BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47840.1
Length=2121
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937531 jgi|Araly1|937531|scaffold_501722.1 3169 0.0
Ahg951596 jgi|Araly1|951596|scaffold_803483.1 1387 0.0
> Ahg937531 jgi|Araly1|937531|scaffold_501722.1
Length=2143
Score = 3169 bits (1716), Expect = 0.0
Identities = 1992/2124 (94%), Gaps = 24/2124 (1%)
Strand=Plus/Plus
Query 1 ATGATTTCGAGTGTGAGAAATTGCGGCACAATCCAACGGTTTTGTACAACTTCGATTTCA 60
||||||| ||||||||||||| |||||||||||||||||||||||||| |||| ||||||
Sbjct 21 ATGATTTTGAGTGTGAGAAATGGCGGCACAATCCAACGGTTTTGTACAGCTTCCATTTCA 80
Query 61 TTGCTCCAGAAACCGGTTGAGGAGAACATTGTCCGTATCTCGAATCAGGTGATGGTCAAA 120
|||||| ||||||| | | |||| | | | | || | ||| | | |||||| |
Sbjct 81 TTGCTCGAGAAACCAG-T--GGAG-A-A------G-A-CT--ATTCA-G-G-TGGTCACA 122
Query 121 TTTGATCCCAACTCTCACCTTA-GGAGTCTCATCAATGCAGGGAATTTGCGAGCTGCTCG 179
|||||| |||||||||||| || | |||||||||||||| ||||||||||| | ||||||
Sbjct 123 TTTGATACCAACTCTCACC-TACGAAGTCTCATCAATGCCGGGAATTTGCGTGTTGCTCG 181
Query 180 CCAAGTGTTCGATAAAATGCCCCACGGAGATATTGTTTCATGGACATCCATCATTAAAAG 239
||||||||| |||| |||||| ||| |||||||||||||||||||| | ||||||||| |
Sbjct 182 CCAAGTGTTTGATAGAATGCCACACAGAGATATTGTTTCATGGACAGCTATCATTAAAGG 241
Query 240 ATACGTAACTGCAAACAACTCTGACGAAGCACTGATTTTGTTCTCCGCAATGCGTGTTGT 299
|||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||
Sbjct 242 ATACGTAACTGCAAACAATTCTGACGAAGCAATGATTTTGTTCTCTGCAATGCGTGTTGT 301
Query 300 TGATCATGCCGTCTCACCTGATACCTCTGTGCTAAGTGTTGTACTCAAGGCTTGTGGTCA 359
||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 302 TGATCCTGCTGTCTCACCTGATACCTCTGTGGTAAGTGTTGTACTCAAGGCTTGTGGTCA 361
Query 360 AAGCTCCAATATTGCATATGGAGAATCTTTGCATGCTTATGCGGTGAAAACTTCGCTTCT 419
||| ||||| ||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 362 AAGTTCCAACATTTCATATGGAGAATCTTTACATGCTTATGCGGTGAAAACATCGCTGCT 421
Query 420 CAGCTCTGTATATGTGGGAAGTTCTTTACTGGATATGTATAAGAGAGTTGGAAAGATTGA 479
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 422 TAGCTCTGTATTTGTGGGAAGTTCTTTACTGGATATGTATAAGAGAGTTGGAAAGATCGA 481
Query 480 TAAGAGTTGCAGAGTCTTTAGCGAAATGCCTTTTAGAAATGCTGTAACATGGACAGCGAT 539
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 482 GAAGAGTTGCAGAGTTTTTAGTGAAATGCCTTTTAGAAATGCTGTAACATGGACAGCGAT 541
Query 540 TATTACGGGGTTGGTTCACGCTGGTCGTTACAAGGAAGGTCTTACGTACTTTTCTGAAAT 599
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 CATAACAGGGTTGGTTCACGCTGGTCGTTACAAGGAAGGTCTTACGTACTTTTCTGAAAT 601
Query 600 GTCGAGATCGGAAGAACTATCTGATACTTAT-ACATTTGCTATTGCCTTGAAGGCTTGTG 658
|||||| || ||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 602 GTCGAGCTCCGAAGAACTATCTGATACTT-TCACATTTGCTATTGCCTTGAAGGCTTGTG 660
Query 659 CTGGTTTACGTCAAGTTAAATATGGTAAGGC-GATTCATACTCATGTGATAGTGAGAGGC 717
|||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||
Sbjct 661 CTGGTTTACGTCAAGTTAAATACGGTAA-ACAGATTCATACTCATGTGATAGTGAGAGGC 719
Query 718 TTTGTTACCACTCTTTGCGTGGCTAACTCACTCGCGACAATGTACACTGAATGTGGGGAA 777
|||| | ||||| |||| ||||||||||| | |||||||||||||| ||||||||||||
Sbjct 720 TTTGATGCCACTGTTTGGGTGGCTAACTCGTTGGCGACAATGTACACAGAATGTGGGGAA 779
Query 778 ATGCAGGACGGACTTTGTTTGTTTGAAAATATGAGTGAGAGGGATGTGGTTTCGTGGACA 837
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATGCGGGACGGACTTTGTTTGTTTGAAAATATGAGTGAGAGGGATGTGGTTTCGTGGACA 839
Query 838 AGCCTTATTGTGGCTTACAAGCGAATCGGTCAAGAAGTAAAAGCTGTGGAGACATTTATA 897
|||||||| ||||||||||| ||||| ||||| |||| ||||||||||||||||||||||
Sbjct 840 AGCCTTATCGTGGCTTACAATCGAATAGGTCATGAAGAAAAAGCTGTGGAGACATTTATA 899
Query 898 AAGATGAGAAATTCTCAAGTCCCTCCTAATGAACAAACTTTTGCATCAATGTTTTCTGCG 957
|||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||
Sbjct 900 AAGATGAGAAATTCTCAAGTACCTCCTAATGAACAAACTTTTGCAACGATGTTTTCTGCG 959
Query 958 TGTGCGAGTCTTTCTAGACTTGTGTGGGGCGAGCAGCTCCACTGTAATGTTTTGTCTCTA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 960 TGTGCGAGTCTTTCTAGACTTGTGTGGGGCGAGCAGCTCCACTGTAATGTTTTCTCTCTA 1019
Query 1018 GGTTTAAATGATTCTTTGTCAGTGAGTAACTCGATGATGAAGATGTATTCTACATGTGGG 1077
||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1020 GGTCTAAATGATTCTTTGTCAGTGAGTAACTCGATGATGAAAATGTATTCAACATGTGGG 1079
Query 1078 AATTTAGTCTCTGCTTCTGTTTTGTTTCAAGGAATGAGATGCAGGGACATTATTTCGTGG 1137
|| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1080 AAGTTAGACTCTGCTTCTGTTTTGTTTCAAGGAATGGGATGCAGGGACATTATTTCGTGG 1139
Query 1138 AGTACCATTATTGGAGGGTACTGTCAAGCCGGTTTTGGAGAAGAAGGTTTTAAGTATTTC 1197
|| || ||||||||||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1140 AGCACGATTATTGGAGGATACTCTCAAGCCGGTTTTGGAGAAGAAGCTTTTAAGTATTTC 1199
Query 1198 TCATGGATGAGACAATCAGGGACAAAACCAACAGATTTTGCTCTTGCTAGTTTGCTGAGT 1257
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TCATGGATGAGACAAGCAGGGACAAAACCAACAGATTTTGCTCTTGCTAGTTTGCTGAGT 1259
Query 1258 GTTTCAGGAAACATGGCAGTTATTGAGGGAGGCAGGCAAGTTCACGCGCTTGCTCTTTGT 1317
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GTTTCAGGAAATATGGCAGTTCTTGAGGGAGGCAGGCAAGTTCACGCGCTTGCTCTTTGT 1319
Query 1318 TTTGGTTTAGAACAGAACTCCACGGTTCGTAGTAGTCTGATTAATATGTACTCGAAATGT 1377
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1320 TTTGGTTTAGAACAGAACTCCACGGTTCGTAGTACTCTCATTAATATGTACTCGAAATGT 1379
Query 1378 GGAAGTATCAAAGAAGCTTCAATGATATTCGGAGAAACAGATAGAGATGATATTGTTTCT 1437
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1380 GGAAATATCAAAGAAGCTTCAAAGATATTCGAAGAAACAGATAGAGATGATATTGTTTCT 1439
Query 1438 CTGACAGCTATGATCAATGGATATGCAGAACATGGAAAGAGCAAAGAAGCTATTGATCTG 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CTGACAGCTATGATCAATGGATATGCAGAACATGGAAAGAGCAAAGAAGCTATTGATCTG 1499
Query 1498 TTTGAGAAGAGTCTAAAGGTTGGTTTCAGACCCGACTCTGTAACTTTCATCAGCGTTCTC 1557
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1500 TTTGAGAAGAGTCTAAAAGTTGGTTTCAGTCCCGACTCTGTAACTTTCATCAGCGTTCTC 1559
Query 1558 ACCGCCTGCACTCATTCGGGACAGCTTGACCTTGGTTTTCACTATTTCAACATGATGCAA 1617
|||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1560 ACCGCCTGTAGTCATTCGGGACAGCTTGACCTTGGTTTTCACTATTTCAACTTGATGCAA 1619
Query 1618 GAGACGTATAATATGAGACCAGCCAAGGAACATTATGGTTGTATGGTTGATCTGTTATGT 1677
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GAGAAGTATAATATGAGACCAGCCAAGGAACATTATGGTTGTATGGTTGATCTGTTATGT 1679
Query 1678 AGAGCAGGACGGCTAAGTGATGCAGAGAAGATGATCAATGAGATGTCATGGAAGAAAGAC 1737
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1680 AGAGCAGGACGGCTAAGTGAAGCAGAGAAGATGATCGATGAGATGTCATGGAAGAAAGAC 1739
Query 1738 GATGTAGTCTGGACCACACTTCTCATTGCGTGTAAGGCCAAAGGAGACATTGAACGTGGG 1797
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1740 GATGTAGTCTGGACCACACTTCTCATAGCGTGTAAGGCCAAAGGAGACATTGAACGTGGG 1799
Query 1798 AGAAGGGCTGCTGAGAGGATTCTAGAGCTGGATCCTACTTGTGCAACTGCACTTGTAACA 1857
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 GGAAGGGCGGCCGAGAGGATTCTAGAGCTGGATCCTACTTGTGCAACTGCACTTGTAACA 1859
Query 1858 CTAGCCAATATATATTCAAGCACAGGGAACTTGGAAGAAGCTGCAAATGTAAGAAAGAAT 1917
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1860 CTAGCCAATATATATTCAAGCACAGGGAACTTGGAAGAAGCTGCGAATGTAAGGAAGAAT 1919
Query 1918 ATGAAAGCAAAAGGCGTGATCAAAGAGCCCGGATGGTCATCAATTAAGATCAAGGATTGC 1977
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1920 ATGAAAGCAAAAGGCGTGATCAAAGAGCCTGGATGGTCATCAATTAAGATCAAGGATCGC 1979
Query 1978 GTTTCAGCGTTTGTATCTGGTGATCGGTTCCATCCGCAAAGTGAAGATATATACAATATC 2037
|||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||
Sbjct 1980 GTTTCAGCGTTTGTATCTGGCGATCGGTTCCATCCTCTAAGTGAAGATATATACAATATC 2039
Query 2038 TTGGAATTAGCAGTATCTGGTGCAGAAGCTCATAGATTTGATTGCACATTAAAGAGAGCT 2097
|||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| | |
Sbjct 2040 TTGGAATTAGTAGTATCTGGTGCAGAAGCTCATAGATTTGATTGTACAATAAAGAGGGTT 2099
Query 2098 TTTGGGGTTAATTTATATTCCTGA 2121
||||||||| ||| ||||||||||
Sbjct 2100 TTTGGGGTTTATTCATATTCCTGA 2123
> Ahg951596 jgi|Araly1|951596|scaffold_803483.1
Length=2022
Score = 1387 bits (751), Expect = 0.0
Identities = 991/1106 (90%), Gaps = 20/1106 (2%)
Strand=Plus/Plus
Query 1026 TGATTCTTTGTCAGTGAGTAACTCGATGATGAAGATGTATTCTACATGTGGGAATTTAGT 1085
|||||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||
Sbjct 907 TGATTCTTTGTCAGTGAGTAACTCCATGATGAAGATGTATTCAACATGTGGCAAGTTAGA 966
Query 1086 CTCTGCTTCTGTTTTGTTTCAAGGAATGAGATGCAGGGACATTATTTCGTGGAGTACCAT 1145
||||||||||||||||||||||||||||||| |||||||||||||| ||||||| || ||
Sbjct 967 CTCTGCTTCTGTTTTGTTTCAAGGAATGAGACGCAGGGACATTATTACGTGGAGCACGAT 1026
Query 1146 TATTGGAGGGTACTGTCAAG-CCGGTTTTGGAGAAGAAGGTTTT-AAGTATTTCTCATGG 1203
|||||||||||||| || || | || || ||||||||| ||||| | || ||||||||||
Sbjct 1027 TATTGGAGGGTACTCTC-AGTCAGGATTAGGAGAAGAA-GTTTTCATGTGTTTCTCATGG 1084
Query 1204 ATGAGACAATCAGGGACAAAACCAACAGATTTTGCTCTTGCTAGTTTGCTGAGTGTTTCA 1263
||||||||| ||||| |||||||||| ||| |||||| |||||||||||||||||||||
Sbjct 1085 ATGAGACAAGCAGGGCCAAAACCAACCGATCCTGCTCTAGCTAGTTTGCTGAGTGTTTCA 1144
Query 1264 GGAAACATGGCAGTTATTGAGGGAGGCAGGCAAGTTCACGCGCTTGCTCTTTGTTTTGGT 1323
|||| |||||||||| ||||| ||||||||||||||| ||||||||||||| | |||||
Sbjct 1145 GGAACCATGGCAGTTCTTGAGCAAGGCAGGCAAGTTCATGCGCTTGCTCTTTATCTTGGT 1204
Query 1324 TTAGAACAGAACTCCACGGTTCGTAGTAG-TCTGATTAATATGTACTCGAAATGTGGAAG 1382
|||||||||||||| || |||||||| | ||||||||||||||||||||||||||||||
Sbjct 1205 TTAGAACAGAACTCTACTATTCGTAGT-GCTCTGATTAATATGTACTCGAAATGTGGAAG 1263
Query 1383 TATCAAAGAAGCTTCAATGATATTCGGAGAAACAGATAGAGATGATATTGTTTCTCTGAC 1442
|||| |||||||||||| |||||||| ||||||||||| |||||||||||||||| ||||
Sbjct 1264 TATCGAAGAAGCTTCAAAGATATTCGAAGAAACAGATACAGATGATATTGTTTCTTTGAC 1323
Query 1443 AGCTATGATCAATGGATATGCAGAACATGGAAAGAGCAAAGAAGCTATTGATCTGTTTGA 1502
||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||
Sbjct 1324 AGCTATGATCAATGGATATGCAGAACATGGAAATACCAAAGAAGCCATTGATCTGTTTGA 1383
Query 1503 GAAGAGTCTAAAGGTTGGTTTCAGACCCGACTCTGTAACTTTCATCAGCGTTCTCACCGC 1562
||| ||||||||||||||| |||| |||||| ||||||||||||| ||||||||||||||
Sbjct 1384 GAAAAGTCTAAAGGTTGGTCTCAGGCCCGACACTGTAACTTTCATTAGCGTTCTCACCGC 1443
Query 1563 CTGCACTCATTCGGGACAGCTTGACCTTGGTTTTCACTATTTCAACATGATGCAAGA-GA 1621
|| | ||||||||||||||||||||||||||||| |||||||||| |||||||||| ||
Sbjct 1444 TTGTAGTCATTCGGGACAGCTTGACCTTGGTTTTCGCTATTTCAACTTGATGCAAGACGA 1503
Query 1622 CGTATAATATGAGACCAGCCAAGGAACATTATGGTTGTATGGTTGATCTGT-TATGTAGA 1680
||||||||| ||||||| ||||||||||||||| |||||||||||||| | | ||||||
Sbjct 1504 -GTATAATATCAGACCAGTCAAGGAACATTATGGATGTATGGTTGATCT-TCTGTGTAGA 1561
Query 1681 GCAGGACGGCTAAGTGATGCAGAGAAGATGATCAATGAGATGTCATGGAAGAAAGACGAT 1740
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1562 GCAGGACGGCTAAGTGATGCAGAGAAGATGATCAATGAGATGCCATGGAAGAAGGACGAT 1621
Query 1741 GTAGTCTGGACCACACTTCTCATTGCGTGTAAGGCCAAAGGAGACATTGAACGTGGGAGA 1800
||||||||||||||||| |||| |||||||||||| |||||||||| ||||||||| |||
Sbjct 1622 GTAGTCTGGACCACACTCCTCAATGCGTGTAAGGCGAAAGGAGACACTGAACGTGGAAGA 1681
Query 1801 AGGGCTGCTGAGAGGATTCTAGAGCTGGATCCTACTTGTGCAACTGCACTTGTAACACTA 1860
||||| ||||||||||||||||||||||||||||||| | ||||||| |||||||||||
Sbjct 1682 AGGGCGGCTGAGAGGATTCTAGAGCTGGATCCTACTTCCGAAACTGCATTTGTAACACTA 1741
Query 1861 GCCAATATATATTCAAGCACAGGGAACTTGGAAGAAGCTGCAAATGTAAG-AAAGAATAT 1919
|||||||||||||||||||| ||||| ||||||||||| || ||||||| |||| ||
Sbjct 1742 GCCAATATATATTCAAGCACGGGGAAATTGGAAGAAGCAGCGCATGTAAGGAAAGCG-AT 1800
Query 1920 GAAAGCAAAAGGCGTGATCAAAGAGCCCGGATGGTCATCAATTAAGATCAAGGATTGCGT 1979
|||| |||||||||||||||||| ||| |||||||||||||||||||||| |||| | |
Sbjct 1801 GAAATCAAAAGGCGTGATCAAAGTGCCTGGATGGTCATCAATTAAGATCATGGATCGGGC 1860
Query 1980 TTCAGCGTTTGTATCTGGT-GATCGGTTCCATCCGCAAAGTGAAGATATATACAATATCT 2038
||| ||||||||||||| | ||||| |||| | ||||||||||||||||||| ||| |
Sbjct 1861 CTCAACGTTTGTATCTGGCAG-TCGGTCCCATTCACAAAGTGAAGATATATACAGTATAT 1919
Query 2039 TGGAATTAGCAGTATCTGGTGCAGAAGCTCATAGATTTGATTG-C-ACATTAAA-GAGAG 2095
|||| |||| ||||||||||||||||| ||||||||||||||| | | || ||| | |||
Sbjct 1920 TGGACTTAGTAGTATCTGGTGCAGAAGTTCATAGATTTGATTGTCGA-AT-AAATG-GAG 1976
Query 2096 CTTTTGGGGTTAATTTATATTCCTGA 2121
||||||| || ||| |||||| |||
Sbjct 1977 CTTTTGGCTTTTATTCATATTCATGA 2002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79799063275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5