BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47830.1
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897624 jgi|Araly1|897624|Al_scaffold_0005_1590 1225 0.0
> Ahg897624 jgi|Araly1|897624|Al_scaffold_0005_1590
Length=885
Score = 1225 bits (663), Expect = 0.0
Identities = 810/881 (92%), Gaps = 10/881 (1%)
Strand=Plus/Plus
Query 1 ATGAGTAAAGCCCA-AAAACGGAAACGCCTAAACAAATACGACGGCGAATCAAAAACTCC 59
|||||||||||||| |||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 1 ATGAGTAAAGCCCAGAAAA-GGAAACGCCTAAACCAAGACGACGGCGAATCAAAAACTCC 59
Query 60 GGCCAATAAATCAACCGTCGACGGCGGCAATCCTTACCCTACACTACTTAGACCTACCGC 119
| ||| |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 60 GTCCATTAAATCCACCGTCGACGGCGGCAACCCTTACCCTACACTTCTTAGACCTACCGC 119
Query 120 TGAAGAATGCCGAGACGTAAGGGATGCTTTGTTGTCTCTCCATGGATTCCCTCCCGAATT 179
|||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 120 TGAAGAGTGCCGAGAAGTAAGAGATGCTTTGTTGTCTCTCCATGGATTCCCTCCAGAGTT 179
Query 180 CGCTAATTACCGCCGTCAAAGACTCCGATCATTCTCCGCCGTCGATGATCACGATACACA 239
||| |||||||| ||||| |||||||||||| ||||||||||||||| ||||||||||||
Sbjct 180 CGCCAATTACCGTCGTCAGAGACTCCGATCACTCTCCGCCGTCGATGGTCACGATACACA 239
Query 240 GTGTAATCTGAAATCTGAGACATTGAATGAAACGGAAGAGGAGAGTGTACTTGATGGGCT 299
|||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 240 ATGTACGATGAAATCTGAGCCATTGGATGAAGCGGAAGAGGAGAGTGTACTTGATGGCCT 299
Query 300 TGTTAAGATTCTTCTCTCGCAGAATACAACTGAGAGCAATTCCCAAAGGGCTTTTGCTTC 359
||||| |||||||| || ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 300 GGTTAAAATTCTTCTTTCTCAGAACACAACTGAGAGCAATTCTCAAAGGGCTTTTGCTTC 359
Query 360 TCTTAAAGCTACATTTCCGAAATGGGATGACGTTTTGAATGCTGAGTCTAAATCAATTGA 419
|||||||||| |||||||||| ||||| || |||||| ||||||||| |||||||||||
Sbjct 360 TCTTAAAGCTGCATTTCCGAATTGGGAAGATGTTTTGGCTGCTGAGTCCAAATCAATTGA 419
Query 420 GAATGCTATAAGATGTGGAGGATTGGCACCGAAAAAGGCGGTGTGTATCAAGAACATATT 479
|| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 420 GAGTGCTATAAGATGTGGAGGATTGGCCCCGAAAAAGGCGGTGTGTATCAAGAATATATT 479
Query 480 GAACCGTTTGCAGAACGAAAGAGGTAG-ATTGTGCTTGGAGTATCTGCGAGGTTTATCGG 538
||||||||||||||| |||||||| || | ||||||||||||||||||| ||||||||||
Sbjct 480 GAACCGTTTGCAGAAAGAAAGAGG-AGTACTGTGCTTGGAGTATCTGCGCGGTTTATCGG 538
Query 539 TCGAAGAAGTAAAAACCGAGCTCTCTCATTTTAAAGGAGTAGGACCTAAAACGGTTTCTT 598
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 539 TCGAAGAAGTAAAAACTGAGCTCTCTCATTTTAAAGGAATAGGACCTAAAACGGTTTCTT 598
Query 599 GTGTTCTGATGTTCAATCTCCAGCACAATGATTTCCCAGTAGACACTCATGTGTTTGAGA 658
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 GTGTTCTGATGTTCAATCTCCAGCACAATGATTTCCCAGTAGACACCCATGTGTTTGAGA 658
Query 659 TCGCAAAGGCGTTAGGTTGGGTTCCGAAAACCGCAGACAGGAACAAAACGTATGTTCATC 718
||||||||||| |||||||||| || ||||||||||||||||||||||| || |||||||
Sbjct 659 TCGCAAAGGCGGTAGGTTGGGTCCCCAAAACCGCAGACAGGAACAAAACCTACGTTCATC 718
Query 719 TCAACCGCAAGATCCCTGATGAGCTCAAGTTTGATCTGAACTGTCTGTTATATACACATG 778
||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 719 TCAACCGCAGGATCCCGGATGAGCTCAAGTTTGATCTGAACTGTCTGTTATATACGCATG 778
Query 779 GTAAGATCTGCAGCAATTGCAAGAAGAATGTTGCTAAACCAAAAGCTAAAG-T-G-G--- 832
||||| ||||||||||||||||||||| |||||||||||||||||| |||| | | |
Sbjct 779 GTAAGCTCTGCAGCAATTGCAAGAAGACTGTTGCTAAACCAAAAGCAAAAGCTAGAGTGG 838
Query 833 CATCTCCTGATGATTGCCCTCTTGTTGGTTTTTATGATTTA 873
||||||||||||| ||||||||||| ||||||| |||||||
Sbjct 839 CATCTCCTGATGAATGCCCTCTTGTGGGTTTTTCTGATTTA 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32671339869
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5