BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G47790.1 Length=2960 Score E Sequences producing significant alignments: (Bits) Value Ahg485140 jgi|Araly1|485140|fgenesh2_kg.5__1132__AT3G47790.1 4324 0.0 Ahg485137 jgi|Araly1|485137|fgenesh2_kg.5__1129__AT3G47750.1 128 2e-28 > Ahg485140 jgi|Araly1|485140|fgenesh2_kg.5__1132__AT3G47790.1 Length=2909 Score = 4324 bits (2341), Expect = 0.0 Identities = 2677/2839 (94%), Gaps = 23/2839 (1%) Strand=Plus/Plus Query 28 CCATCAAACCTTCTCATATTCTCTGCGATGGCGGATTCTAGTCCTGCAAGTTTCTTGACT 87 |||||||| ||||||| |||||||| |||||||||||| ||||||||||||||||||||| Sbjct 1 CCATCAAATCTTCTCAAATTCTCTGTGATGGCGGATTCAAGTCCTGCAAGTTTCTTGACT 60 Query 88 CAAGCCGACGCTTTACTGAGGAAGAATTTAGTTTTCCAGAAACGGAACATATGGAGCAAC 147 |||||| | ||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CAAGCCAATGCTTTGCTTAGGAAGAATTTAGTTTTCCAGAAACGGAACATATGGAGCAAT 120 Query 148 ATACGACTCATCACAATCCCTTTCTTTCTCTGTTTACTTCTCCTTGTTATTCAAATGCTC 207 ||||| |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 121 ATACGTCTCATCACGATCCCTTTCTTCCTCTGTTTACTTCTCCTTGTTGTTCAAATGCTC 180 Query 208 TTCGACACTCAATTCAACGACGTCCATGGTCAATGTGGCTGCAACGAGAAAACTTGCGGC 267 ||| ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| | Sbjct 181 TTCAACACTCAATTCAACGACATCCATGGTCAATGTGGTTGCAAAGAGAAAACTTGCGAC 240 Query 268 TTAAGGTATTCGACTTCAGAGCAAGCAGCTTTTTGTGCCATTCCTAATCCACCACAATGG 327 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 241 TTAAGGTATTCTACTTCAGAGCAAGCAGCGTTTTGTGCCATTCCTAATCCACCACAATGG 300 Query 328 ACTCCACTACTTCAGATCCCGGCTCCTGAATACCGAGCCGCGATCC-CATACCCGAGCCA 386 |||||| | ||||| || ||||||||| ||||||||| ||||| || |||| || ||||| Sbjct 301 ACTCCAATGCTTCAAATTCCGGCTCCTCAATACCGAGTCGCGA-CCACATATCCTAGCCA 359 Query 387 TACTTCCCCTGCAACTTTTCTCTTCACCGGGAATAATCAGTCGCTCGGAAATATTCTAAT 446 | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 360 TTCTTCCCCTGCAACTTTTCTCTTCACCGGGAATAATCAGTCGCTCGGAAAAATTTTAAT 419 Query 447 GGGAAATATGTATAGCAATTCATCTGGATTTGATGGAGATTTAGCCTATTATGTCTTGGG 506 |||||||||||||||| ||| ||||| |||||||||||| |||||| | ||||||||||| Sbjct 420 GGGAAATATGTATAGCGATTTATCTGAATTTGATGGAGAGTTAGCCAACTATGTCTTGGG 479 Query 507 CTCATCATCTTTCCCTGCATACACCAATCATATGGACTCCGCTTTCATCTCAGATCTTCC 566 |||||||||||||||||||||||||||| |||||||||| |||||||| |||||| |||| Sbjct 480 CTCATCATCTTTCCCTGCATACACCAATTATATGGACTCTGCTTTCATATCAGATATTCC 539 Query 567 CATCTACAACATCCAACATGAATGCTCACCAAACTCTTCTTTCTCAATCTTAATTCACCA 626 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 AATCTACAACATCCAAAATGAATGCTCACCAAACTCTTCTTTCTCAATCTTAATTCACCA 599 Query 627 ATCACCTCTTGCTTTCCCTAAAGAGGTAAACTGTGTCCAAGGCTTAAATTTGTGGCGGAA 686 ||||||| |||| ||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 600 ATCACCTATTGCCTTCCCTAAAAAGGTAAACTGTGTCCAAGGCTTAAATCTGTGGCGGAA 659 Query 687 TAGTTCTTCGGATGTGAACAACGAGCTTTTCAAGGGTTACCGAAAAGGAAATCCAGACAA 746 ||||| ||| ||||||||||||| ||||||||||||||||||||||||||||| ||| | Sbjct 660 TAGTTTTTCCAATGTGAACAACGAACTTTTCAAGGGTTACCGAAAAGGAAATCCGGACGA 719 Query 747 GAAGATCAATGAGTTTGCTGGAGCTTTTGATTTTCAGAACACAAATGGGAACAATCTCAA 806 ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 720 GAAGATCAACGAGTTTGCTGCAGCTTTTGATTTTCAGAACACAAATGGGAACAATCTCAA 779 Query 807 TGT-TAGTGTTTGGTACAACTCCACCTACAAGAACGATACAGTGGTTCGACCGATGGCTC 865 ||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 780 TGTCT-GTGTTTGGTACAACTCCACCTACAAGAACGATACAGTGGTTCGACCTATGGCTC 838 Query 866 TGATACGAGTCCCTCGCTTAGTTAATCTGGCATCTAATGCATATCTTGAGTTCCTAAAAG 925 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 839 TGATTCGAGTCCCTCGCTTAGTTAATCAGGCATCTAATGCATATCTTGAGTTCCTAAAAG 898 Query 926 GTTCTGAGACAAAGATACTCTTTGAGTATGTCAAGGAAATGCCTAAACCAGAGACTAAAC 985 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 GTTCTGAGACAAAGATACTCTTTGAGTATGTCAAGGAAATGCCTAAACCAGAGACTAAAT 958 Query 986 TGAGCTTAGACATCGCCTCTCTAATCGGCCCGCTCTTCTTCACATGGGTCATTCTGTTGT 1045 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 959 TGAGCTTAGACATCGCCTCTCTAATCGGCCCACTCTTCTTCACATGGGTCATTCTGTTGT 1018 Query 1046 TATTTCCTGTGATCTTAACAACACTGGTGTATGAGAAACAACAGAGGTTAAGAATCATGA 1105 |||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 1019 TATTCCCTGTGATCTTAACAACACTGGTCTATGAGAAACAACAGAGGCTAAGAATCATGA 1078 Query 1106 TGAAAATGCATGGACTTGGAGATGTTCCTTACTGGATAGTTTCATACACTTATTTTCTCT 1165 |||||||||| |||||||| |||| |||| ||||||||||||||||||| |||||||||| Sbjct 1079 TGAAAATGCAAGGACTTGGCGATGCTCCTCACTGGATAGTTTCATACACATATTTTCTCT 1138 Query 1166 TGATATCGATTCTCTACATGTTGTGCTTTGCGATATTCGGTTCACTCATCGGGTTAAACT 1225 ||||||||||||| |||||||| |||||||||||||||||||| |||| |||||||||| Sbjct 1139 TGATATCGATTCTATACATGTTATGCTTTGCGATATTCGGTTCTGTCATTGGGTTAAACT 1198 Query 1226 TCTTTAGGCTTAATGACTATAGTATCCAACTTGTGTTCTTCTTCATATGCATAAATCTTC 1285 |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1199 TCTTCAGGCTTAATGACTATAGTATCCAACTTGTGTTCTTCCTCATATGCATAAATCTTC 1258 Query 1286 AAATATCAGTCGCCTTTTTAGCATCTGCAATGTTTTCAGATGTTAAAACTGCTACAGTTA 1345 ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 1259 AAATATCAGTCGCCTTTTTAGCAGCTGCAATGTTTTCAGATGTTAAAACGGCTACAGTTA 1318 Query 1346 TAGCATACATATATGTCTTTGGAACCGGGCTTCTAGGAATCTTTCTTTTCCAATTCTTCT 1405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 TAGCATACATATATGTCTTTGGAACCGGGCTTCTAGGAATCTTTCTTTTCCAATTCTTCT 1378 Query 1406 TGGAAGATCCTCTCTTCCCAAGAGGATGGATAATAGCAATGGAGTTATACCCTGGATTTT 1465 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1379 TGGAAGATCCTCTCTTCCCAAGAGGATGGATAATTGCAATGGAGTTATACCCTGGATTTT 1438 Query 1466 CTTTATACCGCGGGCTATATGAGTTATCACAATCTGCGTTTGCGGGTGATTACCGCGGGA 1525 ||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| | Sbjct 1439 CTTTATACCGCGGGCTATATGAGTTATCACAATCTGCATTTTCGGGAGATTACCGCGGCA 1498 Query 1526 TTGATGGAATGAAATGGAGAGATTTTG-GTAATGGAATGAAAGAAGTGACCTGTATCATG 1584 |||||||||||| |||||||||||||| | |||||||||||||||||||| ||||||||| Sbjct 1499 TTGATGGAATGAGATGGAGAGATTTTGAG-AATGGAATGAAAGAAGTGACTTGTATCATG 1557 Query 1585 CTCATTGAGTGGCTGTTACTGCTTGGTTTAGCATATTACATTGATCAAATCATTTACTCC 1644 ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1558 CTCATTGAGTGGCTGTTACTGCTTGTTTTAGCATATTACATTGATCAAATCACTTACTC- 1616 Query 1645 AGG-AAACATCCATTGTTCTTCCTCCT-ACAAAGCACTTCCAAGAAGAAACAACA-CTTC 1701 ||| ||||||||||||||||||||||| | ||||| |||| |||||||||||||| | | Sbjct 1617 AGGGAAACATCCATTGTTCTTCCTCCTGA-AAAGCTCTTCAAAGAAGAAACAACATCA-C 1674 Query 1702 T-CTGACA-A-CAAAA-TATCCAAAGTTGTTGTAGAGATGGAAAAGCCAGATGTGTGTCG 1757 | ||| || | | ||| | |||||||||||| | || |||||||| |||||||||||| Sbjct 1675 TTCTGTCAGAGCCAAACT-TCCAAAGTTGTTATCGAAATGGAAAAATCAGATGTGTGTCA 1733 Query 1758 AGAGAGGGAGAAAGTAGAGCAGTG-TCTACTTAAATCAACTAGAGACT-CTGCGGTTTTA 1815 ||||||||||||||||||||| | |||||| |||||||| |||||| | ||||||||| Sbjct 1734 AGAGAGGGAGAAAGTAGAGCA-TCATCTACTCGAATCAACTGGAGACTGC-GCGGTTTTA 1791 Query 1816 TGCAATAATCTCAAGAAGGTGTACTCGGGTAAGGACGGTAATCCTCAGAAGCTCGCGGTT 1875 ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1792 TGCAACAACCTCAAGAAGGTGTACTCGGGTAAGGACGGTAATCCTCAGAAACTCGCGGTT 1851 Query 1876 AGAGGATTATCTCTTGCTTTACCTCAAGGAGAATGCTTTGGCATGCTTGGTCCTAATGGA 1935 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1852 AGAGGATTATCTCTTGCTTTACCTCAAGGAGAATGCTTTGGCATGCTTGGTCCTAATGGA 1911 Query 1936 GCAGGCAAAACCTCTTTCATCAACATGATGACAGGAATCATCAAACCATCGTCTGGCACA 1995 ||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||| Sbjct 1912 GCAGGCAAAACTTCTTTCATCAATATGATGACAGGAATCATTAAACCATCATCTGGCACA 1971 Query 1996 GCATTTGTCCAAGGTCTTGACATACTAACCGATATGGACCGGATATATACAACAATTGGA 2055 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1972 GCATTTGTCCAAGGTCTTGACATACTAACCGATATGGACCGGATATATACAACAATTGGA 2031 Query 2056 GTCTGTCCACAACATGATCTTCTGTGGGAGAAGTTGAGTGGAAGGGAACATCTACTGTTC 2115 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2032 GTCTGTCCACAACATGATCTTCTGTGGGAGAAATTGAGTGGAAGGGAACATCTACTGTTT 2091 Query 2116 TATGGAAGGCTCAAGAATCTCAAAGGTTCTGTCTTAACACAAGCTGTCGAAGAGTCGCTT 2175 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2092 TATGGAAGGCTCAAGAATCTCAAAGGTTCTGTCTTAACACAAGCTGTCGAAGAGTCGCTT 2151 Query 2176 CGCAGTGTCAACCTTTTCCATGGAGGGATTGGTGACAAACAAGTCAGTAAATACAGTGGA 2235 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||| Sbjct 2152 CGCAGTGTCAACCTTTTCCATGGAGGGATTGGCGACAAACAAGTCGGTAAATACAGCGGA 2211 Query 2236 GGGATGAAGAGACGGCTCAGCGTCGCTATTTCTCTTATAGGAAGCCCCAAAGTTGTTTAC 2295 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2212 GGGATGAAGAGACGGCTCAGCGTCGCTATTTCTCTTATAGGAAGCCCAAAAGTTGTTTAC 2271 Query 2296 ATGGATGAGCCAAGTACCGGGCTAGATCCAGCCTCGAGGAAGAGCTTATGGGATGTAGTG 2355 ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| Sbjct 2272 ATGGATGAGCCAAGTACTGGGCTTGATCCAGCCTCGAGGAAAAGCTTATGGGATGTAGTG 2331 Query 2356 AAACGGGCTAAGCGAAAAGGGGCGATAATACTCACCACACATTCAATGGAAGAAGCTGAA 2415 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2332 AAACGGGCTAAGCGAAAAGGGGCGATAATACTCACTACACATTCAATGGAAGAAGCTGAA 2391 Query 2416 ATTTTGTGTGACCGTATAGGAATTTTCGTCGATGGTAGTTTGCAATGCATTGGCAATCCA 2475 ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 2392 ATTTTATGTGACCGTATTGGAATTTTCGTCGATGGTAGTTTGCAATGCATAGGCAATCCA 2451 Query 2476 AAGGAGTTGAAGAGTCGATATGGAGGATCCTATGTATTGACTGTGACAACCTCGGAGGAA 2535 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2452 AAGGAGTTGAAGAGTCGATATGGAGGATCCTATGTATTGACTATGACAACCTCGGAGGAA 2511 Query 2536 CATGAGAAAGAAGTAGAGCAATTAGTGCATAACATCTCTACGAATGCAAAGAAGATATAT 2595 |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2512 CATGAGAAAGAAGTGGAGCAATTAGTGCATAACATCTCTATGAATGCAAAGAAGATATAT 2571 Query 2596 CGAACCGCGGGGACTCAGAAGTTTGAGCTGCCAAAGCAAGAGGTGAAGATTGGTGAGGTG 2655 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2572 CGAACCGCGGGGACTCAGAAGTTTGAGCTGCCAAAGCAGGAGGTGAAGATTGGTGAGGTG 2631 Query 2656 TTTAAGGCTTTGGAGAAGGCGAAGACAATGTTTCCAGTAGTTGCTTGGGGACTTGCAGAC 2715 ||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2632 TTTCAGGCGGTGGAGAAGGCGAAGACAATGTTTCCGGTAGTTGCTTGGGGACTTGCAGAC 2691 Query 2716 ACAACTCTTGAAGATGTCTTTATAAAGGTTGCTCAAACTTCTTAACTAACAACTCTTTTG 2775 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2692 ACAACTCTTGAAGATGTCTTTATAAAGGTTGCACAAACTTCTTAACTAACAACTCTTTTG 2751 Query 2776 AATGATTCCTTCAGATCAATCTCAATCTTTTCTAT-ATCTTATGTCAAGCTCAAAATCAC 2834 |||| || ||| ||||||| ||||| |||||| | |||||||||||| |||||| ||| Sbjct 2752 AATGTTTTCTTTTGATCAATTTCAATATTTTCT-TCATCTTATGTCAAACTCAAAGTCAG 2810 Query 2835 AAACTATATTTCATATAAC 2853 ||||||||||||||||||| Sbjct 2811 AAACTATATTTCATATAAC 2829 Score = 115 bits (62), Expect = 2e-24 Identities = 75/81 (93%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 2880 AAAATCATTTATTTCCGTAAATAGTTAATACGAGCTTTCGAGTCTAAAAAGGGAAACAAT 2939 |||||||||||||||||||||||||||||| || |||| | |||||||||||||||||| Sbjct 2830 AAAATCATTTATTTCCGTAAATAGTTAATATGAT-TTTCTATTCTAAAAAGGGAAACAAT 2888 Query 2940 GGATAGACTTCATTTAGACGT 2960 |||||||||||| |||||||| Sbjct 2889 GGATAGACTTCAATTAGACGT 2909 > Ahg485137 jgi|Araly1|485137|fgenesh2_kg.5__1129__AT3G47750.1 Length=2736 Score = 128 bits (69), Expect = 2e-28 Identities = 210/275 (76%), Gaps = 22/275 (8%) Strand=Plus/Plus Query 2494 TATGGAGGATCCTATGTATTGACTGTGACAACCTC-GGAGGAACATGAGAAAGAAGTAGA 2552 ||||| ||||| ||||| || || ||||||| || | |||||||| ||||| || || Sbjct 2449 TATGGTGGATCTTATGTGTTAACAATGACAACATCATCA-GAACATGAAAAAGATGTGGA 2507 Query 2553 GCA-ATTAGTGCATA-ACATCTCTACGAATGCAAAGAAGATATATCGA-ACCGCGGGGAC 2609 | | || || || | | | ||| | || || ||||||||||||| | | ||| ||||| Sbjct 2508 G-ATGTTGGTTCA-AGATGTTTCTCCAAACGCCAAGAAGATATATC-ACATCGCAGGGAC 2564 Query 2610 TCAGAAGTTTGAGCTGCC-AAAGCAAGAGGTGA-AGAT-TGGTGAGGTGTTTAAGGCTTT 2666 || || |||||| | || |||| |||| || | | | | | || |||||| |||| | Sbjct 2565 ACAAAAATTTGAGATCCCAAAAG-AAGAAGT-ACGGGTCTCG-GAAGTGTTTCAGGCGGT 2621 Query 2667 GGAGAAGGCGAAGA-CAATGTTTCCAGTAG-TTGCTTGGGGACTTGCAGACACAACTCTT 2724 ||||||||||| | |||| ||| || | ||||||||||||||||||||||||||||| Sbjct 2622 AGAGAAGGCGAAAAGCAAT-TTTAGGGT-GTTTGCTTGGGGACTTGCAGACACAACTCTT 2679 Query 2725 GAAGATGTCTTT-ATAAAGGTTGCTCA-AACTTCT 2757 |||||||| ||| || ||||||||| | ||||||| Sbjct 2680 GAAGATGT-TTTCATTAAGGTTGCT-AGAACTTCT 2712 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 111756778830 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5