BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G47833.1

Length=691
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937528 jgi|Araly1|937528|scaffold_501719.1                        503    7e-142


> Ahg937528 jgi|Araly1|937528|scaffold_501719.1
Length=335

 Score =  503 bits (272),  Expect = 7e-142
 Identities = 317/338 (94%), Gaps = 6/338 (2%)
 Strand=Plus/Plus

Query  79   ATTTTGGCTCCTCATCGGAAATGGCGTTTTTACTCAACACCTCGATTTCATCTCACCTCC  138
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  1    ATTTTGGCTCCTCATCGGAAATGGCGTTTTTACTCAACACCTCGATTTCGTCTCACCTCC  60

Query  139  GATCTTCTTCCCAGAAGACGGATGGTGCTTTAGCTCAATCCCGTCGCGGGTTCCATGTGG  198
            |||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct  61   GATCTTCTTCACAGAAGACTGATGGTGCTTTAGCTCAATCCCGTCGTGGGTTCCATGTGG  120

Query  199  AGCTAGGTGCTCGTGAGAAAGCTCTCTTGGCTGAGGATGCATCTTTGAGGAGATTCAAGT  258
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  121  AGCTAGGTGCTCGTGAGAAAGCTCTCTTGGCTGAGGATTCATCTTTGAGGAGATTCAAGT  180

Query  259  CGCATAAGAAAGGTGTTCATAGATTGAAAAGAATTGGAGATGTGCTCACAGTTGTCGTTG  318
            ||||||||||||| || ||  ||||||| || ||||||||||||||||||||||| ||||
Sbjct  181  CGCATAAGAAAGGCGTGCACCGATTGAAGAGGATTGGAGATGTGCTCACAGTTGTTGTTG  240

Query  319  TCGCTGGATGCTGCTATGAGATCTATGCGAGAGT---GATGAGAAAGGAAGCTCAGGCTG  375
            | |||||||||||||||||||||||||| |||||   |||||||||||| ||||||||||
Sbjct  241  TTGCTGGATGCTGCTATGAGATCTATGCAAGAGTAATGATGAGAAAGGACGCTCAGGCTG  300

Query  376  CATGAGGAAGCTCATGAGTTTCTTTATCTCCCTTTTTA  413
            || | | |||||||||||||||||||||||||||||||
Sbjct  301  CA-G-G-AAGCTCATGAGTTTCTTTATCTCCCTTTTTA  335



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25389862722


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5