BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47800.1
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937524 jgi|Araly1|937524|scaffold_501715.1 1796 0.0
> Ahg937524 jgi|Araly1|937524|scaffold_501715.1
Length=1118
Score = 1796 bits (972), Expect = 0.0
Identities = 1058/1100 (96%), Gaps = 4/1100 (0%)
Strand=Plus/Plus
Query 157 AAAAAATGGTGAAGAAGCAATCGCCATTACACGTTGTCGGTGTGTCTGTTTTGATGGTGT 216
||||||||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||
Sbjct 17 AAAAAATGGTGAAGAAGCAATCGTCATTACACGTTCTTGGTGTGTCTGTTTTGCTGGTGT 76
Query 217 TGTTATGCAGTGTTAATTACAGTCTCTGTGAAAAGATCAAAACGTATAAGCTCACAAGAG 276
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 77 TGTTATGTTGTGTTAATTACAGTCTCTGTGAAAAGATCAAAACCTATAAGCTCACAAGAG 136
Query 277 GAAGCTTAAGTGTTACTTTCACTAACTATGGTGCTGTCATGACCTCTCTTCTCCTCCCTG 336
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 GAAGCTTAAGTGTTACCTTCACTAACTATGGTGCTGTCATGACCTCTCTTCTCCTCCCTG 196
Query 337 ACAGACATGGAAAACAAGACGATGTTGTTCTTGGATTTGATACTGTTGATGGTTACAAGA 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 ACAGACATGGAAAACAAGACGATGTTGTTCTTGGATTTGATACTGTTGATGGTTACAAGA 256
Query 397 ATGATACAACATATTTTGGAGCAATTGTGGGAAGAGTGGCTAATAGAATAGGAGGTGCTA 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 ATGATACAACATATTTTGGAGCAATTGTGGGAAGAGTGGCTAATAGAATAGGAGGTGCTA 316
Query 457 AATTCAAGTTAAATGGTCATCTCTACAAAACCGATCCCAACGAAGGCCGTAACACTCTCC 516
|||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 317 AATTCAAGTTGAATGGTCAACTCTACAAAACCGATCCCAACGAAGGCCATAACACTCTCC 376
Query 517 ATGGTGGTTCAAAGGGATTTAGTGATGTGATTTGGTCAGTCCAAAAGTATGTTCCCACTA 576
|||||||| |||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 377 ATGGTGGTACAAAAGGATTTAGTGATGTGATTTGGTCAGTCCAAAACTACGTTCCCACTA 436
Query 577 GTCACATTACTTTCACATACGATAGCTTCGACGGTGAAGAAGGTTTTCCGGGCAATGTGA 636
|||||||||||||||||||| |||||||||| |||||||||||||||||||| || ||||
Sbjct 437 GTCACATTACTTTCACATACAATAGCTTCGATGGTGAAGAAGGTTTTCCGGGGAACGTGA 496
Query 637 CGGTGAAAGTGACGTACATGTTGATCGGAGAAAACAAACTCGGTGTAAAAATGGAAGCAA 696
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 497 CGGTGAAAGTGACGTACATGTTGATCGGAGAAAACAAACTCGGCGTAAAAATGGAAGCAA 556
Query 697 AGCCACTCAACAAACCTACACCAATCAACTTAGCTCTCCACACTTACTGGAACCTCCACA 756
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 AGCCACTCAACAAACCAACACCAATCAACTTAGCTCTCCACACTTACTGGAACCTCCACA 616
Query 757 GCCACAACTCCGG-GAACATCCTCTCCCACAAAATTCAACTCCTCGCCGGAAAAATCACT 815
||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 617 GCCACAACTCCGGCGA-CATCCTCTCCCACAAAATCCAACTCCTCGCCGGAAAAATCACT 675
Query 816 CCCGTCGACGACAAACTCATTCCCACCGGAGAAATCACCTCCATTACCGGAACTCCTTAC 875
|| |||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||
Sbjct 676 CCAGTCGACGACAAACTCATTCCCACCGGCGAAATCACCCCCATAACCGGAACTCCTTAC 735
Query 876 GATTTCCTCGAGCCACGTGAGATCGGTAGCCGGATCCACGAATTACCCGGCGGTTACGAC 935
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 736 GATTTCCTCGAGCCACGCGAGATCGGAAGCCGAATCCACGAATTACCCGGCGGTTACGAC 795
Query 936 ATCAATTACGTGATCGACGGACCGATCGGGAAACATCTGAGGAAAACTGCGGTTGTGACG 995
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 ATCAATTACGTCATCGACGGACCGATCGGGAAACATCTGAGGAAAACTGCGGTTGTGACG 855
Query 996 GAGCAAGTCACCGGGAGGAAGATGGAGCTGTGGACGAATCAGCCTGGTGTTCAGTTTTAC 1055
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GAGGAAGTCACCGGGAGGAAGATGGAGCTGTGGACGAATCAGCCTGGTGTTCAGTTTTAC 915
Query 1056 ACGAGTAATATGATGAAACGTGTCGTCGGTAAAGGTAAAGCCGTTTATGAGAAATACGGT 1115
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 916 ACGAGTAATATGATGACACGTGTCGTCGGAAAAGGTAAAGCCGTTTATGAGAAATACGGT 975
Query 1116 GGCTTGTGTTTGGAGACTCAAGGCTTCCCAGATTCCGTCAATCACAAGAACTTTCC-GTC 1174
||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 976 GGCTTGTGTCTGGAGACGCAAGGCTTCCCAGATTCCGTCAATCACAAGAA-TTTCCCGTC 1034
Query 1175 GCAGATTGTTAATCCCGGCGAGAGTTATTTGCATGTTATGCTCTTCAGATTCACTGCTCA 1234
||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1035 GCAGATTGTGAATCCAGGCGAGAGTTATTTGCATGTTATGGTCTTCAGATTCACTGCTCA 1094
Query 1235 CTAAtcgggtcgggtcgggt 1254
||||||||||||||||||||
Sbjct 1095 CTAATCGGGTCGGGTCGGGT 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54011967410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5