||||||||||||
Sbjct 2158 TTCTCTATGGGGTTTTCAGGACATGGTGCGTTAGACCCGAAGGTTTCTTTCCTAAACTAA 2217
Query 2289 GTGAGGGGCTTACGCTTCTGAAGATGGAAGAGAAGCAAGTGAAGGACGGTCTGAGTAGAG 2348
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2218 GTGAGGGGCTTACGCTTCTGAAGATGGAAGAGAAGCAAGTGAAGGATGGTCTGAGTAGAG 2277
Query 2349 GCGATAAGTGGCTACGTGAGAATAGAATTCGATATTTGAGTGAAGCCGAAGCCAAGAAGG 2408
||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 2278 GCGATAAGTGGTTACGTGAGAACAGAGTTCGATATTTGAGTGAAGCCGAAGCCAAGAAGG 2337
Query 2409 TAGCGAAGAGTAGAGTGTTCTCTTAGTTAGATATTTTTCAGCAAATCAATATCTCATAC- 2467
|||| || |||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2338 TAGCTAAAAGTAGAGTGTTCTCTTAGTTAGATCGCTTTCAGCAAATCAATATCTCAGACT 2397
Query 2468 -G-AAGGTACATTCATAGGTGAGATCATTTCATTTATTTGTGGATTAAGATATAACACAC 2525
| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 2398 AGGAAGGTACATTCATAGGTGGGATCATTTCATTTATTTGTGGATTAAAATATAACACTC 2457
Query 2526 AACTTTGGATTTTTAATTGAAATTGAACTAACCAGCTCTGGTTCTGTTTCGTCT---T-- 2580
|| |||||||||||||||||| ||| |||||||||| |||||| |||||||||| |
Sbjct 2458 AAGTTTGGATTTTTAATTGAAGTTGTACTAACCAGCCCTGGTTTTGTTTCGTCTCGGTGT 2517
Query 2581 -AAATTAATGATTCATGAGTTAATAG 2605
||||||||||||||||| |||||||
Sbjct 2518 GAAATTAATGATTCATGATTTAATAG 2543
Score = 1670 bits (904), Expect = 0.0
Identities = 1022/1081 (95%), Gaps = 0/1081 (0%)
Strand=Plus/Plus
Query 33 ACGACGAATCGCAAATGGAGGCGATCAAACCACTTCCACAGGTCTCGAGCTTCTCCGCTT 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACGACGAATCGCAAATGGAGGCGATCAAACCACTTCCACAGGTCTCGAGCTTCTCCGCTT 60
Query 93 CGGTATTTAGCTTTCTCGATGGCAGATTCAAAGAATCCACGGATCTCTCTCATTCTACGG 152
| ||||||||||| ||||||| || ||||| ||| |||||||||||||| || ||| | |
Sbjct 61 CAGTATTTAGCTTCCTCGATGACAAATTCAGAGACTCCACGGATCTCTCCCAGTCTCCAG 120
Query 153 GTCTGGTTTCCGAGTTACAGACGGAGATTTCCGAATTGGATCAGAGATTGGCCGGATTAA 212
|||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 121 GTCTGGTTTCTGAGTTACAGACCGAGATTTCCGAATTGGATCAGAGATTAGCCGGATTAA 180
Query 213 ATCGCCAGCTCGAGTCAGGTCTCGCTGCTTACGCTTCGTTTTCCGATCGCGTCGGTGGTC 272
|||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 181 ATCGCCAGCTCGAGTCCGGTCTTGCTTCTTACGCTTCGTTTTCCGATCGCGTCGGTGGTT 240
Query 273 TATTTTTCGAGGTTAATGCCAAATTGGCTGATCTCTCTTCTTCTACCTCCGTTACTCGCT 332
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 241 TATTTGTCGAGGTTAATGCCAAATTGGCTAATCTCTCTTCTTCTACCTCCGTTCCTCGCT 300
Query 333 CCGCGTCAGATAGCGGAAAGGAGGAGGAGGCGACGGAGCATGTAGCCGGAGAGGATCTTC 392
||||||||||| |||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 301 CCGCGTCAGATGGCGGAAAGGAGGAGGAGGCGACGGAGCATGTAGCTGGGGAGGAGCTTC 360
Query 393 CTTCATTAGCAAAGGAAGTAGCACAAGTTGAGTCTGTGCGTGCTTATGCTGAGACTGCAC 452
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 CGTCATTAGCAAAGGAAGTAGCACAAGTTGAGTCTGTGCGGGCTTATGCTGAGACTGCAC 420
Query 453 TAAAACTTGACACTTTAGTTGGTGATATTGAGGATGCTGTGATGTCTTCTTTGAATAAAA 512
|||||||||| ||| |||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 421 TAAAACTTGATACTCTAGTGGGTGAGATCGAGGATGCTGTGATGTCTTCTTTGAATAAAA 480
Query 513 ACTTAAGAACATCTCGGTCAAGTGGTTTTGAAGAAGTGCGTCTACATGCTATTAAAACAC 572
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 481 ACTTGAGAACATCTCGGTCAAGCGGTTTTGAAGAAGTGCGTCTACATGCTATCAAAACAC 540
Query 573 TTAAAACGACAGAAGAGATACTGAGTTCAGTAGCAAAGAGACATCCTCGGTGGGCACGTC 632
|||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||
Sbjct 541 TTAAAACGACAGAAGAGATACTGATTTCAGTAGCTAGGAGACATCCTCGGTGGGCACGTC 600
Query 633 TTGTTTCTGCTGTTGATCATAGAGTTGATAGAGCTTTAGCTATGATGAGACCTCAGGCAA 692
|||||||||| |||||||| ||||| |||||||| ||||| |||||||||||||| ||||
Sbjct 601 TTGTTTCTGCAGTTGATCACAGAGTAGATAGAGCCTTAGCCATGATGAGACCTCAAGCAA 660
Query 693 TTGCTGATTACAGAGCGTTGCTTTCTTCTCTTCGATGGCCACCTCAGCTTTCTACACTAA 752
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 TTGCGGATTACAGAGCGTTGCTTTCTTCTCTTGGATGGCCACCTCAGCTTTCTACACTAA 720
Query 753 CTTCGGCAAGTCTTGATTCAAAGTCAGAAAATGTTCAAAATCCGCTTTTCAACATGGAAG 812
|||| || |||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 721 CTTCAGCGAGTCTTGATTCAAAGTCAGAAAATGTCCAAAATCCGCTTTTCACCATGGAAG 780
Query 813 GGAGCCTCAAAAGTCAATACTGTGGAAGTTTTCATGCCTTGTGTAGCCTGCAGGGGTTAC 872
||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| |
Sbjct 781 GGAGCCTCAAAAGTCAATACTGTGGAAATTTTCAGGCCTTGTGCAGCCTGCAGGGGTTGC 840
Query 873 AGTTGCAAAGAAAGTCGCGGCAGCTTGGGATCCATAAGGGAGAAAATGTTCTTTTCCACC 932
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 AGTTGCAAAGAAAGTCGCGGCAGCTTGGGAGCCATAAGGGAGAAAATGTTCTTTTCCACC 900
Query 933 AGCCACTCTGGGCTATTGAAGAGCTGGTCAACCCTCTGACAGTTGCATCTCAGCGACATT 992
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGCCACTCTGGGCTGTTGAAGAGCTGGTCAACCCTCTGACAGTTGCATCTCAGCGACATT 960
Query 993 TTACAAAGTGGAGTGAAAAGCCAGAATTCATTTTTGCCCTTGTGTATAAAATCACAAGGG 1052
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 961 TTACAAAGTGGAGTGAAAAGCCTGAATTCATTTTTGCCCTTGTTTATAAAATCACAAGGG 1020
Query 1053 ACTATGTCGATTCTATGGATGAGTTGTTACAACCGCTTGTGGATGAAGCAAAACTAGCTG 1112
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1021 ACTATGTCGATTCTATGGATGAGTTGTTACAACCGCTCGTTGATGAAGCAAAACTAGCTG 1080
Query 1113 G 1113
|
Sbjct 1081 G 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98272832100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5