BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47810.2
Length=1289
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937525 jgi|Araly1|937525|scaffold_501716.1 977 0.0
> Ahg937525 jgi|Araly1|937525|scaffold_501716.1
Length=613
Score = 977 bits (529), Expect = 0.0
Identities = 582/608 (96%), Gaps = 2/608 (0%)
Strand=Plus/Plus
Query 576 GTGAAAGTTTTGAAATGGTGCTGGTATTGGCATTGGGGGATCTCCATGTACCCCATAGAG 635
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 GTGAAAG-TTTGAAATGGTGCTGGTATTGGCATTGGGGGATCTCCATGTACCCCATAGAG 66
Query 636 CGGCTGATCTACCTCCTAAGTTCAAATCAATGCTTGTTCCTGGGAAGATTCAACACATCA 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 CGGCTGATCTACCTCCTAAGTTCAAATCAATGCTTGTTCCTGGGAAGATTCAACACATCA 126
Query 696 TCTGCACTGGAAATCTCTGCATCAAAGAAATCCATGACTACTTGAAGACTATCTGCCCTG 755
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 127 TCTGCACTGGAAATCTCTGCATTAAGGAAATCCATGACTACTTGAAGACTATCTGCCCTG 186
Query 756 ATTTGCATATAGTTCGAGGGGAGTTTGACGAAGATGCGCGATACCCTGAGAATAAAACCT 815
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 187 ATTTGCATATAGTTCGAGGGGAGTTTGACGAAGATGCACGATACCCTGAGAACAAAACCT 246
Query 816 TGACTATTGGGCAATTCAAGCTGGGATTGTGTCATGGCCACCAGGTGATCCCATGGGGTG 875
||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 247 TGACTATCGGGCAATTCAAGCTGGGACTGTGTCACGGCCACCAGGTGATCCCATGGGGTG 306
Query 876 ATCTAGACTCACTCGCCATGCTTCAGAGACAACTGGGCGTCGACATTCTCGTAACAGGCC 935
||||||||||||||||||||||||| |||||||| ||||| ||||| || ||||||||||
Sbjct 307 ATCTAGACTCACTCGCCATGCTTCAAAGACAACTCGGCGTGGACATACTTGTAACAGGCC 366
Query 936 ATACCCACCAGTTCACAGCGTACAAACACGAGGGAGGAGTGGTGATAAACCCGGGCTCTG 995
||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 367 ATACCCACCAGTTCACAGCCTACAAACATGAGGGAGGAGTGGTGATAAACCCGGGATCTG 426
Query 996 CAACCGGAGCTTACAGCAGCATAAACCAAGACGTTAACCCAAGCTTTGTCCTTATGGACA 1055
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 427 CAACCGGAGCTTATAGCAGCATAAACCAAGATGTTAACCCAAGCTTTGTTCTTATGGACA 486
Query 1056 TCGATGGTTTCCGAGCTGTAGTCTATGTCTATGAGCTAATCGATGGAGAAGTTAAAGTCG 1115
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 487 TCGATGGTTTCCGAGCTGTAGTCTATGTCTATGAGCTAATCGATGGGGAAGTTAAAGTCG 546
Query 1116 ACAAGATCGAGTTCAAGAAGCCCCCTACTACCAGCTCTGGTCCGTAGTTCCTTaaaaaaa 1175
||||||||||||||||||||||||||||||||| ||||| ||| |||||| |||||||||
Sbjct 547 ACAAGATCGAGTTCAAGAAGCCCCCTACTACCAACTCTGCTCCTTAGTTCATTAAAAAAA 606
Query 1176 aaCTTAAA 1183
||||||
Sbjct 607 C-CTTAAA 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48187367088
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5