BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47940.1
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485157 jgi|Araly1|485157|fgenesh2_kg.5__1149__AT3G47940.1 2139 0.0
Ahg915087 jgi|Araly1|915087|Al_scaffold_0009_56 342 4e-93
> Ahg485157 jgi|Araly1|485157|fgenesh2_kg.5__1149__AT3G47940.1
Length=1475
Score = 2139 bits (1158), Expect = 0.0
Identities = 1379/1484 (93%), Gaps = 22/1484 (1%)
Strand=Plus/Plus
Query 3 CGGTGGAAACAGCCTTCCCTC-TTCCCTAGTCTCCCACGCTTCTGTTTCGCATTTTCCCC 61
||||||||| | ||||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct 1 CGGTGGAAAGATCCTTCCCTCTTTCCCTAGTCT-CCACGCATCTGTTTCGCATTTTCCCC 59
Query 62 CATTTTCTCCGGCGACGGCCAATCATCATCAACCGCCGGCGAAAACCTCAGATTCGTGAA 121
| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 60 CTTTTTCTCCGGCGACGGCCAATCATCGTCAACCGCCGGCAAAAACCTCAGATTCGTGAA 119
Query 122 TCTGATTCATTCATTCCGTGATTAAGATGGGTGTAGATTACTACAATATACTAAAGGTGA 181
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 120 GCTGATTCATTCATTGTGTGATTAAGATGGGTGTAGATTACTACAATATACTCAAGGTAA 179
Query 182 ATCACAACGCGACGGAGGATGATCTCAAGAAAGCTTACAAGCGTCTCGCCATGATTTGGC 241
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACCACAACGCGACGGAGGATGATCTCAAGAAAGCTTACAAGCGTCTCGCCATGATTTGGC 239
Query 242 ATCCCGATAAGAATCCATCGACGCGTCGAGACGAAGCTGAAGCCAAATTCAAACGGATCT 301
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 ATCCCGATAAGAACCCATCGACGCGTCGAGACGAAGCAGAAGCCAAATTCAAACGGATCT 299
Query 302 CCGAAGCTTACGATGTTCTCTCTGATCCTCAGAAACGTCAGATCTACGATCTTTACGGCG 361
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 300 CCGAAGCTTACGACGTTCTTTCCGATCCTCAGAAACGTCAGATCTACGATCTTTACGGCG 359
Query 362 AGGAAGGTCTTAAATCTGGCAAAATCCCTAA---ttcttcttcatcggaggcttcttctt 418
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 AGGAAGGTCTCAAGTCTGGCAAAATCCCTAATTCTTCTTCTTCATCGGAGGCTTCTTCTT 419
Query 419 cttcttcttcttcCTCCTCGAGATATCCTCACTTTCATCAGCACAGGCCGCAGCATCCGC 478
| ||||||||||| |||||||||||| | || ||||||||||| ||||||||||||||||
Sbjct 420 CATCTTCTTCTTCTTCCTCGAGATATTCGCATTTTCATCAGCATAGGCCGCAGCATCCGC 479
Query 479 CTAACGCTTCGTCGTTTCGTTTTAACCCTAGAGACGCGGAGGACATCTATGCTGAGTTCT 538
|||| || ||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 480 CTAATGCGGCGTCGTTTCGTTTTAACCCTAGAGATGCGGAGGATATCTATGCTGAGTTCT 539
Query 539 TTGGATCTGAAAATGGTGGAGGAAGCAATAATGCTGGTGGGAGAGGAAACAGAGCGTTTA 598
|||||||||||| ||| ||||||||| |||| ||||||||||||||||||| ||| ||
Sbjct 540 TTGGATCTGAAAGTGGAGGAGGAAGC---AATGGTGGTGGGAGAGGAAACAGAACGTATA 596
Query 599 GGAATGGTCATTTCAACACCGGTGGTGCCAATGGTTATAGCGGTGAGATGAGGAAAGTTC 658
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 597 GGAATGGTCATTCCAACACCGGTGGTGCTAATGGTTATAGCGGTGAGATGAGGAAAGTTC 656
Query 659 CAGCTATGGAGAATCCATTGCCTGTGAGTTTGGAGGATCTGTATAAAGGTGTGGTGAAGA 718
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 657 CAGCTGTGGAGAATCCATTGCATGTGAGTTTGGAGGATCTGTATAAAGGTGTGGTGAAGA 716
Query 719 AGATGCGGATAACTAGAAATGTCTATGATGCTTCTGGGAGAATGATGGTAGAGGCGGAGA 778
|||||||| ||||||||||||| ||||||||||||||||| ||||||||||||| |||||
Sbjct 717 AGATGCGGTTAACTAGAAATGTATATGATGCTTCTGGGAGGATGATGGTAGAGGAGGAGA 776
Query 779 TATTGCCTATAGAAATAAAACCTGGTTGGAAGAAAGGAACAAAGCTGACATTTCCTAAGA 838
||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 777 TATTGCCTATAGATATAAAACCTGGTTGGAAGAAAGGTACGAAGCTGACATTCCCTAAGA 836
Query 839 AAGGCAATGAAGAGCCTGGAATCATACCAGCAGATATTGTATTCGTGGTTGAAGAGAAGC 898
||||||||||||| |||||||||||||| || |||||| | |||||||||||||||||||
Sbjct 837 AAGGCAATGAAGAACCTGGAATCATACCGGCGGATATTATTTTCGTGGTTGAAGAGAAGC 896
Query 899 CACATCCTGTTTACAAGAGAGATGGGAACGATCTTTTGGTCAGTCAGGAGATAACTCTAC 958
||||||||||||||||||||||||| ||||| |||||||| | ||| |||||||||||||
Sbjct 897 CACATCCTGTTTACAAGAGAGATGGAAACGACCTTTTGGTTAATCAAGAGATAACTCTAC 956
Query 959 TTGAAGCTTTAACTGGTAAGACT-GTCAATCTGATCACGCTTGATGGAAGGACTCTCATG 1017
||||||| ||||||||||||| | || || ||||||||||||||||||||||||||||||
Sbjct 957 TTGAAGCCTTAACTGGTAAGA-TCGTTAACCTGATCACGCTTGATGGAAGGACTCTCATG 1015
Query 1018 ATCCCATTGACGGAGATCATTAAACCTGATCATGAGATTGTTGTTCCAAACGAAGGAATG 1077
|||||| | || ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1016 ATCCCACTAACCGAGATTATTAAACCCGATCATGAGATTGTTGTTCCAAACGAAGGAATG 1075
Query 1078 CCTATCTCTAAAGAACCTGG-AAAAAAGGGTAACTTGAAACTGAAGCTTAGTGTGAAATA 1136
|| || ||||||||||| || |||||| || ||| ||||| |||||||||||||||||||
Sbjct 1076 CCAATTTCTAAAGAACCCGGTAAAAAA-GGCAACCTGAAATTGAAGCTTAGTGTGAAATA 1134
Query 1137 CCCGTCGAGGCTCACATCGGATCAGAAATTCGAGCTAAAGAGAGTTCTTGGTGGGGTCTC 1196
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||
Sbjct 1135 CCCGTCGAGGCTCACATCGGAACAGAAATCCGAGCTAAAGAGAGTTCTTGGTGGGGTATC 1194
Query 1197 ATGAGGAAGTCATTGATGAATGTAGATAGCAAAAGTAGAGGAGATGATAGATTGTGAATG 1256
|||| ||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1195 ATGAAGAACTCAATGATGAATGTAGATAGCAAAGGTAGAGGAGATGATAGATTGTGAATG 1254
Query 1257 GTAGGAGGGATTCTTCTAAGGAGGCTTGGATTTGAGAGCCGAAGAACCAACACAAGCTTT 1316
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1255 GTAGGAGGGATTCTTCTAAGGAGGCTTGGATTTGAGAGCCGAAGAACAAACACAAGCTTT 1314
Query 1317 GCTTCTGTCTTTTTACTTCTCTTGTTTGAAATTAGACCTTTTTCCCCTTTGTTTAATTAT 1376
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1315 GCTTCTGTCTTTTTACTTCTCTTGTTTGAAATTAGAC-TTTTTCCCCTTTGTTTAATTAT 1373
Query 1377 TTCATTGATTTGATTTGATTTCGCTGCCTTCTAATGTTTAGAGAGTGTGTACTCCA--A- 1433
||||||||||||||||||||||| |||||||||||||||| | ||||| |||||| |
Sbjct 1374 TTCATTGATTTGATTTGATTTCGTTGCCTTCTAATGTTTATACAGTGT--ACTCCATGAA 1431
Query 1434 ----GGTATGCTTTGTTACCTATTTATCTTATTTGATAAAAATT 1473
|||||||||||||||||||||||||| |||||||||||||
Sbjct 1432 TTAAGGTATGCTTTGTTACCTATTTATCTTCTTTGATAAAAATT 1475
> Ahg915087 jgi|Araly1|915087|Al_scaffold_0009_56
Length=330
Score = 342 bits (185), Expect = 4e-93
Identities = 269/307 (88%), Gaps = 16/307 (5%)
Strand=Plus/Plus
Query 575 GTGGGAGAGGAAACAGAGCGTTTAGGAATGGTCATTTCAACACC------GG-------- 620
||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 7 GTGGGAGAGGACACAGAACGTTTAGGAATGGTCATTTCAACACCAGTGGTGGTAATTAAT 66
Query 621 T--GGTGCCAATGGTTATAGCGGTGAGATGAGGAAAGTTCCAGCTATGGAGAATCCATTG 678
| ||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 67 TACGGTGCGAATGGTTATAGCGGTGAGATGAGGAAAGCTCCAGCTGTGGAGAATCCATTG 126
Query 679 CCTGTGAGTTTGGAGGATCTGTATAAAGGTGTGGTGAAGAAGATGCGGATAACTAGAAAT 738
|||||||||||||||||||||||||| |||||| |||||||||||| || | ||||||
Sbjct 127 CCTGTGAGTTTGGAGGATCTGTATAACGGTGTGAAGAAGAAGATGCGTTTATCGAGAAAT 186
Query 739 GTCTATGATGCTTCTGGGAGAATGATGGTAGAGGCGGAGATATTGCCTATAGAAATAAAA 798
||||| ||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||
Sbjct 187 GTCTACGATGCTTCTGGGAAAATGATGGTAGAGGAGGAGATATTACCTATAGATATAAAA 246
Query 799 CCTGGTTGGAAGAAAGGAACAAAGCTGACATTTCCTAAGAAAGGCAATGAAGAGCCTGGA 858
||||||| ||||||||| |||||||| ||||| |||||||||||||||||| ||||||||
Sbjct 247 CCTGGTTTGAAGAAAGGTACAAAGCTCACATTCCCTAAGAAAGGCAATGAAAAGCCTGGA 306
Query 859 ATCATAC 865
|||||||
Sbjct 307 ATCATAC 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55230855250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5