BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47820.1
Length=1733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485145 jgi|Araly1|485145|fgenesh2_kg.5__1137__AT3G47820.1 2375 0.0
Ahg945187 jgi|Araly1|945187|scaffold_701416.1 1229 0.0
> Ahg485145 jgi|Araly1|485145|fgenesh2_kg.5__1137__AT3G47820.1
Length=1544
Score = 2375 bits (1286), Expect = 0.0
Identities = 1462/1547 (95%), Gaps = 12/1547 (1%)
Strand=Plus/Plus
Query 5 CTATGCCACAACACAACAGCCCCGGCGAAACTCCAACAGAGTTCCTCTGTCCCATCACCG 64
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 1 CTATGCCACAACACAACAGCCCCGGCGAAACCCCGACGGAGTTCCTCTGTCCCATCACCG 60
Query 65 GCTTTTTGATGTCAGACCCCGTCGTCGTCGCTTCTGGTCAAACATTTGAACGTATCTCCG 124
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 61 GATTTTTGATGTCAGACCCAGTCGTCGTCGCTTCAGGTCAAACATTTGAACGTATCTCCG 120
Query 125 TCCAAGTTTGCCGGAATCTCAGTTTTGCTCCAAAGCTTCACGACGGAACTCAACCAGATT 184
|||||||||| ||||||||| | ||||| || ||||||||||||||||||||||| ||||
Sbjct 121 TCCAAGTTTGTCGGAATCTCGGATTTGCACCGAAGCTTCACGACGGAACTCAACCTGATT 180
Query 185 TATCCACCGTAATCCCAAATCTCGCCATGAAATCAACAATTTTAAGCTGGTGCGATCGGA 244
||||||| ||||||||||||||||||||||||||||||||| | |||||||||||| | |
Sbjct 181 TATCCACTGTAATCCCAAATCTCGCCATGAAATCAACAATTCTCAGCTGGTGCGATAGAA 240
Query 245 ACAAAATGGAACATCCTCGTCCTCCTGATTACGCTTACGTCGAAGGTGTTGTTCGTACCC 304
|||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 241 ACAAAATGGAGCATCCTCGTCCTCCTGATTACGCTTACGTTGAAGGTGTGGTTCGTACCC 300
Query 305 GAATGGATTCACTTCCTCCGGGTTCGGGTCATCGGATCGCTAAATCCGAAATCTTACCAC 364
||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |
Sbjct 301 GAATGGATTCAAGTCCTCCGGGTACGGGTCATCGGATCGCTAAATCGGAAATCTTACCTC 360
Query 365 CGGTGGCTGAGAATTCAAATTC-AA-----ATTCAGATTACGATTCCGTGATGGGAGCGA 418
|||||||||||||||||||||| || |||||||||| || || || ||||||||||
Sbjct 361 CGGTGGCTGAGAATTCAAATTCGAATTCGGATTCAGATTATGAATCTGTAATGGGAGCGA 420
Query 419 TTCGATCTCGTTCAAGGACTTCATTATCGTCAA-CTACTTCTCTTCCACTTCACCAAACC 477
|||| ||||||||||| |||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 421 TTCGTTCTCGTTCAAGAACTTCAATATCGTCAAGC-ACTTCTCTTCCACTTCACCAAACC 479
Query 478 CGACCCATTAATCACTCGACCCGGAT-CCAAAGCTCATTCTCTACATCGGATTATTCATC 536
|||||| |||||||||||||||| || || || |||||||||||||||||||||||||||
Sbjct 480 CGACCCGTTAATCACTCGACCCGAATCCCTAA-CTCATTCTCTACATCGGATTATTCATC 538
Query 537 TTTTCCTCCGATGTCACCGGAAGAAGAAGAGATCTACAACAAATTGA-CAAGTGTTGACA 595
||||||||||||||||||||||||||||||||||||||||||||| | | || || ||||
Sbjct 539 TTTTCCTCCGATGTCACCGGAAGAAGAAGAGATCTACAACAAATTAAGC-AGCGTAGACA 597
Query 596 CAATCGATCACGAGCAAGGTCTGATTCAGCTAAGGAAGACGACGAGATCAAACGAGACCA 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 598 CAATCGATCACGAGCAAGGTCTGATTCAGCTAAGGAAGACGACGAGATCAAACGAGAGCA 657
Query 656 CGAGAATCTCTCTTTGTACTGATCGGATTCTCTCATTACTCCGATCTCTGATCGTTTCAC 715
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CGAGAATCTCTCTTTGCACTGATCGGATTCTCTCATTACTCCGATCTCTGATCGTTTCAC 717
Query 716 GGTACAACATCGTGCAAACAAACGCCGCCGCGTCGATTGTTAATCTCTCGTTAGAGAAAC 775
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 718 GGTACAACATCGTGCAAACAAACGCCGCCGCATCGATTGTTAATCTCTCGTTAGAGAAAC 777
Query 776 CTAACAAATTGAAAATCGTACGGTCAGGATTCGTTCCTTTGTTGATTGATGTTTTGAAAT 835
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 778 CTAACAAATTGAAAATCGTACGGTCAGGATTCGTTCCTTTGTTGATCGATGTTTTGAAAT 837
Query 836 CGGGATCAACGGAGGCGCAAGAGCATGTAATCGGAGCTTTGTTTAGTTTAGCGGTTGAAG 895
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 838 CGGGATCAACGGAGGCGCAAGAACATGTAATCGGAGCTTTGTTTAGTTTAGCGGTTGAGG 897
Query 896 AAGAGAACAAGATGGTGATCGGAGTTCTTGGTGCGGTGGAGCCGCTTCTTCACGCGCTTC 955
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 898 AAGAGAACAAGATGGTGATCGGGGTTCTTGGTGCGGTGGAGCCGCTTCTTCACGCGCTTC 957
Query 956 GTTCATCGGAGAGTGAGAGAGCTCGTCAAGACGCGGCGCTTGCGCTTTATCATTTGTCGT 1015
| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 958 GATCATCGGAGAGTGAGAGAGCGCGTCAAGACGCGGCGCTTGCGCTTTATCATCTGTCGT 1017
Query 1016 TGATTCCGAATAACCGAAGTAGGCTGGTTAAAGCCGGTGCAGTGCCGATGATGCTGTCTA 1075
|||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1018 TGATTCCGAATAACCGAATTAGGCTGGTTAAAGCCGGTGCGGTGCCGATGTTGCTGTCTA 1077
Query 1076 TGATCAGATCCGGTGAATCGGCGAGCAGGATTCTTTTATTACTGTGTAATCTGGCGGCTT 1135
|||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||||
Sbjct 1078 TGATCAGATCCGGTGAATCGGCGAGCCGGATTCTTTTGTTACTATGTAATCTTGCGGCTT 1137
Query 1136 GTTCGGAAGGAAAAGGTGCGATGCTTGACGGGAATGCGGTGTCGATACTGGTTGGGAAAT 1195
|||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1138 GTTCGGAAGGGAAAGGAGCGATGCTTGACGGGAACGCGGTGTCGATACTGGTCGGGAAAT 1197
Query 1196 TGCGAGAAAGTGGAGGAGCTGAGTCAGACGCGGCGGCGCGTGAGAATTGCGTCGGGGCTT 1255
|||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1198 TGCGAGAAGGTGGAGGAGGAGAGTCAGACGCGGCGGCGCGTGAGAATTGCGTTGGGGCTT 1257
Query 1256 TGTTGACGTTGAGTGTAGGGAATATGAGGTTTAGAGGATTGGCGAGTGAGGCGGGTGCGG 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TGTTGACGTTGAGTGTAGGGAATATGAGGTTTAGAGGATTGGCGAGTGAGGCGGGTGCGG 1317
Query 1316 AGGAGATTTTGACGGAAATTGTGGAGAGCGAGAGCGGAAGCGGGCGGTTGAAGGAGAAAG 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AGGAGATTTTGACGGAAATTGTGGAGAGCGAGAGCGGAAGCGGGCGGTTGAAGGAGAAAG 1377
Query 1376 CTTCAAAGATTCTACAGACATTGAGAGGCGGAGGGAGTGAATTCGGTGAAGGAGCGGAGG 1435
| |||||||||| ||| |||||||||||||||||| ||| || || ||||| |||||||
Sbjct 1378 CGGCAAAGATTCTGCAGGCATTGAGAGGCGGAGGGAATGATTTTGGAGAAGGTGCGGAGG 1437
Query 1436 CGCGTGAGTGGAACCGTATGTTGGAAGCGAGTGGGCTAAGTCGTTCTCAGTTTCAACAAG 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CGCGTGAGTGGAACCGTATGTTGGAAGCGAGTGGGCTAAGTCGTTCTCAGTTTCAACAAG 1497
Query 1496 GAGGGCAAAAAGGGGGTTTTGCTTATTCCTCTCAGttttagctctat 1542
||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1498 GAGGGCAAAAAGGGGGTTTCGCTTATTCCTCTCAGTTTTAGCTCTAT 1544
> Ahg945187 jgi|Araly1|945187|scaffold_701416.1
Length=1129
Score = 1229 bits (665), Expect = 0.0
Identities = 802/866 (93%), Gaps = 17/866 (2%)
Strand=Plus/Plus
Query 33 AACTCCAACAGAGTTCCTCTGTCCCATCACCGGCTTTTTGATGTCAGACCCCGTCGTCGT 92
|||||| ||||||||||| || ||||||||||| || |||||||||||||| ||||| ||
Sbjct 143 AACTCCGACAGAGTTCCTTTGCCCCATCACCGGATTCTTGATGTCAGACCCAGTCGTTGT 202
Query 93 CGCTTCTGGTCAAACATTTGAACGTATCTCCGTCCAAGTTTGCCGGAATCTCAGTTTTGC 152
|||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 203 CGCTTCAGGTCAAACATTTGAACGTATCTCCGTCCAAGTTTGTCGGAATCTTGGGTTTGC 262
Query 153 TCCAAAGCTTCACGACGGAACTCAACCAGATTTATCCACCGTAATCCCAAATCTCGCCAT 212
||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 263 TCCGAAGCTTCACGACGGAACTCAACCTGATTTATCCACTGTAATCCCAAATCTCGCCAT 322
Query 213 GAAATCAACAATTTTAAGCTGGTGCGATCGGAACAAAATGGAACATCCTCGTCCTCCTGA 272
||||||||||||| | |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 323 GAAATCAACAATTCTCAGCTGGTGCGATAGAAACAAAATGGAACATCCTCGTCCTCCTGA 382
Query 273 TTACGCTTACGTCGAAGGT-GT-T-GTTCGTACCCGAATGGATTC-ACTTCCTCCGGGTT 328
|||||||||||| |||||| || | ||||||||||| ||| |||| | |||||||||||
Sbjct 383 TTACGCTTACGTTGAAGGTGGTGTGGTTCGTACCCGTATGAATTCGA-TTCCTCCGGGTA 441
Query 329 CGGGTCATCGGATCGCTAAATCCGAAATCTTACCACCGGTGGCTGAGAATTCAAATTC-A 387
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 442 CGGGTCATCGGATCGCTAAATCGGAAATCTTACCTCCGGTGGCTGAGAATTCAAATTCGA 501
Query 388 A-----ATTCAGATTACGATTCCGTGATGGGAGCGATTCGATCTCGTTCAAGGACTTCAT 442
| |||||||||| || || || |||||||||||||||||||||||||| ||||||
Sbjct 502 ATTCGGATTCAGATTATGAATCTGTAATGGGAGCGATTCGATCTCGTTCAAGAACTTCAA 561
Query 443 TATCGTCAA-CTACTTCTCTTCCACTTCACCAAACCCGACCCATTAATCACTCGACCCGG 501
||||||||| | ||||||||||||||| |||||||||||||| ||||||||||||||| |
Sbjct 562 TATCGTCAAGC-ACTTCTCTTCCACTTTACCAAACCCGACCCGTTAATCACTCGACCCAG 620
Query 502 ATCCAAAG-CTCATTCTCTACATCGGATTATTCATCTTTTCCTCCGATGTCACCGGAAGA 560
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 ATCC-AAGACTCATTCTCTACATCGGATTATTCATCTTTTCCTCCGATGTCACCGGAAGA 679
Query 561 AGAAGAGATCTACAACAAATTGA-CAAGTGTTGACACAATCGATCACGAGCAAGGTCTGA 619
||||||||||||||||||||| | || | || ||||||||||||||||||||||||||||
Sbjct 680 AGAAGAGATCTACAACAAATTAAGCA-GCGTAGACACAATCGATCACGAGCAAGGTCTGA 738
Query 620 TTCAGCTAAGGAAGACGACGAGATCAAACGAGACCACGAGAATCTCTCTTTGTACTGATC 679
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 739 TTCAGCTAAGGAAGACGACGAGATCAAACGAGGGCACGAGAATCTCTCTTTGCACTGATC 798
Query 680 GGATTCTCTCATTACTCCGATCTCTGATCGTTTCACGGTACAACATCGTGCAAACAAACG 739
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 GGATTCTCTCGTTACTCCGATCTCTGATCGTTTCACGGTACAACATCGTGCAAACAAACG 858
Query 740 CCGCCGCGTCGATTGTTAATCTCTCGTTAGAGAAACCTAACAAATTGAAAATCGTACGGT 799
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 CCGCCGCATCGATCGTTAATCTCTCGTTAGAGAAACCTAACAAATTGAAAATCGTACGGT 918
Query 800 CAGGATTCGTTCCTTTGTTGATTGATGTTTTGAAATCGGGATCAACGGAGGCGCAAGAGC 859
|||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| |
Sbjct 919 CAGGATTCGTTCCTTTATTGATCGATGTTTTGAAATCGAGATCAACGGAGGCGCAAGAAC 978
Query 860 ATGTAATCGGAGCTTTGTTTAGTTTA 885
||||||||||||||||||||||||||
Sbjct 979 ATGTAATCGGAGCTTTGTTTAGTTTA 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65020048215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5