BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47720.1
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323380 jgi|Araly1|323380|fgenesh1_pm.C_scaffold_5000924 1136 0.0
> Ahg323380 jgi|Araly1|323380|fgenesh1_pm.C_scaffold_5000924
Length=1026
Score = 1136 bits (615), Expect = 0.0
Identities = 828/927 (89%), Gaps = 30/927 (3%)
Strand=Plus/Plus
Query 98 GAAGAACAAGGGTCAACAAATTCATCTGAAAGCAGAAGCAATGAAGAGTTATTCTCTGAT 157
||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 76 GAACAACAAGGATCAACAAATTCATCTGAAAGCAGAAGCAATGAAGAG---GTCTCTGAC 132
Query 158 TGTGATCAACAACATTCTTCCATAGCTAACGAGTTCGGACTAACGGAGTTGCCTAAAGAC 217
|||||||| ||||||||||| |||||||||||| |||| |||| ||||||||||||||||
Sbjct 133 TGTGATCAGCAACATTCTTCAATAGCTAACGAGCTCGGGCTAATGGAGTTGCCTAAAGAC 192
Query 218 GATAAAGTTTACGAGCTTATCTACCGTCATTGCCAATCTAAGCTAACTTCTCACTTAAGC 277
||||||| |||| |||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 193 GATAAAGCTTACAAGCTAATCTATGGTCATTGCCAATCTAAGCTAACTTCTCACTTAGGC 252
Query 278 AATCAGTTTGAGATTGTATCAATTCTCAAGAACGGATTTCAAACACCATTAGGACAAGCT 337
||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 253 AATCAATTTCAGATTGTATCAATTCTCAAGAACGGATTTAAAACACCATTAGGACAAGCT 312
Query 338 AAGCTTAAAGCCTTTCAAATATACGCTGAGTCTGTTGCAAAGAAAAGCGGCAG---CTGC 394
||||| ||||||||||| |||||| |||||||||| |||||||||||||| || ||||
Sbjct 313 AAGCTCAAAGCCTTTCAGATATACACTGAGTCTGTGGCAAAGAAAAGCGGAAGTTACTGC 372
Query 395 ---T---GTGGAAACAAAGCTGC-GGTGGCTGAAGCGGCGAGAGTGAAATACGGTTGTTG 447
| |||||||||||||||| | ||| |||||| |||||||||||||||||||||||
Sbjct 373 GAATGCGGTGGAAACAAAGCTGCTGCTGG-TGAAGCAGCGAGAGTGAAATACGGTTGTTG 431
Query 448 CGGTGTGGAGAAGGAAGAGTTAAAAGCGATTCTAATGTAT-G-----G--A-TTTA-G-- 495
|||||||||||||||||||||||||||||||||||||||| | | | |||| |
Sbjct 432 CGGTGTGGAGAAGGAAGAGTTAAAAGCGATTCTAATGTATGGATTTAGCCAGTTTAGGAA 491
Query 496 CAACAATGCCTTATGTCTCTCACCAGACAATGCTCCTCTTCAATGTATGATAGATCCTTC 555
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 492 CAACAATGGCTTATGTCTCTCACCAGACAATGCTTCTCTTCAATGTATGATAGATCCTTC 551
Query 556 ATCATCTTGTAACGAAGACGGGATTAGCTTCTTGCTGTTTTCAAGAATTATTATGGGAAA 615
||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct 552 ATCATCTTGTAACGAAGACGGGACTAGATTCTTGTTGTTTTCAAGAATTATTATGGGAAA 611
Query 616 ATCAGAGGTTGTGTGCTCGACATCACAATCGTATCCGAGTTCTATGGAGTTTGATTCAGG 675
|||||||||| || ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 612 ATCAGAGGTTATGGGCTCGACCGCACAATCGTATCCGAGTTCTCCAGAGTTTGATTCAGG 671
Query 676 TGTAGACAGTTTGACATCTCCAAACAAGTATATTATTTGGAGCACACACATGAACACTCA 735
|||||||||||| | |||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 672 TGTAGACAGTTTAATATCTCCGAAGAAGTATATGATTTGGAGCACACACATGAACACTCA 731
Query 736 TGTTTTGCCTGAGTTTGTTGTTTGCATCAAAACTCCATCTATCTTGAAAAGAAAAAACCC 795
||||||||||||||||||||||||||||||||||||||| ||||||| ||| || |||||
Sbjct 732 TGTTTTGCCTGAGTTTGTTGTTTGCATCAAAACTCCATCCATCTTGAGAAGTAAGAACCC 791
Query 796 GAAATCTCCTTGGATTTCGTTTCCGGT-CTTAATCAACTCGATATCAAAGTTTCTAAATC 854
|||||| |||||||||| |||||| | || | |||| |||||||| ||||||||||| |
Sbjct 792 GAAATCGCCTTGGATTTTGTTTCCAATACTGA-TCAAATCGATATCGAAGTTTCTAAACC 850
Query 855 AATCGCAAATCCGTCTCATTCATAAACACTATAAAGAACATCAAGATAGGAGAATCTCGC 914
|||||||||||||||||||| ||||||||||||||| ||||||| || ||||||| |
Sbjct 851 CGTCGCAAATCCGTCTCATTCAGAAACACTATAAAGAATATCAAGAAAGTAGAATCTTAC 910
Query 915 GGTGTGAGTTGATTCAACGCCTGAGAAGTATAACTGGAGATAGCTTATTGGTTCAAATCA 974
||| ||||||||||||||| ||||| | |||| | |||||||| ||||||||||||||||
Sbjct 911 GGTTTGAGTTGATTCAACGACTGAGGACTATAGCCGGAGATAGGTTATTGGTTCAAATCA 970
Query 975 TCAAATCTGTT-GGACAAAAGGTACAT 1000
|||||||| || |||||||||||||||
Sbjct 971 TCAAATCT-TTCGGACAAAAGGTACAT 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43955723301
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5