BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47950.1
Length=3220
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951055 jgi|Araly1|951055|scaffold_802942.1 3406 0.0
Ahg897637 jgi|Araly1|897637|Al_scaffold_0005_1603 761 0.0
> Ahg951055 jgi|Araly1|951055|scaffold_802942.1
Length=2914
Score = 3406 bits (1844), Expect = 0.0
Identities = 2530/2868 (88%), Gaps = 19/2868 (1%)
Strand=Plus/Plus
Query 170 GTCCTCGAGGCTGTTTTGAAAGAAGCGGTCGATCTGGAAAATGTGCCAATTGAAGAAGTA 229
||||| ||||| |||||||||||| | || |||||||| |||||||| |||||||||||
Sbjct 42 GTCCTTGAGGCGGTTTTGAAAGAAACTGTGGATCTGGAGAATGTGCCTATTGAAGAAGTT 101
Query 230 TTTGAGAATCTGAGATGTAGCAAG-GAAGGTCTCACTACACAAGCTGCTGATGAAAGACT 288
||||||| ||||||||||||| || ||||||||||||||| |||||||||||||||| ||
Sbjct 102 TTTGAGAGTCTGAGATGTAGC-AGAGAAGGTCTCACTACAGAAGCTGCTGATGAAAGGCT 160
Query 289 TGCTCTCTTTGGCCATAACAAACTCGAAGAGAAAAAGGAAAGCAAATTCCTTAAGTTT-T 347
|||||| ||||| |||||||| ||||||||||| ||||||||||||||||| || ||| |
Sbjct 161 TGCTCTTTTTGGGCATAACAAGCTCGAAGAGAAGAAGGAAAGCAAATTCCTGAAATTTCT 220
Query 348 TAGGCTTT-ATGTGGAACCCTCTTTCCTGGGTGATGGAAGCTGCTGCTATTATGGCTATT 406
| || ||| |||||||| |||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 221 T-GG-TTTCATGTGGAATCCTCTTTCTTGGGTTATGGAAGCTGCTGCTATCATGGCTATT 278
Query 407 GCGCTTGCTAATGGAGGAGGAAAACCTCCTGATTGGCAAGACTTTGTTGGTATTATCACT 466
| |||||||| |||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 279 GTTCTTGCTAACGGAGGAGGGAAGCCTCCTGATTGGCAAGACTTTGTTGGTATTATTACT 338
Query 467 CTGCTTGTGATTAACTCCACCATCAGTTTCATTGAGGAGAACAATGCAGGAAACGCTGCA 526
|| |||||||| || ||||||||||||||||| ||||||||||| ||||| || |||||
Sbjct 339 CTTCTTGTGATCAATTCCACCATCAGTTTCATAGAGGAGAACAACGCAGGGAATGCTGCT 398
Query 527 GCTGCTCTCATGGCCCGTCTAGCCCCGAAAGCAAAGGTTCTTCGAGATGGAAGGTGGGGT 586
|||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 399 GCTGCTCTTATGGCACGTCTTGCCCCCAAAGCAAAGGTTCTTCGAGATGGAAGGTGGGGT 458
Query 587 GAGCAGGATGCTGCGATTCTCGTTCCCGGTGATATAATCAGCATCAAGCTTGGGGATATC 646
|||||||||||||| ||||| ||||| ||||| ||| ||||||||||||||||||||||
Sbjct 459 GAGCAGGATGCTGCAATTCTTGTTCCTGGTGACATAGTCAGCATCAAGCTTGGGGATATT 518
Query 647 GTCCCAGCTGATGCACGCCTTCTCGAGGGTGATCCCCTTAAGATCGATCAGTCTGCTCTT 706
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 519 GTTCCAGCTGATGCTCGCCTTCTCGAGGGTGATCCCCTTAAGATCGATCAGTCTTCTCTT 578
Query 707 ACTGGTGAATCTCTACCAGTAACCAAAAGTTCTGGAGATGGTGTCTATTCCGGTTCTACA 766
|||||||||||||| |||||||||||| || | || |||||||| |||||||| || ||
Sbjct 579 ACTGGTGAATCTCTCCCAGTAACCAAAGGTCCAGGGGATGGTGTGTATTCCGGCTCCACT 638
Query 767 TGCAAACAAGGAGAGATCGAAGCAGTTGTTATCGCAACTGGCGTCCATACCTTTTTTGGA 826
|||||||| |||||| | ||||||||||| |||||||| || ||||||||||| ||||||
Sbjct 639 TGCAAACAGGGAGAGCTTGAAGCAGTTGTGATCGCAACGGGAGTCCATACCTTCTTTGGA 698
Query 827 AAGGCTGCTCACCTTGTTGATACGACAAACCAAATTGGTCA-TTTCCAACAGGTTTTAAC 885
||||| || || |||||||||||||| |||||| |||| || |||| ||||||| |||||
Sbjct 699 AAGGCCGCACATCTTGTTGATACGACCAACCAAGTTGGCCACTTTC-AACAGGTGTTAAC 757
Query 886 TGCAATTGGGAACTTT-TGCATCTGCTCTATTGCTGTGGGGATGCTCATTGAGATTGTCG 944
||| |||||||| ||| ||||||||||||||||| ||||||||| | |||||||||||||
Sbjct 758 TGCCATTGGGAA-TTTCTGCATCTGCTCTATTGCAGTGGGGATGATAATTGAGATTGTCG 816
Query 945 TGATGTA-CCCTATTCAACACCGAGCATACCGCCCTGGGATTGATAACCTTCTTGTGCTT 1003
| ||||| ||| ||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 817 TTATGTATCCC-ATTCAACACCGAGCATATCGTCCTGGAATTGATAACCTTCTTGTGCTT 875
Query 1004 CTCATTGGTGGAATTCCAATTGCCATGCCTACAGTTCTGTCTGTGACCATGGCAATTGGC 1063
|||||||| || || |||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 876 CTCATTGGCGGTATCCCAATTGCTATGCCTACAGTTCTCTCTGTGACCATGGCCATTGGC 935
Query 1064 TCCCACAGACTATCTCAGCAGGGAGCTATCACTAAGAGAATGACGGCGATTGAGGAAATG 1123
|| || || |||||||||||||||| || || ||||| ||||| |||||||||||||||
Sbjct 936 TCGCATAGGTTATCTCAGCAGGGAGCAATAACCAAGAGGATGACAGCGATTGAGGAAATG 995
Query 1124 GCTGGCATGGACGTTCTTTGCAGTGACAAGACGGGCACTTTGACATTGAATAAACTTACT 1183
||||||||||| || |||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct 996 GCTGGCATGGATGTGCTTTGCAGCGACAAAACCGGAACTTTAACATTGAATAAACTTACT 1055
Query 1184 GTTGACAAAAATCTGATTGAAGTTTTCATGAAAGGAGTGGATGCAGATACTGTTGTCCTG 1243
|||||||||||||| ||||| ||||||| ||||||||||||||||||||| || || |||
Sbjct 1056 GTTGACAAAAATCTTATTGAGGTTTTCACGAAAGGAGTGGATGCAGATACAGTAGTTCTG 1115
Query 1244 ATGGCAGCTCGAGCCTCCAGACTAGAGAACCAAGATGCTATAGATGCTGCTATAGTCGGG 1303
|||||||||| |||||| ||||| || ||||||||||| || |||||||||||||| |||
Sbjct 1116 ATGGCAGCTCAAGCCTCTAGACTGGAAAACCAAGATGCCATTGATGCTGCTATAGTTGGG 1175
Query 1304 ATGCTGGCAGATCCTAAAGATGCACGAGCTGGTATCC-AGGAGGTTCACTTTCTTCCTTT 1362
||||| || || |||||||| |||||||||||| | | || |||||||||||||||| ||
Sbjct 1176 ATGCTTGCTGACCCTAAAGAGGCACGAGCTGGTGTTCGAG-AGGTTCACTTTCTTCCATT 1234
Query 1363 CAATCCTACTGATAAGAGAACGGCTCTGACATATATTGACAATGAGGGTAACACACATAG 1422
|||||| ||||||||||| |||||||| ||||||||||||| ||| ||||| | |||||
Sbjct 1235 CAATCCCACTGATAAGAGGACGGCTCTTACATATATTGACAGTGATGGTAAAATGCATAG 1294
Query 1423 AGTGAGCAAAGGTGCTCCTGAGCAAATCTTAAATCTTGCACACAATAAATCAGAGATTGA 1482
|| ||||||||||| |||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct 1295 GGTCAGCAAAGGTGCACCTGAGCAAATCCTAAATCTTGCGCACAATAAAGCAGAGATTGA 1354
Query 1483 GCGGAGAGTTCATGCTGTTATTGATAAGTTCGCTGAAAGGGGTCTGCGATCTCTTGCTGT 1542
|||||||||||||||||| || || |||||||||||| ||||| | ||||||||||| ||
Sbjct 1355 GCGGAGAGTTCATGCTGTAATAGACAAGTTCGCTGAACGGGGTTTACGATCTCTTGCCGT 1414
Query 1543 GGCGTACCAGGATGTTCCTGAAGGGAGGAAGGATAGTGCTGGAGGTCCTTGGCAATTTGT 1602
||| |||||||| ||||| ||||||| |||||| ||||||||||| |||||||||||| |
Sbjct 1415 GGCATACCAGGAAGTTCCGGAAGGGACGAAGGAAAGTGCTGGAGGCCCTTGGCAATTTAT 1474
Query 1603 GGGTCTCATGCCTCTTTTTGATCCGCCTAGGCATGACAGTGCTGAGACGATAAGAAGGGC 1662
|||||| |||||||||||||| || ||||||||||||||||| ||||| || ||||||||
Sbjct 1475 GGGTCTGATGCCTCTTTTTGACCCACCTAGGCATGACAGTGCCGAGACAATTAGAAGGGC 1534
Query 1663 TTTAAATCTTGGTGTGAGTGTTAAAATGATCACAGGGGATCAACTGGCTATAGGAAAAGA 1722
|||||||||||| |||| ||| |||||||||||||||||||| |||| |||||||||||
Sbjct 1535 TTTAAATCTTGGGGTGAATGTCAAAATGATCACAGGGGATCAGTTGGCAATAGGAAAAGA 1594
Query 1723 GACTGGGCGCCGTTTGGGGATGGGAACCAACATGTACCCCTCATCCGCTTTACTTGGACA 1782
|||||| |||||||| ||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 1595 GACTGGACGCCGTTTAGGGATGGGAACCAACATGTACCCTTCATCTGCTTTACTCGGACA 1654
Query 1783 GAACAAGGATGAGTCGATAGTTGCTTTACCTGTCGATGAGCTCATAGAGAAAG-CTGATG 1841
| ||||||||||||| |||| ||| ||||| ||||||| |||||||| |||| | ||||
Sbjct 1655 GCACAAGGATGAGTCTATAGGTGCCTTACCCATCGATGATCTCATAGA-AAAGGCCGATG 1713
Query 1842 GCTTTGCGGGTGTCTTCCCTGAGCATAAATATGAGATAGTGAAGCGATTACAAGCCAGGA 1901
||||||| || || || ||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct 1714 GCTTTGCTGGCGTTTTTCCTGAGCATAAATATGAGATAGTTAAGCGACTACAAGCGAGGA 1773
Query 1902 AACATATATGTGGAATGACGGGTGATGGTGTAAATGATGCTCCTGCTCTTAAAAAGGCTG 1961
| ||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 1774 AGCATATTTGTGGAATGACAGGTGATGGAGTAAATGATGCGCCTGCTCTTAAAAAGGCTG 1833
Query 1962 ACATAGGCATTGCAGTTGCTGATGCCACTGATGCAGCTCGTAGCGCATCGGATATTGTTC 2021
|||| |||||||||||||||||||| ||||||||||| ||||| || || || || ||||
Sbjct 1834 ACATTGGCATTGCAGTTGCTGATGCAACTGATGCAGCACGTAGTGCTTCAGACATCGTTC 1893
Query 2022 TTACTGAACCTGGTCTTAGCGTTATCATCAGTGCTGTTTTGACCAGTCGTGCTATCTTCC 2081
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1894 TTACTGAACCTGGTCTTAGTGTTATCATCAGCGCTGTCTTGACCAGTCGTGCTATCTTCC 1953
Query 2082 AGAGAATGAAAAATTATACTATCTACGCAGTCTCCATCACAATCCGTATTGTTCTGGGCT 2141
||||||||||||||||||| ||||| || || |||||||| ||||||||||| || ||||
Sbjct 1954 AGAGAATGAAAAATTATACAATCTATGCGGTTTCCATCACTATCCGTATTGTCCTTGGCT 2013
Query 2142 TTATGCTTCTGGCTCTCATATGGCAGTTTGACTTCCCACCTTTCATGGTCCTTATCATTG 2201
| ||||| |||||||| |||||| |||||||||| ||||| |||||||| |||||||| |
Sbjct 2014 TCATGCTGCTGGCTCTTATATGGAAGTTTGACTTTCCACCCTTCATGGTTCTTATCATCG 2073
Query 2202 CCATTCTTAATGATGGTACGATCATGACAATATCAAAGGACAGGGTGAAACCTTCCCCTC 2261
|||| || |||||||| || || |||||||||||||| ||||| ||||||||||||||||
Sbjct 2074 CCATCCTGAATGATGGCACAATTATGACAATATCAAAAGACAGAGTGAAACCTTCCCCTC 2133
Query 2262 TTCCAGATAGCTGGAAGCTTTCTGAGATTTTTGCTACCGGTGTTGTCTTTGGCAGTTACA 2321
|||||||||||||||| || || ||||||||||| || || ||||| ||||| || ||||
Sbjct 2134 TTCCAGATAGCTGGAAACTCTCAGAGATTTTTGCAACTGGCGTTGTGTTTGGGAGCTACA 2193
Query 2322 TGGCCATGATGACCGTTATATTTTTCTGGGTTTCATACAAAACCGATTTCTTCCCGAGAA 2381
|||| |||||||| |||||||||||||||| | |||| |||||||| ||||||||| | |
Sbjct 2194 TGGCGATGATGACAGTTATATTTTTCTGGGCTGCATATAAAACCGACTTCTTCCCGCGTA 2253
Query 2382 CTTTTGGAGTTGCGACACTTGAGAAAACTGCTCATGATGATTTCCGAAAGCTTGCCTCAG 2441
||||||||||| | || ||||||||||| || |||||||||||||| |||||||||||||
Sbjct 2254 CTTTTGGAGTTTCAACCCTTGAGAAAACAGCACATGATGATTTCCGGAAGCTTGCCTCAG 2313
Query 2442 CCATATACCTGCAAGTCAGTATTATCAGTCAGGCACTTATCTTTGTGACCCGATCGCGAA 2501
| ||||||||||||||||| || || |||||||| |||||||||||||||||||| || |
Sbjct 2314 CAATATACCTGCAAGTCAGCATCATAAGTCAGGCGCTTATCTTTGTGACCCGATCACGGA 2373
Query 2502 GCTGGTCTTTTGTGGAACGTCCCGGGATATTTCTTATGATTGCCTTTATCCTCGCTCAGT 2561
| ||||||| ||| |||||||| ||||| | ||| |||| |||||||||||||| || |
Sbjct 2374 GTTGGTCTTATGTAGAACGTCCTGGGATGTGGCTTGTGATAGCCTTTATCCTCGCACAAT 2433
Query 2562 TGGTGGCTACTCTAATTGCAGTCTATGCAAATTGGAGCTTTGCTGCGATAGAAGGAATAG 2621
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| || |
Sbjct 2434 TGGTGGCTACTCTAATTGCAGTGTATGCGAATTGGAGCTTTGCTGCAATAGAAGGGATCG 2493
Query 2622 GTTGGGGATGGGCCGGGGTCATTTGGCTCTATAACATCATATTCTACATCCCCCTTGATT 2681
| |||||||||||||||||||| ||||| || || ||| ||||||| || || ||||||
Sbjct 2494 GGTGGGGATGGGCCGGGGTCATCTGGCTTTACAATATCGTATTCTATATTCCTCTTGATA 2553
Query 2682 TCATCAAATTCTTCATCCGCTACGCTCTTAGTGGCAGAGCCTGGGATCTTGTTATCGAAC 2741
||||||| ||||| || || || || ||||| || |||||||||||||||||||||||||
Sbjct 2554 TCATCAAGTTCTTGATTCGTTATGCCCTTAGCGGAAGAGCCTGGGATCTTGTTATCGAAC 2613
Query 2742 AAAGGGTTGCGTTCACAAGGCAAAAAGATTTTGGGAAAGAACAAAGAGAGCTGCAATGGG 2801
|||||||||| ||||| ||||| || ||||| |||||||||||||| ||||| |||||||
Sbjct 2614 AAAGGGTTGCATTCACGAGGCAGAAGGATTTCGGGAAAGAACAAAGGGAGCTACAATGGG 2673
Query 2802 CTCACGCACAAAGAACGCTCCATGGTCTACAAGCACCAGATACTAAGATGTTCACAGATC 2861
| |||||||| ||||| || || || || |||||||||||| ||||||||||| |||| |
Sbjct 2674 CGCACGCACAGAGAACTCTGCACGGCCTGCAAGCACCAGATGCTAAGATGTTCCCAGAGC 2733
Query 2862 GAACCCATGTCAGTGAACTTAACCAAATGGCTGAAGAAGCCAAGAGGAGAGCTGAAATTG 2921
|||||||| ||| || ||| |||||||||||||||||| ||||| ||||||||||| |
Sbjct 2734 GAACCCATTTCAACGAGCTTTCCCAAATGGCTGAAGAAGCTAAGAGAAGAGCTGAAATCG 2793
Query 2922 CTAGGTTGCGTGAACTTCACACGCTCAAGGGCCATGTTGAATCAGTGGTGAGACTCAAAG 2981
| |||||||| || |||||||| |||||||| ||||||||||| || |||||||| ||||
Sbjct 2794 CCAGGTTGCGGGAGCTTCACACACTCAAGGGTCATGTTGAATCTGTTGTGAGACT-AAAG 2852
Query 2982 GA-CTCGACATAGAAACCATTCAACAAGCTTACACTGTCTGAGA-AAG 3027
| |||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 2853 GGTCTCGACATTGAAACCATTCAACAAGCTTACACCGTCTGAGAGAAG 2900
> Ahg897637 jgi|Araly1|897637|Al_scaffold_0005_1603
Length=465
Score = 761 bits (412), Expect = 0.0
Identities = 444/460 (97%), Gaps = 0/460 (0%)
Strand=Plus/Plus
Query 2563 GGTGGCTACTCTAATTGCAGTCTATGCAAATTGGAGCTTTGCTGCGATAGAAGGAATAGG 2622
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 6 GGTGGCTACTTTAATTGCAGTCTATGCAAATTGGAGCTTTGCTGCGATAGAAGGAATTGG 65
Query 2623 TTGGGGATGGGCCGGGGTCATTTGGCTCTATAACATCATATTCTACATCCCCCTTGATTT 2682
|||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct 66 TTGGGGATGGGCTGGGGTCATTTGGCTTTATAACATCATATTCTATGTCCCACTTGATTT 125
Query 2683 CATCAAATTCTTCATCCGCTACGCTCTTAGTGGCAGAGCCTGGGATCTTGTTATCGAACA 2742
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 126 CATCAAATTCTTCATCTGCTACACTCTTAGTGGCAGAGCCTGGGATCTTGTTATCGAACA 185
Query 2743 AAGGGTTGCGTTCACAAGGCAAAAAGATTTTGGGAAAGAACAAAGAGAGCTGCAATGGGC 2802
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 186 AAGGGTTGCGTTCACAAGGCAAAAGGATTTTGGGAAAGAACAAAGAGAGCTGCAATGGGC 245
Query 2803 TCACGCACAAAGAACGCTCCATGGTCTACAAGCACCAGATACTAAGATGTTCACAGATCG 2862
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 246 GCACGCACAGAGAACGCTCCATGGTCTACAGGCACCAGATACTAAGATGTTCACAGATCG 305
Query 2863 AACCCATGTCAGTGAACTTAACCAAATGGCTGAAGAAGCCAAGAGGAGAGCTGAAATTGC 2922
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 306 AACCCATGTCTGTGAACTTAACCAAATGGCTGAAGAAGCCAAGAGGAGAGCTGAAATCGC 365
Query 2923 TAGGTTGCGTGAACTTCACACGCTCAAGGGCCATGTTGAATCAGTGGTGAGACTCAAAGG 2982
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TAGGTTGCGGGAACTTCACACGCTCAAGGGCCATGTTGAATCAGTGGTGAGACTCAAAGG 425
Query 2983 ACTCGACATAGAAACCATTCAACAAGCTTACACTGTCTGA 3022
||||||||||||||||||||||||||||||||||||||||
Sbjct 426 ACTCGACATAGAAACCATTCAACAAGCTTACACTGTCTGA 465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121517830589
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5