BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47860.1
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485150 jgi|Araly1|485150|fgenesh2_kg.5__1142__AT3G47860.1 1574 0.0
> Ahg485150 jgi|Araly1|485150|fgenesh2_kg.5__1142__AT3G47860.1
Length=1185
Score = 1574 bits (852), Expect = 0.0
Identities = 1104/1217 (91%), Gaps = 52/1217 (4%)
Strand=Plus/Plus
Query 1 ATAAAAGTCTGTGGCGACCAAAAGAAGTgagagagaaagagagagaTATGATATTATTAA 60
||||||||||||||||||| || || || || | |||||||||| ||| | |||| |
Sbjct 1 ATAAAAGTCTGTGGCGACC--AA-AA--GA-AGCG-AAGAGAGAGA-ATG--A-TATT-A 48
Query 61 GTAGTAGTATAAGCCTCTCAAGACCAGTTTCTTCTCAAAGCTTCTCTCCACCTGCTGCCA 120
| ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||
Sbjct 49 --ACTAGTATAAGCCTCTCAACACCAGTTTCTTCTCAAAGGTTCTCTCCACCTCCTGCCA 106
Query 121 CTTCAACAAGGAGATCTCATTCCTCTGTCACAGTCAAGTGCTGCTGTTCTTCCAGAAGGT 180
|| |||| ||||||||||||| |||||| || | | | | ||||||||||||| |||
Sbjct 107 CTACAACGAGGAGATCTCATTTCTCTGT--CA--C-A--G-T-CTGTTCTTCCAGAGGGT 157
Query 181 TGTTGAAGAATCCTGAGTTAAAATGTTCCTTGGAGAA-TCTCTTTGAAATCCAGGCTTTG 239
||||||||||| ||||||||||||||| ||||||||| | || |||| || | |||||
Sbjct 158 TGTTGAAGAATGCTGAGTTAAAATGTTTCTTGGAGAAGCCAATTGGAAA-CCTGTCTTTG 216
Query 240 AGGAAGTGTTTTGTTTCAGGGTTTGCAGCTATTTTGCTTCTCTCTCAGGCAGGCCAGGGT 299
|| ||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 217 AGAAAGCATCTTGTTTCAGGGTTGGCAGCTATTTTGCTTCTCTCTCAGGCAGGCCAGGGT 276
Query 300 ATAGCGTTGGATCTCTCATCTGGTTATCAGAACATTTGCCAACTAGGGAGTGCTGCTGCT 359
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 277 ATTGCGTTGGATCTCTCATCTGGTTATCAGAACATTTGCCAACTAGGGAGTGCT--T-CT 333
Query 360 GTGGGAGAAAAC-AAGCTGA--C-T---CTT--C----CATCTGATGGTGACTCGGAATC 406
|||| || |||| ||||||| | | ||| | |||||||||||||||||||| |
Sbjct 334 GTGGAAG-AAACAAAGCTGACTCTTCCACTTGACAATGCATCTGATGGTGACTCGGAAGC 392
Query 407 AatgatgatgatgatgatgaGAGGCATGACTGCTAAGAACTTTGACCCTGTTAGGTACTC 466
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 393 GATGATGATGATGATGATGAGAGGCATGACTACTAAGAACTTTGACCCAGTTAGGTACTC 452
Query 467 TGGAAGATGGTTTGAAGTAGCTTCTCTTAAGCGTGGATTTGCAGGTCAAGGCCAAGAAGA 526
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 453 TGGAAGATGGTTTGAAGTAGCTTCTCTTAAGCGTGGATTTGCGGGTCAAGGCCAAGAAGA 512
Query 527 CTGTCATTGCACTCAGGGAGTATACACGTTTGATATGAAGGAATCAGCCATTAGAGTAGA 586
||||||||| || ||||| |||||| ||||||||||||||||||| |||||| |||||||
Sbjct 513 CTGTCATTGTACCCAGGGGGTATACTCGTTTGATATGAAGGAATCCGCCATTCGAGTAGA 572
Query 587 TACATTTTGTGTTCATGGCAGCCCTGATGGATATATAACAGGAATCAGAGGGAAAGTTCA 646
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 573 TACATTTTGTGTTCACGGCAGTCCTGATGGATATATAACAGGAATCAGAGGAAAAGTCCA 632
Query 647 ATGCGTGGGAGCGGAAGACCTCGAGAAAAGCGAGACTGACTTAGAAAAGCAAGAGATGAT 706
|||||| ||||||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 633 ATGCGTTGGAGCGGAAGATCTGGAGAAAAGCGAGACTGACTTAGAAAAGCGAGAGATGAT 692
Query 707 TAAAGAGAAGTGTTTCCTACGATTTCCCACCATTCCTTTTATCCCCAAGTTGCCTTATGA 766
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 693 TAAAGAGAAGTGTTTCCTACGATTTCCCACAATTCCTTTTATTCCCAAGTTGCCTTATGA 752
Query 767 TGTCATAGCCACAGACTACGACAACTACGCACTTGTTTCTGGAGCCAAAGACAAGGGCTT 826
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 753 TGTCATAGCCACTGACTACGACAACTACGCTCTTGTTTCTGGAGCCAAAGACAAGGGCTT 812
Query 827 TGTTCAGGTATACTCAAGGACGCCAAATCCAGGACCTGAGTTCATCGCAAAGTACAAGAA 886
||||||||||||||||||||| || || |||||||||||||||||||| |||||||||||
Sbjct 813 TGTTCAGGTATACTCAAGGACACCTAACCCAGGACCTGAGTTCATCGCCAAGTACAAGAA 872
Query 887 CTACTTGGCACAATTTGGCTATGACCCGGAAAAAATAAAGGATACACCACAGGACTGTGA 946
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 873 CTACTTGGCACAATTTGGCTATGACCCGGATAAAATAAAGGATACACCACAGGACTGCGA 932
Query 947 AGTGA---CTGATGCTGAGCTAGCAGCCATGATGTCCATGCCAGGTATGGAGCAAACACT 1003
||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 933 AGTGATGTCTGATGGTGAGCTAGCTGCCATGATGTCCATGCCAGGTATGGAGCAAACACT 992
Query 1004 GACCAACCAGTTTCCAGATCTTGGATTAAGAAAGTCAGTCCAGTTTGATCCCTTCACAAG 1063
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 993 GACAAACCAGTTTCCAGATCTTGGATTAAGAAAGTCGGTCCAGTTTGATCCCTTCACAAG 1052
Query 1064 TGTGTTTGAAACCTTGAAGAAACTTGTACCGCTCTATTTCAAATAGAGCAAGCTTCTTT- 1122
||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||
Sbjct 1053 TGTGTTTGAAACCTTGAAGAAACTTGTCCCGCTCTATTTCAAGTAGAGCA-GCTTCTTTT 1111
Query 1123 GCTCAAATTCTTATGTAGAC--TATAATCACTGTCCATATATACATATCTTCCAGAATCA 1180
||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||
Sbjct 1112 GCTCAAATTCTTATGTAGATGATATAATCACTGTCCTTATATACAT--CTTCCAGAATCA 1169
Query 1181 AAACACTCTTCTGATCA 1197
|| ||||||||||||||
Sbjct 1170 AA-CACTCTTCTGATCA 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45442517064
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5