BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47870.1
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347883 jgi|Araly1|347883|fgenesh1_pg.C_scaffold_5001275 1631 0.0
> Ahg347883 jgi|Araly1|347883|fgenesh1_pg.C_scaffold_5001275
Length=1092
Score = 1631 bits (883), Expect = 0.0
Identities = 1027/1095 (94%), Gaps = 15/1095 (1%)
Strand=Plus/Plus
Query 2 ATGAGCAATACAAAACACATCCACAAAGGGTTAC-AGGAGAGGCTTTTAGATCTTCTCTT 60
||||||||||||||| |||||||||||||||||| | |||||| ||||||||||||||||
Sbjct 1 ATGAGCAATACAAAAAACATCCACAAAGGGTTACTA-GAGAGGTTTTTAGATCTTCTCTT 59
Query 61 GATCGCTCTTATAGTTTACATGACTCTTAAAGGCGGCACGAGTGGGGCTTGTGCCGCGTG 120
||||||||||||| ||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 60 GATCGCTCTTATAATTTTCATGACTCTAAAAGGCGGCACGAGTGGAGCTTGTGCCGCGTG 119
Query 121 CAAGTACCAACGTAGACGCTGCGCCGCGGACTGCCCCCTCGCGCCTTACTTCCCAGCCGA 180
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 CAAGTACCAACGTAGACGATGCGCCGCGGATTGCCCCCTCGCGCCTTACTTCCCAGCCGA 179
Query 181 ACAACCGAAACTTTTCCAAAACGTTCACAGGCTATTCGGCGTAAGAAGTATCGTCAAGAT 240
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 ACAACCGAAACTCTTCCAAAACGTTCACAGGCTATTCGGCGTAAGAAGCATCGTCAAGAT 239
Query 241 CCTCGAAAAACTAGACGAAACTCAGAAACCAGAAGCAATGAAATCAATCATCTTCCAGTC 300
||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 CCTAGAAAAACTCGACGAAACTCAGAAACCAGAAGCCATGAAATCAATCATCTTCCAGTC 299
Query 301 TTATGTCCGTGACCGTTCTCCTGTCCACGGTTGCCTCGGCGTCACGCAACAACTTCAATA 360
|||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 300 TTATGTCCGTGACCGTTCTCCTGTATACGGCTGCCTCGGCGTCACGCAACAGCTTCAATA 359
Query 361 CATGATCTGGTTTGCTGAAGAAGAACTCAAAGCTGTCAATTCTCAATTACAACTATATCG 420
|||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 360 CATGATATGGCTTGCTGAAGAAGAACTCAAAGCTGTCAATTCTCAACTACAACTCTATCG 419
Query 421 CTCTCAACCACAAAACGGTCAAAATCAAAACCAAAACC---ATAATCATAATCAGATGAT 477
|||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||
Sbjct 420 CTCTCAACCACAAAACGGCCAAAATCAAAATCAAAACCATAATAATCATAATCAGATGAT 479
Query 478 TCATGAGCTTGGTAGTGATCATAATAAGCAGCAAGAAGATGTTACATCGCAGCAGCTTGA 537
||||||||||||| | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCATGAGCTTGGT-G-G-TGATAATAAGCAGCAAGAAGATGTTACATCGCAGCAGCTTGA 536
Query 538 CTTGGGTATGGGACTTAACGTTAACAATAATCAGAGCAATGTCGTTACACCATTCTTTAG 597
||||| |||||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 537 TTTGGGAATGGGACTAAACGTTCACAATAATCAGAGCAATGTTGTTACACCATTCTTTAG 596
Query 598 TTCATTATTACCAGTTTCCGAAACACAACAGCCACAAATGTCTTACACTTATAGCTGCAG 657
| ||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 597 TCCATTATTACCAGTATCTGAAACACAACAGCCACAAATGTCTTACACTTATAGTTGCAG 656
Query 658 TGAGGTTAACAACAATGGCTATAGTCCTCCTGCTTATAATACAGATTCGGGCAAGGAGAT 717
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 657 TGAGGTTAACAACAATGGCTATAGTCCTCCTGCTTACAATACAGATTCAGGCAAGGAGAT 716
Query 718 TCTGACCAACAATAACAATGTTTGGGGTGATCAGAATCGATTTCTGTATAACAACAACAA 777
|||||||||||| || ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 717 TCTGACCAACAACAATAATGTTTGGGGTGGTCAGAATCGATTTCTGTATAACGTCAACAA 776
Query 778 TGGAGGAGGATACAGCAACCAAAACGAGAGCTGTCATGAGATGAAGAG---TAACGGTGT 834
||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 777 TGGAGGAGGATTTAGCAACCAAAACGAGAGCTGTCACGAGATGAAGAGTAATAACGGTGT 836
Query 835 AATGGCAATACAATCACAGCTCGTAAATCTGCAAATGGTATCAAATCATCAGCGAGTGGA 894
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 837 AATGGCAATACAATCACAGCTCGTAAATCTGCAAATGGCATCAAATCATCAGCAAGTGGA 896
Query 895 AGAAGAAGAAGCTGATCATGAATACGATGA-ACTCCATCAGTTTCTTGATATCATTGACG 953
||||||||||| || ||||||||||||||| | |||||||||||||||| ||||||||||
Sbjct 897 AGAAGAAGAAGATGCTCATGAATACGATGAGA-TCCATCAGTTTCTTGAAATCATTGACG 955
Query 954 ATAGGCAATCATTTGGGGATTCTAAAGAAGCGTAGGCCTCAAGCTCTGGTGGATCGTTGA 1013
||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||
Sbjct 956 ATAGGCAATCATTTGCGGATTCTAAAGAAGCGTACGCGTCAAGCTCTGGTGGATCGTTGA 1015
Query 1014 AGGAACAGATTGATGAAATTGGAGAGAATGAATTGAGAAGTGCAGCTACTTG-TTTCAGT 1072
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1016 AAGAACAGATTGATGAAATTGGAGAGAATGAATTGAGAAGTGCAGCTACTTGCTTT-AGT 1074
Query 1073 CTAACCAGTGTGAAT 1087
||||||||| |||||
Sbjct 1075 CTAACCAGTATGAAT 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46128729570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5