BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47930.1
Length=2083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485156 jgi|Araly1|485156|fgenesh2_kg.5__1148__AT3G47930.1 3061 0.0
> Ahg485156 jgi|Araly1|485156|fgenesh2_kg.5__1148__AT3G47930.1
Length=1940
Score = 3061 bits (1657), Expect = 0.0
Identities = 1833/1919 (96%), Gaps = 7/1919 (0%)
Strand=Plus/Plus
Query 11 AGAACATTTCCCTCAGGTTCAGATCGCCTGAAGTTAAACaaaaaaaaTGCTCCGGTCACT 70
|||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1 AGAACATTTCGCTCAGGTTCAGATCGCCTGAAGTAAAAC-AAAAAAATGCTCCGGTCACT 59
Query 71 TCTTCTCCGACGCTCCGTCGGCCATTCTCTCGGAACCCTATCTCCGTCTTCATCCACCAT 130
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 60 TCTTCTCCGCCGCTCCGTCGGCCATTCTCTGGGAACCCTATCTCCGTCTTCATCCACCAT 119
Query 131 CCGTTCCT-CATTTTCGCCTCATCGTACTCTCTGCACCACCGGTCAAACATTGAcaccac 189
||| | || |||||||||||| ||||||||||||||| |||||||||||||||| ||||
Sbjct 120 CCGGT-CTCCATTTTCGCCTCCCCGTACTCTCTGCACCGCCGGTCAAACATTGACTCCAC 178
Query 190 caccgccgccaccgccacgtcctccacctccgcctccggccaccgcctcAGAAGCTC-AA 248
|||||||||||||||||||||||||||||||| |||| |||||||||||||||| | ||
Sbjct 179 CACCGCCGCCACCGCCACGTCCTCCACCTCCGATTCCGTCCACCGCCTCAGAAGC-CGAA 237
Query 249 TTCCGTAAATACGCCGGATACGCAGCACTCGCTATCTTCTCTGGAGTTGCTACCTATTTC 308
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 238 TTCCGTAAATACGCCGGATACGCAGCACTCGCTGTCTTCTCTGGAGTCGCTACCTATTTC 297
Query 309 TCATTTCCATTCCCTGAGAATGCTAAACACAAGAAGGCTCAAATCTTCCGTTACGCTCCT 368
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 298 TCATTTCCATTCCCTGAAAATGCTAAGCACAAGAAGGCTCAAATCTTCCGTTACGCTCCG 357
Query 369 TTACCTGAAGATCTTCACACTGTCTCTAATTGGAGTGGTACTCATGAGGTACAGACTAGG 428
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 358 TTGCCTGAAGATCTTCACACTGTCTCTAATTGGAGTGGTACGCATGAGGTACAGACGAGG 417
Query 429 AACTTTAATCAACCGGAGAATCTTGCTGATCTCGAAGCTCTTGTTAAGGAATCTCATGAG 488
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 418 AACTTTAATCAACCGGAGAATCTAGCTGACCTCGAAGCTCTCGTTAAGGAATCTCATGAG 477
Query 489 AAGAAGTTAAGGATTCGTCCCGTTGGATCGGGTCTCTCGCCTAATGGGATTGGTTTGTCT 548
|||||||||||||| || ||||||||||||||||| || || ||||||||||||||||||
Sbjct 478 AAGAAGTTAAGGATCCGACCCGTTGGATCGGGTCTGTCCCCCAATGGGATTGGTTTGTCT 537
Query 549 CGCTCTGGGATGGTGAATCTGGCGCTTATGGATAAAGTTCTAGAGGTGGATAAAGAGAAG 608
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 538 CGCTCCGGGATGGTGAATCTAGCGCTCATGGATAAAGTTCTAGAGGTGGATAAAGAGAAG 597
Query 609 AAGAGAGTTACGGTGCAGGCTGGGATTAGGGTCCAGCAATTGGTTGACGCCATTAAAGAC 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AAGAGAGTTACGGTGCAGGCTGGGATTAGGGTCCAGCAATTGGTTGACGCCATTAAAGAC 657
Query 669 TATGGTCTTACTCTTCAGAACTTTGCCTCCATTAGAGAGCAGCAGATTGGTGGTATTATT 728
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 TATGGTCTGACTCTTCAGAACTTTGCCTCCATTAGAGAGCAGCAAATTGGTGGTATTATT 717
Query 729 CAGGTTGGGGCACATGGGACAGGTGCTAGATTGCCTCCTATTGATGAGCAGGTGATCAGT 788
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CAGGTTGGGGCACATGGAACAGGTGCTAGATTGCCTCCTATTGATGAGCAGGTGATCAGT 777
Query 789 ATGAAGCTGGTTACTCCTGCGAAGGGAACAATTGAACTTTCAAGAGAGAAAGATCCGGAG 848
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 778 ATGAAGCTGGTTACTCCTGCAAAGGGAACAATTGAACTTTCAAGAGAGAAAGATCCGGAG 837
Query 849 CTCTTTCATCTAGCTCGATGTGGCCTTGGTGGACTTGGAGTTGTTGCTGAGGTCACCCTC 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CTCTTTCATCTAGCTCGATGTGGCCTTGGTGGACTTGGAGTTGTTGCTGAGGTCACCCTC 897
Query 909 CAATGCGTTGCAAGACATGAACTTGTGGAACACACATACGTCTCAAACTTGCAAGAAATC 968
||||| || | |||||||||||||||||| ||||||||||| |||||||||| |||||||
Sbjct 898 CAATGTGTGGAAAGACATGAACTTGTGGAGCACACATACGTTTCAAACTTGCTAGAAATC 957
Query 969 AAGAAAAATCACAAAAAATTGCTCTCTGCAAACAAGCATGTTAAGTACCTATATATTCCT 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AAGAAAAATCACAAAAAATTGCTCTCTGCAAACAAGCATGTTAAGTACCTATATATTCCT 1017
Query 1029 TATACCGACACAGTCGTGGTTGTAACATGCAATCCTGTATCAAAATGGAGTGGGCCACCT 1088
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1018 TATACCGACACAGTCGTGGTTGTAACATGCAACCCTGTATCAAAATGGAGTGGGCCACCT 1077
Query 1089 AAGGACAAACCAAAGTACACTACAGATGAGGCTGTACAGCATGTCCGTGATCTCTACAGA 1148
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1078 AAGGACAAACCAAAGTACACTACAGAGGAGGCTGTACAGCATGTCCGTGATCTCTATAGA 1137
Query 1149 GAGAGCATTGTGAAGTATAGGGTCCAGGACTCTGGTAAGAAGTCTCCTGACAGCAGTGAG 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1138 GAGAGCATTGTGAAGTATAGGGTCCAGGACTCTGGTAAGAAGTCTCCTGACAGCAATGAG 1197
Query 1209 CCAGACATACAGGAGCTTTCATTTACAGAGTTGAGAGACAAACTACTTGCCCTTGATCCT 1268
||||| ||| |||||||||| ||||||||||||||||| || ||||||||||| ||||||
Sbjct 1198 CCAGATATAAAGGAGCTTTCGTTTACAGAGTTGAGAGATAAGCTACTTGCCCTCGATCCT 1257
Query 1269 CTCAATGACGTTCACGTTGCAAAAGTAAATCAAGCTGAGGCAGAGTTTTGGAAAAAATCA 1328
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1258 CTCAATGACGTTCATGTTGCAAAAGTAAATCAGGCTGAGGCGGAGTTTTGGAAAAAATCA 1317
Query 1329 GAAGGATATAGAGTAGGGTGGAGTGATGAAATTCTGGGCTTTGACTGTGGTGGTCAGCAG 1388
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1318 GAAGGATATAGAGTAGGGTGGAGTGATGAAATTCTGGGCTTTGACTGTGGTGGTCAACAG 1377
Query 1389 TGGGTGTCAGAATCTTGTTTTCCTGCTGGAACCCTCGCCAACCCTAGCATGAAAGACCTT 1448
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1378 TGGGTATCAGAATCTTGTTTTCCTGCTGGAACGCTTGCCAACCCTAGCATGAAAGACCTT 1437
Query 1449 GAATACATAGAAGAGCTGAAAAAACTAATAGAAAAGGAAGCAATACCAGCACC-TGCTCC 1507
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1438 GAATACATAGAAGAGCTGAAAAAACTAATAGAAAAGGAAGCAATACCAGCACCAT-CTCC 1496
Query 1508 AATAGAGCAGCGATGGACAGCTCGAAGTAAGAGCCCCATTAGTCCTGCATTCAGCACTTC 1567
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1497 TATAGAGCAGCGATGGACGGCTCGAAGTAAGAGCCCCATTAGTCCTGCATTCAGCACTGC 1556
Query 1568 AGAGGATGATATTTTCTCATGGGTTGGTATAATCATGTACCTCCCGACAGCAGACCCTCG 1627
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 AGAGGATGACATTTTTTCATGGGTTGGTATAATCATGTACCTCCCGACAGCAGACCCTCG 1616
Query 1628 CCAGAGAAAGGACATCACAGATGAATTTTTCCACTATAGACATTTGACACAGAAACAATT 1687
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1617 CCAGAGGAAGGACATCACAGATGAATTTTTCCACTATAGACATTTGACACAGAAGCAATT 1676
Query 1688 GTGGGATCAATTTTCTGCGTATGAACATTGGGCTAAAATTGAGATACCAAAAGACAAAGA 1747
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1677 ATGGGATCAATATTCTGCGTATGAACATTGGGCTAAAATTGAGATACCAAAAGATAAAGA 1736
Query 1748 AGAACTTGAAGCCTTACAGGCAAGAATAAGAAAACGTTTCCCAGTGGATGCATACAACAA 1807
||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||
Sbjct 1737 GGAACTTGAAGCCTTACAAGCAAGAATCAGAAAACGTTTCCCAGTGGATAAATACAACAA 1796
Query 1808 AGCACGTAGGGAGCTGGACCCAAATAGAATCCTCTCCAACAACATGGTGGAAAAGCTCTT 1867
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1797 AGCACGCAGGGAGCTGGACCCAAATAGAATCCTCTCCAACAACATGGTAGAAAAGCTCTT 1856
Query 1868 CCCAGTCTCCACCACTGCTTAAAACATTTTCATCAATAGGttttttcctctttttggga 1926
|||||||||||||||||||||||||||||||| |||||| || ||||||||| ||||||
Sbjct 1857 CCCAGTCTCCACCACTGCTTAAAACATTTTCACCAATAGATTATTTCCTCTTGTTGGGA 1915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78351633965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5