BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47790.1
Length=2960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485140 jgi|Araly1|485140|fgenesh2_kg.5__1132__AT3G47790.1 4324 0.0
Ahg485137 jgi|Araly1|485137|fgenesh2_kg.5__1129__AT3G47750.1 128 2e-28
> Ahg485140 jgi|Araly1|485140|fgenesh2_kg.5__1132__AT3G47790.1
Length=2909
Score = 4324 bits (2341), Expect = 0.0
Identities = 2677/2839 (94%), Gaps = 23/2839 (1%)
Strand=Plus/Plus
Query 28 CCATCAAACCTTCTCATATTCTCTGCGATGGCGGATTCTAGTCCTGCAAGTTTCTTGACT 87
|||||||| ||||||| |||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1 CCATCAAATCTTCTCAAATTCTCTGTGATGGCGGATTCAAGTCCTGCAAGTTTCTTGACT 60
Query 88 CAAGCCGACGCTTTACTGAGGAAGAATTTAGTTTTCCAGAAACGGAACATATGGAGCAAC 147
|||||| | ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAAGCCAATGCTTTGCTTAGGAAGAATTTAGTTTTCCAGAAACGGAACATATGGAGCAAT 120
Query 148 ATACGACTCATCACAATCCCTTTCTTTCTCTGTTTACTTCTCCTTGTTATTCAAATGCTC 207
||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 121 ATACGTCTCATCACGATCCCTTTCTTCCTCTGTTTACTTCTCCTTGTTGTTCAAATGCTC 180
Query 208 TTCGACACTCAATTCAACGACGTCCATGGTCAATGTGGCTGCAACGAGAAAACTTGCGGC 267
||| ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| |
Sbjct 181 TTCAACACTCAATTCAACGACATCCATGGTCAATGTGGTTGCAAAGAGAAAACTTGCGAC 240
Query 268 TTAAGGTATTCGACTTCAGAGCAAGCAGCTTTTTGTGCCATTCCTAATCCACCACAATGG 327
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 TTAAGGTATTCTACTTCAGAGCAAGCAGCGTTTTGTGCCATTCCTAATCCACCACAATGG 300
Query 328 ACTCCACTACTTCAGATCCCGGCTCCTGAATACCGAGCCGCGATCC-CATACCCGAGCCA 386
|||||| | ||||| || ||||||||| ||||||||| ||||| || |||| || |||||
Sbjct 301 ACTCCAATGCTTCAAATTCCGGCTCCTCAATACCGAGTCGCGA-CCACATATCCTAGCCA 359
Query 387 TACTTCCCCTGCAACTTTTCTCTTCACCGGGAATAATCAGTCGCTCGGAAATATTCTAAT 446
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 360 TTCTTCCCCTGCAACTTTTCTCTTCACCGGGAATAATCAGTCGCTCGGAAAAATTTTAAT 419
Query 447 GGGAAATATGTATAGCAATTCATCTGGATTTGATGGAGATTTAGCCTATTATGTCTTGGG 506
|||||||||||||||| ||| ||||| |||||||||||| |||||| | |||||||||||
Sbjct 420 GGGAAATATGTATAGCGATTTATCTGAATTTGATGGAGAGTTAGCCAACTATGTCTTGGG 479
Query 507 CTCATCATCTTTCCCTGCATACACCAATCATATGGACTCCGCTTTCATCTCAGATCTTCC 566
|||||||||||||||||||||||||||| |||||||||| |||||||| |||||| ||||
Sbjct 480 CTCATCATCTTTCCCTGCATACACCAATTATATGGACTCTGCTTTCATATCAGATATTCC 539
Query 567 CATCTACAACATCCAACATGAATGCTCACCAAACTCTTCTTTCTCAATCTTAATTCACCA 626
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AATCTACAACATCCAAAATGAATGCTCACCAAACTCTTCTTTCTCAATCTTAATTCACCA 599
Query 627 ATCACCTCTTGCTTTCCCTAAAGAGGTAAACTGTGTCCAAGGCTTAAATTTGTGGCGGAA 686
||||||| |||| ||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 600 ATCACCTATTGCCTTCCCTAAAAAGGTAAACTGTGTCCAAGGCTTAAATCTGTGGCGGAA 659
Query 687 TAGTTCTTCGGATGTGAACAACGAGCTTTTCAAGGGTTACCGAAAAGGAAATCCAGACAA 746
||||| ||| ||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 660 TAGTTTTTCCAATGTGAACAACGAACTTTTCAAGGGTTACCGAAAAGGAAATCCGGACGA 719
Query 747 GAAGATCAATGAGTTTGCTGGAGCTTTTGATTTTCAGAACACAAATGGGAACAATCTCAA 806
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAAGATCAACGAGTTTGCTGCAGCTTTTGATTTTCAGAACACAAATGGGAACAATCTCAA 779
Query 807 TGT-TAGTGTTTGGTACAACTCCACCTACAAGAACGATACAGTGGTTCGACCGATGGCTC 865
||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 780 TGTCT-GTGTTTGGTACAACTCCACCTACAAGAACGATACAGTGGTTCGACCTATGGCTC 838
Query 866 TGATACGAGTCCCTCGCTTAGTTAATCTGGCATCTAATGCATATCTTGAGTTCCTAAAAG 925
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 839 TGATTCGAGTCCCTCGCTTAGTTAATCAGGCATCTAATGCATATCTTGAGTTCCTAAAAG 898
Query 926 GTTCTGAGACAAAGATACTCTTTGAGTATGTCAAGGAAATGCCTAAACCAGAGACTAAAC 985
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GTTCTGAGACAAAGATACTCTTTGAGTATGTCAAGGAAATGCCTAAACCAGAGACTAAAT 958
Query 986 TGAGCTTAGACATCGCCTCTCTAATCGGCCCGCTCTTCTTCACATGGGTCATTCTGTTGT 1045
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 959 TGAGCTTAGACATCGCCTCTCTAATCGGCCCACTCTTCTTCACATGGGTCATTCTGTTGT 1018
Query 1046 TATTTCCTGTGATCTTAACAACACTGGTGTATGAGAAACAACAGAGGTTAAGAATCATGA 1105
|||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1019 TATTCCCTGTGATCTTAACAACACTGGTCTATGAGAAACAACAGAGGCTAAGAATCATGA 1078
Query 1106 TGAAAATGCATGGACTTGGAGATGTTCCTTACTGGATAGTTTCATACACTTATTTTCTCT 1165
|||||||||| |||||||| |||| |||| ||||||||||||||||||| ||||||||||
Sbjct 1079 TGAAAATGCAAGGACTTGGCGATGCTCCTCACTGGATAGTTTCATACACATATTTTCTCT 1138
Query 1166 TGATATCGATTCTCTACATGTTGTGCTTTGCGATATTCGGTTCACTCATCGGGTTAAACT 1225
||||||||||||| |||||||| |||||||||||||||||||| |||| ||||||||||
Sbjct 1139 TGATATCGATTCTATACATGTTATGCTTTGCGATATTCGGTTCTGTCATTGGGTTAAACT 1198
Query 1226 TCTTTAGGCTTAATGACTATAGTATCCAACTTGTGTTCTTCTTCATATGCATAAATCTTC 1285
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1199 TCTTCAGGCTTAATGACTATAGTATCCAACTTGTGTTCTTCCTCATATGCATAAATCTTC 1258
Query 1286 AAATATCAGTCGCCTTTTTAGCATCTGCAATGTTTTCAGATGTTAAAACTGCTACAGTTA 1345
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1259 AAATATCAGTCGCCTTTTTAGCAGCTGCAATGTTTTCAGATGTTAAAACGGCTACAGTTA 1318
Query 1346 TAGCATACATATATGTCTTTGGAACCGGGCTTCTAGGAATCTTTCTTTTCCAATTCTTCT 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TAGCATACATATATGTCTTTGGAACCGGGCTTCTAGGAATCTTTCTTTTCCAATTCTTCT 1378
Query 1406 TGGAAGATCCTCTCTTCCCAAGAGGATGGATAATAGCAATGGAGTTATACCCTGGATTTT 1465
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1379 TGGAAGATCCTCTCTTCCCAAGAGGATGGATAATTGCAATGGAGTTATACCCTGGATTTT 1438
Query 1466 CTTTATACCGCGGGCTATATGAGTTATCACAATCTGCGTTTGCGGGTGATTACCGCGGGA 1525
||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |
Sbjct 1439 CTTTATACCGCGGGCTATATGAGTTATCACAATCTGCATTTTCGGGAGATTACCGCGGCA 1498
Query 1526 TTGATGGAATGAAATGGAGAGATTTTG-GTAATGGAATGAAAGAAGTGACCTGTATCATG 1584
|||||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 1499 TTGATGGAATGAGATGGAGAGATTTTGAG-AATGGAATGAAAGAAGTGACTTGTATCATG 1557
Query 1585 CTCATTGAGTGGCTGTTACTGCTTGGTTTAGCATATTACATTGATCAAATCATTTACTCC 1644
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1558 CTCATTGAGTGGCTGTTACTGCTTGTTTTAGCATATTACATTGATCAAATCACTTACTC- 1616
Query 1645 AGG-AAACATCCATTGTTCTTCCTCCT-ACAAAGCACTTCCAAGAAGAAACAACA-CTTC 1701
||| ||||||||||||||||||||||| | ||||| |||| |||||||||||||| | |
Sbjct 1617 AGGGAAACATCCATTGTTCTTCCTCCTGA-AAAGCTCTTCAAAGAAGAAACAACATCA-C 1674
Query 1702 T-CTGACA-A-CAAAA-TATCCAAAGTTGTTGTAGAGATGGAAAAGCCAGATGTGTGTCG 1757
| ||| || | | ||| | |||||||||||| | || |||||||| ||||||||||||
Sbjct 1675 TTCTGTCAGAGCCAAACT-TCCAAAGTTGTTATCGAAATGGAAAAATCAGATGTGTGTCA 1733
Query 1758 AGAGAGGGAGAAAGTAGAGCAGTG-TCTACTTAAATCAACTAGAGACT-CTGCGGTTTTA 1815
||||||||||||||||||||| | |||||| |||||||| |||||| | |||||||||
Sbjct 1734 AGAGAGGGAGAAAGTAGAGCA-TCATCTACTCGAATCAACTGGAGACTGC-GCGGTTTTA 1791
Query 1816 TGCAATAATCTCAAGAAGGTGTACTCGGGTAAGGACGGTAATCCTCAGAAGCTCGCGGTT 1875
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1792 TGCAACAACCTCAAGAAGGTGTACTCGGGTAAGGACGGTAATCCTCAGAAACTCGCGGTT 1851
Query 1876 AGAGGATTATCTCTTGCTTTACCTCAAGGAGAATGCTTTGGCATGCTTGGTCCTAATGGA 1935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 AGAGGATTATCTCTTGCTTTACCTCAAGGAGAATGCTTTGGCATGCTTGGTCCTAATGGA 1911
Query 1936 GCAGGCAAAACCTCTTTCATCAACATGATGACAGGAATCATCAAACCATCGTCTGGCACA 1995
||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 1912 GCAGGCAAAACTTCTTTCATCAATATGATGACAGGAATCATTAAACCATCATCTGGCACA 1971
Query 1996 GCATTTGTCCAAGGTCTTGACATACTAACCGATATGGACCGGATATATACAACAATTGGA 2055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 GCATTTGTCCAAGGTCTTGACATACTAACCGATATGGACCGGATATATACAACAATTGGA 2031
Query 2056 GTCTGTCCACAACATGATCTTCTGTGGGAGAAGTTGAGTGGAAGGGAACATCTACTGTTC 2115
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2032 GTCTGTCCACAACATGATCTTCTGTGGGAGAAATTGAGTGGAAGGGAACATCTACTGTTT 2091
Query 2116 TATGGAAGGCTCAAGAATCTCAAAGGTTCTGTCTTAACACAAGCTGTCGAAGAGTCGCTT 2175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2092 TATGGAAGGCTCAAGAATCTCAAAGGTTCTGTCTTAACACAAGCTGTCGAAGAGTCGCTT 2151
Query 2176 CGCAGTGTCAACCTTTTCCATGGAGGGATTGGTGACAAACAAGTCAGTAAATACAGTGGA 2235
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||
Sbjct 2152 CGCAGTGTCAACCTTTTCCATGGAGGGATTGGCGACAAACAAGTCGGTAAATACAGCGGA 2211
Query 2236 GGGATGAAGAGACGGCTCAGCGTCGCTATTTCTCTTATAGGAAGCCCCAAAGTTGTTTAC 2295
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2212 GGGATGAAGAGACGGCTCAGCGTCGCTATTTCTCTTATAGGAAGCCCAAAAGTTGTTTAC 2271
Query 2296 ATGGATGAGCCAAGTACCGGGCTAGATCCAGCCTCGAGGAAGAGCTTATGGGATGTAGTG 2355
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 2272 ATGGATGAGCCAAGTACTGGGCTTGATCCAGCCTCGAGGAAAAGCTTATGGGATGTAGTG 2331
Query 2356 AAACGGGCTAAGCGAAAAGGGGCGATAATACTCACCACACATTCAATGGAAGAAGCTGAA 2415
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2332 AAACGGGCTAAGCGAAAAGGGGCGATAATACTCACTACACATTCAATGGAAGAAGCTGAA 2391
Query 2416 ATTTTGTGTGACCGTATAGGAATTTTCGTCGATGGTAGTTTGCAATGCATTGGCAATCCA 2475
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 2392 ATTTTATGTGACCGTATTGGAATTTTCGTCGATGGTAGTTTGCAATGCATAGGCAATCCA 2451
Query 2476 AAGGAGTTGAAGAGTCGATATGGAGGATCCTATGTATTGACTGTGACAACCTCGGAGGAA 2535
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2452 AAGGAGTTGAAGAGTCGATATGGAGGATCCTATGTATTGACTATGACAACCTCGGAGGAA 2511
Query 2536 CATGAGAAAGAAGTAGAGCAATTAGTGCATAACATCTCTACGAATGCAAAGAAGATATAT 2595
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2512 CATGAGAAAGAAGTGGAGCAATTAGTGCATAACATCTCTATGAATGCAAAGAAGATATAT 2571
Query 2596 CGAACCGCGGGGACTCAGAAGTTTGAGCTGCCAAAGCAAGAGGTGAAGATTGGTGAGGTG 2655
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2572 CGAACCGCGGGGACTCAGAAGTTTGAGCTGCCAAAGCAGGAGGTGAAGATTGGTGAGGTG 2631
Query 2656 TTTAAGGCTTTGGAGAAGGCGAAGACAATGTTTCCAGTAGTTGCTTGGGGACTTGCAGAC 2715
||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2632 TTTCAGGCGGTGGAGAAGGCGAAGACAATGTTTCCGGTAGTTGCTTGGGGACTTGCAGAC 2691
Query 2716 ACAACTCTTGAAGATGTCTTTATAAAGGTTGCTCAAACTTCTTAACTAACAACTCTTTTG 2775
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2692 ACAACTCTTGAAGATGTCTTTATAAAGGTTGCACAAACTTCTTAACTAACAACTCTTTTG 2751
Query 2776 AATGATTCCTTCAGATCAATCTCAATCTTTTCTAT-ATCTTATGTCAAGCTCAAAATCAC 2834
|||| || ||| ||||||| ||||| |||||| | |||||||||||| |||||| |||
Sbjct 2752 AATGTTTTCTTTTGATCAATTTCAATATTTTCT-TCATCTTATGTCAAACTCAAAGTCAG 2810
Query 2835 AAACTATATTTCATATAAC 2853
|||||||||||||||||||
Sbjct 2811 AAACTATATTTCATATAAC 2829
Score = 115 bits (62), Expect = 2e-24
Identities = 75/81 (93%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 2880 AAAATCATTTATTTCCGTAAATAGTTAATACGAGCTTTCGAGTCTAAAAAGGGAAACAAT 2939
|||||||||||||||||||||||||||||| || |||| | ||||||||||||||||||
Sbjct 2830 AAAATCATTTATTTCCGTAAATAGTTAATATGAT-TTTCTATTCTAAAAAGGGAAACAAT 2888
Query 2940 GGATAGACTTCATTTAGACGT 2960
|||||||||||| ||||||||
Sbjct 2889 GGATAGACTTCAATTAGACGT 2909
> Ahg485137 jgi|Araly1|485137|fgenesh2_kg.5__1129__AT3G47750.1
Length=2736
Score = 128 bits (69), Expect = 2e-28
Identities = 210/275 (76%), Gaps = 22/275 (8%)
Strand=Plus/Plus
Query 2494 TATGGAGGATCCTATGTATTGACTGTGACAACCTC-GGAGGAACATGAGAAAGAAGTAGA 2552
||||| ||||| ||||| || || ||||||| || | |||||||| ||||| || ||
Sbjct 2449 TATGGTGGATCTTATGTGTTAACAATGACAACATCATCA-GAACATGAAAAAGATGTGGA 2507
Query 2553 GCA-ATTAGTGCATA-ACATCTCTACGAATGCAAAGAAGATATATCGA-ACCGCGGGGAC 2609
| | || || || | | | ||| | || || ||||||||||||| | | ||| |||||
Sbjct 2508 G-ATGTTGGTTCA-AGATGTTTCTCCAAACGCCAAGAAGATATATC-ACATCGCAGGGAC 2564
Query 2610 TCAGAAGTTTGAGCTGCC-AAAGCAAGAGGTGA-AGAT-TGGTGAGGTGTTTAAGGCTTT 2666
|| || |||||| | || |||| |||| || | | | | | || |||||| |||| |
Sbjct 2565 ACAAAAATTTGAGATCCCAAAAG-AAGAAGT-ACGGGTCTCG-GAAGTGTTTCAGGCGGT 2621
Query 2667 GGAGAAGGCGAAGA-CAATGTTTCCAGTAG-TTGCTTGGGGACTTGCAGACACAACTCTT 2724
||||||||||| | |||| ||| || | |||||||||||||||||||||||||||||
Sbjct 2622 AGAGAAGGCGAAAAGCAAT-TTTAGGGT-GTTTGCTTGGGGACTTGCAGACACAACTCTT 2679
Query 2725 GAAGATGTCTTT-ATAAAGGTTGCTCA-AACTTCT 2757
|||||||| ||| || ||||||||| | |||||||
Sbjct 2680 GAAGATGT-TTTCATTAAGGTTGCT-AGAACTTCT 2712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111756778830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5