BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G47836.1

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg897626 jgi|Araly1|897626|Al_scaffold_0005_1592                    294    3e-79


> Ahg897626 jgi|Araly1|897626|Al_scaffold_0005_1592
Length=174

 Score =  294 bits (159),  Expect = 3e-79
 Identities = 170/175 (97%), Gaps = 2/175 (1%)
 Strand=Plus/Plus

Query  20   ATGGGGATAGTGACTAGAGCCGGAGATTGGTCGTTCAAGGCTTTCACGGCGGGGCTAGGG  79
            |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct  1    ATGGGGATAGTGACTAGAGCTGGAGATTGGTCGTTTAAGGCTTTCACGGCGGGGCTAGGG  60

Query  80   CTCGCCACCATCTACCTCACC-GCTACTTTCTCCTTTAATGTCTATCGTGGTCTCTCTTG  138
            ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct  61   CTCGCCACCATCTACCTCACCGGC-ACTTTCTCCTTTAATGTCTATCGTGGTCTCTCTTG  119

Query  139  GCACAACGCTCAATCTAAGCTGGAGATTGAGGAATCTGAAGAACAACCCGAATGA  193
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  120  GCACAACGCTCAATCTAAGCTGGAGATAGAGGAATCTGAAGAACAACCCGAATGA  174



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14346501464


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5