BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47850.1
Length=1256
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485149 jgi|Araly1|485149|fgenesh2_kg.5__1141__AT3G47850.1 1764 0.0
> Ahg485149 jgi|Araly1|485149|fgenesh2_kg.5__1141__AT3G47850.1
Length=1256
Score = 1764 bits (955), Expect = 0.0
Identities = 1163/1262 (92%), Gaps = 19/1262 (2%)
Strand=Plus/Plus
Query 1 AGAGCAAAACGTCATGCAAGTCGAAATCCCATCGCCGTATGATCACGGAAGCAGAAGGCA 60
|||||||||||||||||||||||||||| ||||| | |||| ||||||||||||||| ||
Sbjct 1 AGAGCAAAACGTCATGCAAGTCGAAATCTCATCGTCATATGCTCACGGAAGCAGAAGACA 60
Query 61 ACGGCGAATTCGACGAACGGAAGAAACCCAAAAGCAGAAGAAGATGGTGGCGATATCTAT 120
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 61 ACGGCGAATTCGACGCACGGAAGAAACCCAAAAGCAGAAGACGATGGTGGCGATATCAAT 120
Query 121 GTACAGAGGCAACCTTCACAAAGTTCCCGACGTACCTCGCCGGTGGATAATGCCTGACCG 180
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 121 GTACAGAGGCAACCTTCACAAAGTTCCCGATGTACCTCGCCGGTGGAGAATGCCTGACCA 180
Query 181 TAATCTCTCTTTCAAGGATTTCAAATCTCTTCTTCATCGCCGTAAAAAAGCCCTTTCTCG 240
|||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||
Sbjct 181 TAATCTCTCTTTCAAGGATTTCAAATCTCTCCTTCATCGCCGTAAACGAGCCCTCTCTCG 240
Query 241 TCTCCCCC----TT--AACCCTAATTTGAACCTTAGCGTCAAGACTGAGTTGGTTACTGA 294
|||||||| || |||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 241 TCTCCCCCTTAATTCCAACCCTAATTTGAATCTCAGCGTCAAGACTGAGTTGGTTACCGA 300
Query 295 TCAGGAGAATCCAATTCTTCCATCTGAAGCGAACGGTTCTTCTGGGAAGCAGAAGCTATT 354
|||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| |
Sbjct 301 TCAGGAGAATCCGATTCTTCCATCTGAAGGGAACGCTTCTTCTGGGAAGCAGAAGCTAGT 360
Query 355 TGAGGTAAAGAGAGAGGAGATTTGTGGGAATCGGGTTAAGGGAGATGAGAACAACGACAG 414
||| || |||||||||| ||| |||||||||||||||||| ||||||||||||||||||
Sbjct 361 TGATGTGAAGAGAGAGGTGATAGGTGGGAATCGGGTTAAGGAAGATGAGAACAACGACAG 420
Query 415 AGGTTTTGAAGGAGCTCGATCAGACGGTGGAGATCGTCCCGGGAGAGTGACGGAATCAAA 474
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 421 AGGTTTTGAAGGAGCTCGATCAGACGGTGGAGATCGTCCAGGGAGAGTGACGGAATTGAA 480
Query 475 GGAAACCGATAATGTGCCACACAAGTATGCGGCCAAGGAGGAGGAGACGAATGAAGCAGC 534
|||||||||| |||||||||| ||| ||| ||| |||||||| ||| |||||||| ||||
Sbjct 481 GGAAACCGATTATGTGCCACAAAAGGATGTGGCGAAGGAGGAAGAGGCGAATGAAACAGC 540
Query 535 TGAAAAAGTACCAAGCGAGACAGAGTTAAAACGGAAAGAAGTGGAGGAGAGATTACAAGT 594
|||||||||||||||||||| |||| ||||| ||||||||| |||||||||||||||||
Sbjct 541 TGAAAAAGTACCAAGCGAGATAGAGAAAAAACAGAAAGAAGTAGAGGAGAGATTACAAGT 600
Query 595 TTTGAATGCAAAGAAACACAATCTAGTCCAAGTGCTTAAGCAGATTTTAAATGCTGAGGA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTGAATGCAAAGAAACACAATCTAGTCCAAGTGCTTAAGCAGATTTTAAATGCTGAGGA 660
Query 655 AGAATTGAAAAGACGCAGCTACATGCAACAACAAGGAACCACCGTAGCCACTCGTCCTTC 714
|||||||||||||||| ||| ||||||||| |||||||| || | ||| ||||| ||| |
Sbjct 661 AGAATTGAAAAGACGCGGCTGCATGCAACAGCAAGGAACGACAGCAGCGACTCGCCCTGC 720
Query 715 TCTTCCACTCCATGTGGATGTCTCGAATGACTCAGGAGGTAATGTTGGTACTCACATGGA 774
|||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 721 CCTTCCACTCCATGTTGATGTCTCTAATGACTCAGGAGGTAATGCTGGTACTCACATGGA 780
Query 775 AGGCGGGGAAACTGATGATGCAGCGAATCATAATAATGCTCAAACTCGTACTCTGCTTCG 834
|||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 781 AGGCGGAGAAACCGATGATGCAGCGAATCAGAATAATGCTCAAACTCGTACTGTGCTTCG 840
Query 835 ACTGTGTGGCGCTTCTTCATCATCTGAATCTCCTCTGAGAAGAGCAGCAGCCTTGTCACA 894
||||||| | |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 841 ACTGTGTCGTGCTTCTTCGTCATCTGAATCTCCTCTCAGAAGAGCAGCAGCCTTGTCACA 900
Query 895 ACACAATATGGTTCCACATACTTCTCGATGGAGCCCGC-TCGTTGGTCCTTCTCAACCCG 953
||||||||||||||| |||||||||||||||||||||| | || ||||||||||||||||
Sbjct 901 ACACAATATGGTTCCCCATACTTCTCGATGGAGCCCGCGT-GTGGGTCCTTCTCAACCCG 959
Query 954 GTCCTGCAGTCACTGTTTCTGCGTCTGGAACAAACTACATTGCTTCATCTCCTTCACCAG 1013
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 960 GTCCTGCAGTCACTGTCTCTGCATCTGGAACAAACTACATTGCTTCATCTCCTTCACCAG 1019
Query 1014 CGGGTTTTGGTGGCACTTCTGTTTTCAGAGAATCACGGCTTCAGAGTCCATGGAATTAGC 1073
| |||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1020 CTGGTTCTGGTGGCACTTCTGTTTTCAGAGAATCACGTCTTCAGAGTCCGTGGAATTAGC 1079
Query 1074 CAGCTTCTCCTATATCTTTTTGTTTTTCGTAGCTGTAACGTGTTCATATTGATTGATGTA 1133
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1080 CAGCTTCTCCTCTATCTTTTTGTTTTTCGTAGCTGTAACGTGTTCATATC-ATTGATGTA 1138
Query 1134 TAAATCAGACTCATCCATATCTTATTAGTATTACTGCAAAATGCAAAC---TA-A-TCCA 1188
||||||||||||||||||||||||||||||||| |||||||||||||| || | || |
Sbjct 1139 TAAATCAGACTCATCCATATCTTATTAGTATTATTGCAAAATGCAAACCAATATAATC-A 1197
Query 1189 TTTCTTCTTATTTTCTCAAAGGT-TCATATCTACATTGATTGTTATTGACTGAATCAGCT 1247
||| ||||| |||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 1198 TTTGTTCTTTTTTTCTCAAAGGGGTCATATCTACATTGATT---ATTGACTGAATCAGTT 1254
Query 1248 GA 1249
||
Sbjct 1255 GA 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46929310827
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5